These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAGCTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA] [+] EMBL BM595744 [CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAGCTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA] consensusID : consensus_481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTGAGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGTGTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGTCTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATTTCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGT] [+] EMBL BM589878 [CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTGAGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGTGTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGTCTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATTTCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_481#0 ------------------------------------------------------------ consensus_481#1 CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTG 60 consensus_481#0 ------------------------------------------------------------ consensus_481#1 AGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGT 120 consensus_481#0 -----------------------------------------CCGCCCAAA---GGACAGT 16 consensus_481#1 GTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGT 180 *** *** ** *** consensus_481#0 ATTGGACACT-CATCAGCCATGGCCAGCAGTGAGTCGG--CAGGAAGCTCGTCCGTAATA 73 consensus_481#1 CTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATT 240 * ** * * ** ** *** * * * * * ** * * *** consensus_481#0 -CGCAAAG-------GTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG 125 consensus_481#1 TCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG 300 * ** ** ********************************************* consensus_481#0 GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC 185 consensus_481#1 GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC 360 ************************************************************ consensus_481#0 CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC 245 consensus_481#1 CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC 420 ************************************************************ consensus_481#0 GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG 305 consensus_481#1 GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG 480 ************************************************************ consensus_481#0 TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC 365 consensus_481#1 TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC 540 ************************************************************ consensus_481#0 CGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGT 425 consensus_481#1 CGGCGCAAAATGT----------------------------------------------- 553 ************* consensus_481#0 CCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCC 485 consensus_481#1 ------------------------------------------------------------ consensus_481#0 TCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAAC 545 consensus_481#1 ------------------------------------------------------------ consensus_481#0 TCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAAC 605 consensus_481#1 ------------------------------------------------------------ consensus_481#0 AGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAG 665 consensus_481#1 ------------------------------------------------------------ consensus_481#0 TCGGCAACGGCGGAAGCGAAAGGGGCCCGA 695 consensus_481#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||