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Anopheles gambiae
cluster # 481 cluster # 481       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_481#0 length = 695 sequences # 1  
consensus_481#1 length = 553 sequences # 1  

consensusID : consensus_481#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAGCTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA]

[+] EMBL BM595744             [CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAGCTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA]


>consensus_481#0 CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAG CTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGC GCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCA ACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACG GTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATC ATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCAT CGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGA CCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAG CACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCG CTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGG CGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCC GCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA



consensusID : consensus_481#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence
                              [CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTGAGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGTGTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGTCTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATTTCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGT]

[+] EMBL BM589878             [CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTGAGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGTGTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGTCTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATTTCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGT]


>consensus_481#1 CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTG AGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGT GTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGT CTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATT TCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC CGGCGCAAAATGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_481#0      ------------------------------------------------------------
consensus_481#1      CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTG 60
                                                                                 

consensus_481#0      ------------------------------------------------------------
consensus_481#1      AGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGT 120
                                                                                 

consensus_481#0      -----------------------------------------CCGCCCAAA---GGACAGT 16
consensus_481#1      GTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGT 180
                                                               ***  ***   **  ***

consensus_481#0      ATTGGACACT-CATCAGCCATGGCCAGCAGTGAGTCGG--CAGGAAGCTCGTCCGTAATA 73
consensus_481#1      CTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATT 240
                      * **      *  * **    **   *** *    *   *  *  *  ** * * *** 

consensus_481#0      -CGCAAAG-------GTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG 125
consensus_481#1      TCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG 300
                      * ** **       *********************************************

consensus_481#0      GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC 185
consensus_481#1      GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC 360
                     ************************************************************

consensus_481#0      CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC 245
consensus_481#1      CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC 420
                     ************************************************************

consensus_481#0      GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG 305
consensus_481#1      GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG 480
                     ************************************************************

consensus_481#0      TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC 365
consensus_481#1      TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC 540
                     ************************************************************

consensus_481#0      CGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGT 425
consensus_481#1      CGGCGCAAAATGT----------------------------------------------- 553
                     *************                                               

consensus_481#0      CCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCC 485
consensus_481#1      ------------------------------------------------------------
                                                                                 

consensus_481#0      TCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAAC 545
consensus_481#1      ------------------------------------------------------------
                                                                                 

consensus_481#0      TCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAAC 605
consensus_481#1      ------------------------------------------------------------
                                                                                 

consensus_481#0      AGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAG 665
consensus_481#1      ------------------------------------------------------------
                                                                                 

consensus_481#0      TCGGCAACGGCGGAAGCGAAAGGGGCCCGA 695
consensus_481#1      ------------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)