These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1144 fasta sequence [CCGGTCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGAAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCACTCACTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTACACGCTTTACTTGCAAACAAACGGCAATCTAATGCAGCAATAGTGTATGTTCATGTATGTGTACGTGTAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGATGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGCCGGCGGCGCGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGATCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGCCGGTGTGGGCCGGCTGGGGCACCCGATCGCCTGCCCGGAGACGTGCTCGCTCGAGCTGGTCGAAAGCATCCCGGAGGGTATGGCGTACCCGGACGGCAGCCCCACCTTCCGCACCACCTTCCAGGCGTGGTCGGCGCTGCTCGAGCTGGCCCAGGCGACGGTCGAGATTGGCTCGTTCTACTGGACGCTCAAGGGTGCGGACGTGTACAACCACTCGTCCGCCCGGGAGGGCGAGACGATCTTTCGCAAGCTGTACGAGGCGGGCACGGTGCGCAAGCTGCAGGTGAAAATTGCCCAGAGCGCACCGACGTCGGCGTCGCCCAACCTGGACACGGATCTGCTGGCGAAGCAGGGGGCCGCCCTGGTCCGGTCGGTCGACTTTCCGCGGCTGGTCGGGGGCGGCGTGCTGCACACGAAGGTGTGGCTGATCGACCGGAACCACTTCTATCTGGGCAGCGCCAACATGGACTGGCGGTCGCTGACGCAGGTGAAGGAGCTGGGCGT] [+] EMBL BM576917 [CCGGTCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGAAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCACTCACTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTACACGCTTTACTTGCAAACAAACGGCAATCTAATGCAGCAATAGTGTATGTTCATGTATGTGTACGTGTAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGATGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGCCGGCGGCGCGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATG ] [+] EMBL BM600244 [ ccGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGATCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGCCGGTGTGGGCCGGCTGGGGCACCCGATCGCCTGCCCGGAGACGTGCTCGCTCGAGCTGGTCGAAAGCATCCCGGAGGGTATGGCGTACCCGGACGGCAGCCCCACCTTCCGCACCACCTTCCAGGCGTGGTCGGCGCTGCTCGAGCTGGCCCAGGCGACGGTCGAGATTGGCTCGTTCTACTGGACGCTCAAGGGTGCGGACGTGTACAACCACTCGTCCGCCCGGGAGGGCGAGACGATCTTTCGCAAGCTGTACGAGGCGGGCACGGTGCGCAAGCTGCAGGTGAAAATTGCCCAGAGCGCACCGACGTCGGCGTCGCCCAACCTGGACACGGATCTGCTGGCGAAGCAGGGGGCCGCCCTGGTCCGGTCGGTCGACTTTCCGCGGCTGGTCGGGGGCGGCGTGCTGCACACGAAGGTGTGGCTGATCGACCGGAACCACTTCTATCTGGGCAGCGCCAACATGGACTGGCGGTCGCTGACGCAGGTGAAGGAGCTGGGCGT] consensusID : consensus_4813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGGAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCAATTTCTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGTTGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGTCGGCGGCGTGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGACCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGGCCGGTGTGGG] [+] EMBL BM653233 [CCGCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGGAAGAAAAAAAGTAGGCTAAATTTTGCGGTTTTATCTCCAATTTCTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAAATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTTCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGTTGTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGGGCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGTCGGCGGCGTGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCAAGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCATTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGACCACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGGCCGGTGTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4813#0 CCGGTCGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGAAAGAAAAAAAGTAGGCTAAA 60 consensus_4813#1 CCG--CGGGCTCGTCGGCCCAAAACAAAGCGGCCCGTGGGAAGAAAAAAAGTAGGCTAAA 58 *** ********************************** ******************** consensus_4813#0 TTTTGCGGTTTTATCTCCACTCACTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAA 120 consensus_4813#1 TTTTGCGGTTTTATCTCCAATTTCTATCGGGGCTGTTGTCTTTACATCCAAAGCATATAA 118 ******************* * ************************************* consensus_4813#0 ATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGTACACGCTTTACTT 180 consensus_4813#1 ATACACGCAACATTACCACCAGCAAGTGCGCCATATGTTGAAAAGGT------------- 165 *********************************************** consensus_4813#0 GCAAACAAACGGCAATCTAATGCAGCAATAGTGTATGTTCATGTATGTGTACGTGTAGGT 240 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 TCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGAT 300 consensus_4813#1 TCGTGGCAGATCCCGACTCCGGTTGACGTCGCACCAGTAGCACCAGCGGGCTTATTCGTT 225 ********************************************************** * consensus_4813#0 GTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGG 360 consensus_4813#1 GTGGTGCTGGCGCTTGGTTTGGCAACACCGGGGGCAGCATGAAACTGCAGCTGACCATGG 285 ************************************************************ consensus_4813#0 GCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGCCGGCGGCG 420 consensus_4813#1 GCCGCAGTCAGAGTCCGGCGATGGACAAGGATTCGGAGGTGGCGAAAGGGGTCGGCGGCG 345 *************************************************** ******** consensus_4813#0 CGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCA 480 consensus_4813#1 TGTACGAGGCCGCGTCCGTGAGCGGGCCGGAGGACGACTTCGAGCTGTGGGACCAGAGCA 405 *********************************************************** consensus_4813#0 AGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCA 540 consensus_4813#1 AGGCGCTGCGGTCGGAGTACCGGGACAATCGCTGGAGCCAGAACGGCTGGAGCTCGTGCA 465 ************************************************************ consensus_4813#0 TTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGATC 600 consensus_4813#1 TTCCGATCACGATCATACTGGTGCTGATAGTGCTGGTGGTGCTGCTGCCACTGATGGACC 525 ********************************************************** * consensus_4813#0 ACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGG-CCGGTGTGGGCCGGCTGGGG 659 consensus_4813#1 ACAGTGAGCGGGCGGGCGAGACCGGCGAGCCGGCCCGGGGCCGGTGTGGG---------- 575 *************************************** ********** consensus_4813#0 CACCCGATCGCCTGCCCGGAGACGTGCTCGCTCGAGCTGGTCGAAAGCATCCCGGAGGGT 719 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 ATGGCGTACCCGGACGGCAGCCCCACCTTCCGCACCACCTTCCAGGCGTGGTCGGCGCTG 779 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 CTCGAGCTGGCCCAGGCGACGGTCGAGATTGGCTCGTTCTACTGGACGCTCAAGGGTGCG 839 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 GACGTGTACAACCACTCGTCCGCCCGGGAGGGCGAGACGATCTTTCGCAAGCTGTACGAG 899 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 GCGGGCACGGTGCGCAAGCTGCAGGTGAAAATTGCCCAGAGCGCACCGACGTCGGCGTCG 959 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 CCCAACCTGGACACGGATCTGCTGGCGAAGCAGGGGGCCGCCCTGGTCCGGTCGGTCGAC 1019 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 TTTCCGCGGCTGGTCGGGGGCGGCGTGCTGCACACGAAGGTGTGGCTGATCGACCGGAAC 1079 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 CACTTCTATCTGGGCAGCGCCAACATGGACTGGCGGTCGCTGACGCAGGTGAAGGAGCTG 1139 consensus_4813#1 ------------------------------------------------------------ consensus_4813#0 GGCGT 1144 consensus_4813#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||