These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence [GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGGCTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGTTTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAACAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGCCGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAACCGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACAT---TACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTA-CCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACCTTTTTGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACCATCATTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCGCTGCACGGTTTATTTAAGCACA] [+] EMBL BX466843 [GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGGCTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGTTTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAACAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGCCGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAACCGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACAT TACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTA CCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACCTTTTTGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACCATCATTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCGCTGCACGGTTTATTTAAGCACA] [-] EMBL BM636950 [ CAACAGTTGTGATAGGTTAGATTGCACAGATTAATTAACGGCGTGCATACGTTTGGTACGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAACAATATCTCTTTCTGGTTCGTAGCAGCTAAGTGACCTTAATTTTAGCAAGGATACTTTGCCGTCCTAACAGTACAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAACCGCAACGCTGGTCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGC ACAAGAAGCGAGTAAAAC TTTTGA GCAG CCTGTTTTTT GT TATTTCGATG CGTC ATCTCA GACAA CATCA TGTGATCTGCC TTCA GTAATCTCGACTTTA CGGA GAGGAA CATTT GCGCTGCAC GTTTATTTAgccgg ] consensusID : consensus_4817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [ACCGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCACAAGAAGCGAGTAAAACTTTTGAGCAGCCTGTTTTTTGTTATTTCGATGCGTCATCTCAGACAACATCATGTGATCTGCCTTCAGTAATCTCGACTTTACGGAGAGGAACATTTGCGCTGCACGTTTATTTAGCACACGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTGCTCCTCGTTAGGATGGGTAGCACCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATCATTAGCTATTTCCTCGGAGGTGTTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCCGGGTTCGTTGAGAATGGAGGAAACTTGATCGGCCGG] [-] EMBL BM641610 [ACCGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTACATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGTATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCCTGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGGTTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCACAAGAAGCGAGTAAAACTTTTGAGCAGCCTGTTTTTTGTTATTTCGATGCGTCATCTCAGACAACATCATGTGATCTGCCTTCAGTAATCTCGACTTTACGGAGAGGAACATTTGCGCTGCACGTTTATTTAGCACACGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTGCTCCTCGTTAGGATGGGTAGCACCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATCATTAGCTATTTCCTCGGAGGTGTTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCCGGGTTCGTTGAGAATGGAGGAAACTTGATCGGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4817#0 GCTGTTTTCCTGTTGTTTTNTTTTATACTTTAACGTCAGCAAATGAGTACGTCGCCAGGG 60 consensus_4817#1 ------------------------------------------------------------ consensus_4817#0 CTAAGAAGCAACAGTTGTGATAGGTCAGATTGCACAGATTAATTAACGGCGTGCATACGT 120 consensus_4817#1 ------------------------------------------------------------ consensus_4817#0 TTGGTAGGGGAAACTCTTACTTCTCTTCAGCTGCACGAGCAGCCGGGATGATACAGAAAA 180 consensus_4817#1 ------------------------------------------------------------ consensus_4817#0 CAATATCTCTTTCTGGTTCGTAGCAACTAAGTGACCTTAATTTTAGCAAGGATACTTTGC 240 consensus_4817#1 ------------------------------------------------------------ consensus_4817#0 CGTCCCGACAGCGCAAACGATTCTAGACACGCCGTCAATCGATATCGCAAACTGACGAAC 300 consensus_4817#1 ----------------------------------------------------------AC 2 ** consensus_4817#0 CGCAACGCTGGTCCC-GTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTAC 359 consensus_4817#1 CGCAACGCTGGTCCCCGTGCTAAGAAGCCACACGTACGTGCTCTCTTATTGCATCAGTAC 62 *************** ******************************************** consensus_4817#0 AT---TACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGT 416 consensus_4817#1 ATCAGTACCCTCCCAGCCCTGATGCAGCACACATTAACATCCCTACCATTTGCACGCTGT 122 ** ******************************************************* consensus_4817#0 ATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCC 476 consensus_4817#1 ATAAAATCTACTTTACAAGAAAGTTACTACCAGAGCAACGTAGGCTACACTCGGTAGCCC 182 ************************************************************ consensus_4817#0 TGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTCACGGTGATGTCATCGTAAGG 536 consensus_4817#1 TGCTTACAGCTTAGGATTATCGAACAACGGGCCTCTCGTAACGGTGATGTCATCGTAAGG 242 *************************************** ******************** consensus_4817#0 TTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGCGACAAGAAGCGAGTAAAACC 596 consensus_4817#1 TTGCTTCTGCGAGATTTCCAATGCCTTGAACTTTTTCAGC-ACAAGAAGCGAGTAAAACT 301 **************************************** ****************** consensus_4817#0 TTTTTGAGGCAGCCCTGGTNTATGNCGTCTATTTCGATGCCGTCNTTCTCAGGACAAACC 656 consensus_4817#1 TTT---GAGCAGCC-TGTTTTTTGT----TATTTCGATGC-GTCAT-CTCAG-ACAA--C 348 *** ****** ** * * ** *********** *** * ***** **** * consensus_4817#0 ATCATTGTGATCTGCCTTTCAGGTAATCTCGACTTTACCGGANGAGGAACCATTTTGGCG 716 consensus_4817#1 ATCAT-GTGATCTGCCTTC--AGTAATCTCGACTTTAC--GGAGAGGAAC-ATTT--GCG 400 ***** ************ **************** * ******* **** *** consensus_4817#0 CTGCACGGTTTATTTAAGCACA-------------------------------------- 738 consensus_4817#1 CTGCACG-TTTATTTA-GCACACGTTCCTCAAACTGCTCGATCGTTTCATCCACTTGCTG 458 ******* ******** ***** consensus_4817#0 ------------------------------------------------------------ consensus_4817#1 CTCCTCGTTAGGATGGGTAGCACCGACAGAAGGTGGGAACTCATAGTCACCATTCCAATC 518 consensus_4817#0 ------------------------------------------------------------ consensus_4817#1 ATTAGCTATTTCCTCGGAGGTGTTGCCATCGAATCCCATATTCGAAAAACCTTCCATTCC 578 consensus_4817#0 ------------------------------------ consensus_4817#1 GGGTTCGTTGAGAATGGAGGAAACTTGATCGGCCGG 614 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||