These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCACGTCTACCTGGAGGGTACGCTGCTGAAGCCGAACATGGTGACGGCCGGCCAGAGCTGCGCCAAGAAGCCGACCGCCCAGGAGATTGCGCTCGCCACCGTGACCGCACTGCGCCGCACCGTGCCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGGCGTCCGTGAACCTGAGCGCCATCAACCAGGTGCCGCTGCTGAGACCGTGGGCCCTGACCTTCTCGTACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAGGAGAACGTGAAGGCCGCCCAGGAGGAGCTGATCAAGCGCGCAAAGGCCAACAGCGATGCCGCCCTCGGCAAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTGGCAGCCTGTTCGTCGCCAACCACGCTTACTAAGGCGTTCGTTCGCTCCGCTCTGCATCTACATGAACTTGCATCCCACTAGAACACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCGCCACATGCACACACACTCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCATTCGGTTACTATGCTGAGTGTAAGTGAAGAATTAGCAGCAGCAGT] [+] EMBL BM620154 [CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCACGTCTACCTGGAGGGTACGCTGCTGAAGCCGAACATGGTGACGGCCGGCCAGAGCTGCGCCAAGAAGCCGACCGCCCAGGAGATTGCGCTCGCCACCGTGACCGCACTGCGCCGCACCGTGCCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGGCGTCCGTGAACCTGAGCGCCATCAACCAGGTGCCGCTGCTGAGACCGTGGGCCCTGACCTTCTCGTACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAGGAGAACGTGAAGGCCGCCCAGGAGGAGCTGATCAAGCGCGCAAAGGCCAACAGCGATGCCGCCCTCGGCAAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTGGCAGCCTGTTCGTCGCCAACCACGCTTACTAAGGCGTTCGTTCGCTCCGCTCTGCATCTACATGAACTTGCATCCCACTAGAACACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCGCCACATGCACACACACTCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCATTCGGTTACTATGCTGAGTGTAAGTGAAGAATTAGCAGCAGCAGT] consensusID : consensus_4849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCGGATATAGAGAGGCCAACAACACAAAGCACGGCGTCATAGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTGTTGTTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCTTTCTGTCCCCTTTTTTTGTTGTTGTTGTCGTGCCTACATTACAATATGCGTGTAATCGTGTACGCGAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACCACTCCAACGGATCGTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGGTCTTGAAGCGCCCGCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGGTGGGGAAAGCGGGAAAGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCATTTGTTGTAGCTCGCCTTCGCTGCGTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAGAAGCANGAGAANGAGGGAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTGCAATGTACTCGTCGCGTTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACTGCGTTCTGTAGCTAATGTGAATTAAATGTCATGATGCTTATCCT] [+] EMBL BX620503 [GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCGGATATAGAGAGGCCAACAACACAAAGCACGGCGTCATAGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTGTTGTTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCTTTCTGTCCCCTTTTTTTGTTGTTGTTGTCGTGCCTACATTACAATATGCGTGTAATCGTGTACGCGAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACCACTCCAACGGATCGTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGGTCTTGAAGCGCCCGCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGGTGGGGAAAGCGGGAAAGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCATTTGTTGTAGCTCGCCTTCGCTGCGTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAGAAGCANGAGAANGAGGGAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTGCAATGTACTCGTCGCGTTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACTGCGTTCTGTAGCTAATGTGAATTAAATGTCATGATGCTTATCCT] consensusID : consensus_4849#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [ATCGCAGAGGTTAAATCAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAAGGACCAATACAAACCCGTCGCCGATGTGAAACGCCACCGAGGAACGCTGGAAGGGCGCTGAAACGAAATTCGATGCGGGGCCATTTTGCCGCATGAAAATGACATACGAAGACCCTTTCANTTGCGTT] [+] EMBL AL696349 [ATCGCAGAGGTTAAATCAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAAGGACCAATACAAACCCGTCGCCGATGTGAAACGCCACCGAGGAACGCTGGAAGGGCGCTGAAACGAAATTCGATGCGGGGCCATTTTGCCGCATGAAAATGACATACGAAGACCCTTTCANTTGCGTT] consensusID : consensus_4849#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [CCCANGATTAAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATCACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGACTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGAC] [+] EMBL AL933268 [CCCANGATTAAGTGGCTTGGAGCATCATCCGCCATTAATTCCGAACGAGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATCACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGACTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4849#2 -------------------------------------------ATCGCAGAGGTTAAATC 17 consensus_4849#3 ----------------------------------------------CCCANGATTAA--- 11 consensus_4849#0 CGACCCACGCGTCCGGAAACGGTGCTGGCCGCCGTCTACAAGGCGCTGAACGACCATCAC 60 consensus_4849#1 -GTGTCGCTCTTGNNGGGGGAAAGGGGGGTGGCGTTGGCG-GATATAGAGAGGCCAACAA 58 * * consensus_4849#2 AGTGGCTTGGAGCATCATCCGCCATTAATTCCGAAA--CGAGGAAGTAAAAG-TAAGTAG 74 consensus_4849#3 -GTGGCTTGGAGCATCATCCGCCATTAATTCCGAA---CGAGGAAGTAAAAG-TAAGTAG 66 consensus_4849#0 GTCTACCTGGAGGGTA---CGCTGCTGAAGCCGAACATGGTGACGGCCGGCC-AGAGCTG 116 consensus_4849#1 CACAAAGCACGGCGTCAT-AGCCACGGGCGGCACATTAGGGACTGATATGCGCTTAGTTG 117 * * ** * * * ** * consensus_4849#2 CCCCGACTATCGGAACATGAACATGGG-ATGAAGCGTTGTCG-GACTTC-CGGCTGCGCA 131 consensus_4849#3 CCCCGACTATCGGAACATGAACATGG--ATGAAGCGTTGTCG-GACTTC-CGGCTGCGCA 122 consensus_4849#0 CGCCAAGAAGCCGACCGCCCAGGAGAT-TGCGCTCGCCACCGTGACCGCACTGCGCCGCA 175 consensus_4849#1 T--TGTTTAGCAATATTTTCGTTAGTTGTGTACGTACACGCGTATTTTCCCAGCTTTCCT 175 * * * ** * * ** * consensus_4849#2 TCGAGC--ACTACCAGGAACGGTACGAGCC----GCTGAGCGAGGAGCTGGAGAAGGATC 185 consensus_4849#3 TCGAGC--ACTACCAGGAACGGTACGAGCC----GCTGAGCGAGGAGCTGGAGAAGGATC 176 consensus_4849#0 CCGTGCCGGCCGCCGTGCCCGGCGTCACCTTCCTGTCGGGCGGCCAGTCCGAGGAGGAGG 235 consensus_4849#1 TTCTGT---CCCCTTTTTTTGTTGTTGTT-----GTCGTGCCTACATTACAATATGCGTG 227 * * * * * * ** * * * consensus_4849#2 TGTCCT---ACATGAA-GATCTACAACACGGGCGAAAAGGTGGT--GGTGCACAAGCACG 239 consensus_4849#3 TGTCCT---ACATGAA-GATCTACAACACGGGCGAAAAGGTGGT--GGTGCACAAGCACG 230 consensus_4849#0 CGTCCGTGAACCTGAG-CGCCATCAAC-CAGGTGCCGCTGCTGA--GACCGTGGGCCCTG 291 consensus_4849#1 TAATCGTGTACGCGAACGATGCGTAGTGCTCACGCAGAAGGAGACGAAGGACGAAGCACC 287 * ** ** * * * * * * consensus_4849#2 AGGGACACATACAGTCGCGCATCGTGTACTATC-TGATGAACATTCACATTACCCCCAGA 298 consensus_4849#3 AGGGACACATACAGTCGCGCATCGTGTACTATC-TGATGAACATTCACATCACCCCCAGA 289 consensus_4849#0 ACCTTCTCGTACGGTCGCGCCCTGCAGGCCTCGGTGCTGCGCGCCTGGGGCGGCAAGAAG 351 consensus_4849#1 ACTCCAACGGATCGTCCCGCTGGGCACGCTTGGACGTCTCGCGATCGCTGTAGTAGACGG 347 * * * *** *** * * * * consensus_4849#2 ACGATC-------TATCTCACCAGACACG----GAGAAAGCGAACACAA-CCTACAGGGA 346 consensus_4849#3 ACGATC-------TATCTCACCAGACACG----GAGAAAGCGAACACAA-CCTACAGGGA 337 consensus_4849#0 GAGAACGTGAAGGCCGCCCAGGAGGAGCT----GATCAAGCGCGCAAAGGCCAACAGCGA 407 consensus_4849#1 TC--TTGAAGCGCCCGCCTGTCGGGAACTCCGTGAAGAAGGGTGACCAAGAAGGGAGGGG 405 * * * ** *** * * ** * consensus_4849#2 C-TGATCGGTGGCGATTCCAAT--CTGAGCGAACGGGGCCGCCGCTACGC-GCAGGCACT 402 consensus_4849#3 C-TGATCGGTGGCGACTCCAAT--CTGAGCGAACGGGGCCGCCGCTACGC-GCAGGCACT 393 consensus_4849#0 TGCCGCCCTCGGCAAGTACGGCGGTGGTGTGGAGGGTGCCGCCGGTGCTG-GCAGCCTGT 466 consensus_4849#1 TGGGGAAAGCGGGAAAGGAAATAGAACAAAGGTAACGTTTATTTATATTGTGCTGCGCAT 465 ** * * * ** * * consensus_4849#2 T----GCCAAGTACATCGACGA--GCAGCAGATCG--AAGGACTGCGCGTGTGGACGTCC 454 consensus_4849#3 T----GCCAAGTACATCGACGA--GCAGCAGATCG--AAGGGCTGCGCGTGTGGACGTCC 445 consensus_4849#0 TCGTCGCCAACCACGCTTACTAAGGCGTTCGTTCG--CTCCGCTCTGCATCTACATGAAC 524 consensus_4849#1 TTGTTGTAGCTCGCCTTCGCTGC-GTAGAGGATCGCAAAGTGCATTGTGTGAAGGAGGAG 524 * * * * * * *** * * * * consensus_4849#2 TGGC--TCAAAAAGGACCAATACAAACCCGTCGCCG-ATGTGAAACGCCACCGAGGAACG 511 consensus_4849#3 TGGC--TCAAAA-GGAC------------------------------------------- 459 consensus_4849#0 TTGCATCCCACTAGAACACACCCTTTAGTACCACCCCACCTCCCCCTGTCCCTCGTCCCG 584 consensus_4849#1 AAGCANGAGAANGAGGGAAAAAGGCAACTACAACAAAAACTCTTCGGGTGCATTATCTTG 584 ** * consensus_4849#2 CTGGAAGGGCGCTGAAACGAAATTCGATGCGGGGCCATTTTGCCGCATGAAAATG-ACAT 570 consensus_4849#3 ------------------------------------------------------------ consensus_4849#0 CCACATGCACACACACTCGCACAGTGGCAAACAACACTCCCGGAGCGGCAATCTTCGCAT 644 consensus_4849#1 CAATGTACTCGTCGCGTTTGAATTGGCCGGTGAAATCGTTTCTTACTGTATACT--GCGT 642 consensus_4849#2 ACGAAGACCCTTTCANTTGCGTT--------------------- 593 consensus_4849#3 -------------------------------------------- consensus_4849#0 TCGGTTACTATGCTGAGTGTAAGTGAAGAATTAGCAGCAGCAGT 688 consensus_4849#1 TCTGTAGCTAATGTGAATTAAATGTCATGATGCTTATCCT---- 682 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||