cluster # 4852

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Anopheles gambiae
cluster # 4852 cluster # 4852 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4852#0 length = 963 sequences # 2

consensus_4852#1 length = 651 sequences # 1
consensus_4852#2 length = 221 sequences # 1

consensusID : consensus_4852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 963
fasta sequence

                              [GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGATGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGAGGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCGGCGTCAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCGAGCGTGGTCGTGGAACCACGGGTGGTGGTATAGCAATCGTCAATACCAGCCATCTGCAGCAGCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGACGCACCAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCGATGTGACCGT]

[+] EMBL CNS09KV1             [GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGATGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGAGGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCGGCGTCAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCGAGCGTGGTCGTGGAACCACGGGTGGTGGTATAGCAATCGTCAATACCAGCCATCTGCAGCAGCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGACGCACCAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAA                                                                                              ]
[-] EMBL CNS09KV0             [                                                                                                                                                                                                                                                                                                                                                                    GCACCAGAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCGATGTGACCGT]




>consensus_4852#0
GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGA
TGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGA
GGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCG
GCGTCAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCGA
GCGTGGTCGTGGAACCACGGGTGGTGGTATAGCAATCGTCAATACCAGCCATCTGCAGCA
GCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGACGCAC
CAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTA
TAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAG
GCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTAC
GACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGG
ACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGT
TAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCT
AAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTC
ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGG
CGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTT
ATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCGATGTGAC
CGT

consensusID : consensus_4852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGACGAATTGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT]

[+] EMBL BM607286             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGACGAATTGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT]




>consensus_4852#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGACGAATTGTCAACCGCGGATTGGAGCAG
CAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTG
CGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTG
GTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGT
AGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGA
TAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGA
TGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGA
TCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCA
AGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCG
CCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACG
TCGTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT

consensusID : consensus_4852#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [TGAACTACTACAACTAACATTAGAAATGGATNAGGAAATATGNATACCCGTGAAATATGTGAAAATGTTACAACAAGAGTACTTACAACCTGGTCTACTCCATCCCGTCTTATTCCTTATACCGTGCTGTTCTCTTAATGAAGCTCACGACACGTGCTCCCTCTTTTGCCTGTCGCTGCGTGCCATAGGAAACTCGCGTGCGAGGGCAAAAACTCAGTGTN]

[+] EMBL BX619342             [TGAACTACTACAACTAACATTAGAAATGGATNAGGAAATATGNATACCCGTGAAATATGTGAAAATGTTACAACAAGAGTACTTACAACCTGGTCTACTCCATCCCGTCTTATTCCTTATACCGTGCTGTTCTCTTAATGAAGCTCACGACACGTGCTCCCTCTTTTGCCTGTCGCTGCGTGCCATAGGAAACTCGCGTGCGAGGGCAAAAACTCAGTGTN]




>consensus_4852#2
TGAACTACTACAACTAACATTAGAAATGGATNAGGAAATATGNATACCCGTGAAATATGT
GAAAATGTTACAACAAGAGTACTTACAACCTGGTCTACTCCATCCCGTCTTATTCCTTAT
ACCGTGCTGTTCTCTTAATGAAGCTCACGACACGTGCTCCCTCTTTTGCCTGTCGCTGCG
TGCCATAGGAAACTCGCGTGCGAGGGCAAAAACTCAGTGTN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4852#1      ------------------------------------------------------------
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGA 60
                                                                                  

consensus_4852#1      ------------------------------------------------------------
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      TGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGA 120
                                                                                  

consensus_4852#1      ----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGTTCG 32
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCG 180
                                                                                  

consensus_4852#1      ACGAATTGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGC 92
consensus_4852#2      ---------------TGAACTACTACAAC--TAACATTAGAAATGGATNAGGAAATATGN 43
consensus_4852#0      GCGT-CAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCG 239
                                               **       *    *          * *       

consensus_4852#1      ACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAG---G 149
consensus_4852#2      A----TACCCGTGAAATATGTGAAAATGT---TACAACAAGAGTACTTACAACCTG---G 93
consensus_4852#0      AGCG-TGGTCGTGGAACCACGGGTGGTGG---TATAGCAATCGTCAATACCAGCCATCTG 295
                      *    *   **    *          **    *    *    **   * * *       *

consensus_4852#1      TGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCC--------CAGGATACAG 201
consensus_4852#2      TC-TACTCCATCCCGTCTTATTCCTTATACCGTG-CTGTTCT--------CTTAATGAAG 143
consensus_4852#0      CAGCAGCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGA 355
                          *     * *          *        *  * ** *         *   **    

consensus_4852#1      CACAC-ACGGCGCTGATCCTCTCGA-GCTGAGCA-GAGCAGTAGGCTGTGAAGGAAATTC 258
consensus_4852#2      CTCAC-GACACGTGCTCCCTCTTTT-GCCTGTC----GCTGCGTGCCAT--AGGAAACTC 195
consensus_4852#0      CGCACCAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCT 415
                      * ***     **      * **    **    *     * *   *   *   **  *   

consensus_4852#1      GCTTTTCCTTC---------CGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACG 309
consensus_4852#2      GCGTGCGAGGG---------CAAAAACTCAG-TGTN------------------------ 221
consensus_4852#0      AGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTT 475
                         *                *       **   *                          

consensus_4852#1      ACGTGTACCACCATCA-CCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCT 368
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTG 535
                                                                                  

consensus_4852#1      AACGCAACGGTGGAGGCAACCGGTGT--GCTGAACGAGCTGGACGCCGAAACGATCGACG 426
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCG 595
                                                                                  

consensus_4852#1      G-CGGACTGGCGAAGGATGTGACGCC---GCTGAAGCGTGCCGAGAAGCGCAAGATCAAG 482
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAAT 655
                                                                                  

consensus_4852#1      CTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCC 542
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      TCCGTTAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGAC 715
                                                                                  

consensus_4852#1      TTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTC 602
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTT 775
                                                                                  

consensus_4852#1      GTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT----------- 651
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      GCTTCACAATGATAGGA--AGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAA 833
                                                                                  

consensus_4852#1      ------------------------------------------------------------
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      CGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAA 893
                                                                                  

consensus_4852#1      ------------------------------------------------------------
consensus_4852#2      ------------------------------------------------------------
consensus_4852#0      ACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCG 953
                                                                                  

consensus_4852#1      ----------
consensus_4852#2      ----------
consensus_4852#0      ATGTGACCGT 963