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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1506 fasta sequence
[GTGGATTCGATCGCACGCACCAAGGATGCCGGCTGCCGGCCGTACATGGCGCCCGAACGCATCGATCCCCAGCGCGCTAAGGGCTATGACGTGCGCAGTGACGTGTGGTCGCTCGGAATTACGCTGATGGAGGTGGCGACCGGGAAGTTCCCCTATCCAAAGTGGGGCTCCGTGTTTGAGCAGCTTTCACAGGTTGTCGAAGGTGACCCGCCTAGACTGTCCACCACCTACAATGGGATGGAATTTTCGATAGATTTTGTAAATTTTGTAAATACCTGTTTAATAAAGGACGAGCGCGATCGTCCCAAGTACGGTCGGCTGTTGCAGCATCCGTTCATTCAGCAGGCCGAAAAGAGTGACACTGACGTAGCGGCGTACGTAAGCGAAGTGCTGGAATCGATGGCCAACAATGGTATCACGCAGTTTACCACGGACCTGCCAGCGGAAGGTTGGAACGAAAGCTTCAATTAGGGTGTGAGCAGTGGGAAAACAGTTACCCCGTTACGCAATATGCATAATATCTATTCGTTCCGGTAGAAACGTATCAAACGACGTGTAAGTTAGGTCGCATTTTGATTGTGCACTATCTTTTGTTTAAAAATTCCACCTCTCACTCTCTCCACACCTGTCCAAACGTTCTAGTCTAGTTTTGAAAGATACATTCGGCATAGATTCGTTGCATTGTGCAATTACTATCGAATTTNCCTACCTCTCTATTTCAGTTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTTGCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTAAAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTTTTTTTTCATGGATACACAACATTGTGGCAATTCGGATTGATTTCTGATTAAGCATTCGTTTTTTTTTAAAGAAACAAAACACACGAGATTCTTTGATAGGTAAAGTAAACAT--TTTAAAAGAAAAACGGACAAATGCGCAGGAATTTATCCCGGTCAGGAATAAAGGCAGATTTTGTTCGTAAACATTCAAACAACTACTACCATTCACTCACATACACAATTACAAATAATCACACACAAACACACACAATTAGCAAGTAAGTAGCAAAGCAAAGCAAAATTAGGCTCCTTGTGTAATCCTCATTTTGTTGTGCACCCCAGAATGAATGGAAGGAACCGGGACGATTTCTGGACGAGTAAGGATAAAACAGTAAAAGCTGATAACACGATGTGTAAACGTGGAAGAGAGTGGGAAGGGAAGGGAAAGAGATGAATAACATTCATATGTAGAACCTACAATATCCTACACAGTTGGTTGTTGTTAGTTGTTGAAAAGCGGGGAAAACAAAAACGTANGCAAAATGTGATCCTTTTGACTGGGTTTCATTTTTCTATTAAAGCCATTTTGTGATGCAATGATGAGATAAATGATAGTAGCGATTAGCNAACTG]
[+] EMBL BX625589 [GTGGATTCGATCGCACGCACCAAGGATGCCGGCTGCCGGCCGTACATGGCGCCCGAACGCATCGATCCCCAGCGCGCTAAGGGCTATGACGTGCGCAGTGACGTGTGGTCGCTCGGAATTACGCTGATGGAGGTGGCGACCGGGAAGTTCCCCTATCCAAAGTGGGGCTCCGTGTTTGAGCAGCTTTCACAGGTTGTCGAAGGTGACCCGCCTAGACTGTCCACCACCTACAATGGGATGGAATTTTCGATAGATTTTGTAAATTTTGTAAATACCTGTTTAATAAAGGACGAGCGCGATCGTCCCAAGTACGGTCGGCTGTTGCAGCATCCGTTCATTCAGCAGGCCGAAAAGAGTGACACTGACGTAGCGGCGTACGTAAGCGAAGTGCTGGAATCGATGGCCAACAATGGTATCACGCAGTTTACCACGGACCTGCCAGCGGAAGGTTGGAACGAAAGCTTCAATTAGGGTGTGAGCAGTGGGAAAACAGTTACCCCGTTACGCAATATGCATAATATCTATTCGTTCCGGTAGAAACGTATCAAACGACGTGTAAGTTAGGTCGCATTTTGATTGTGCACTATCTTTTGTTTAAAAATTCCACCTCTCACTCTCTCCACACCTGTCCAAACGTTCTAGTCTAGTTTTGAAAGATACATTCGGCATAGATTCGTTGCATTGTGCAATTACTATCGAATTTNCCTACCTCTCTATTTCAGTTTATTCAGAAATTAAGCATGTAG ]
[+] EMBL BX622609 [ TTACTATCGAATTT CCTACCTCTCTATTTCAGTTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTTGCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTAAAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTTTTTTTTCATGGATACACAACATTGTGGCAATTCGGATTGATTTCTGATTAAGCATTCGTTTTTTTTTAAAGAAACAAAACACACGAGATTCTTTGATAGGTAAAGTAAACAT TTTAAAAGAAAAACGGACAAATGCGCAGGAATTTATCCCGGTCAGGAATAAAGGCAGATTTTGTTCGTAAACATTCAAACAACTACTACCATTCACTCACATACACAATTACAAATAATCACACACAAACACACACAATTAGCAAGTAAGTAGCAAAGCAAAGCAAAATTAGGCTCCTTGTGTAATCCTCATTTTGTTGTGCACCCCAGAATGAATGGAAGGAACCGGGACGATTTCTGGACGAGTAAGGATAAAACAGTAAAAGCTGATAACACGATGTGTAAACGTGGAAGAGAGTGGGAAGGGAAGGGAAAGAGATGAATAACATTCATATGTAGAACCTACAATATCCTACACAGTTGGTTGTTGTTAGTTGTTGAAAAGCGGGGAAAACAAAAACGTANGCAAAATGTGATCCTTTTGACTGGGTTTCATTTTTCTATTAAAGCCATTTTGTGATGCAATGATGAGATAAATGATAGTAGCGATTAGCNAACTG]
[+] EMBL BX620244 [ TTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTTGCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTAAAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTTTTTTTTCATGGATACACAACATTGTGGCAATTCGGATTGATTTCTGATTAAGCATTCGTTTTTTTTTAAAGAAACAAAACACACGAGATTCTTTGATAGGTAAAGTAAACATAATTTAAAAGAAAAACGGACAAATGCGCAGGAATTTATCCCGGTCAGGAATAAAGGCAGATTTTGTTCGTAAACATTCAAACAACTACTACCATTCACTCACATACACAATTACAAATAATCACACACAAACACACACAATTAGCAAGTAAGTAGCAAAGCAAAGCAAAATTAGGCTCCTTGTGTAATCCTCATTTTGTTGTGCACCCCAGAATGAATGGAAGGAACCGGGACGATTTCTGGACGAGTAAGGATAAAACAGTAAAAGCTGATAACACGATGTGTAAACGTGGAAAANAGTGGGAAG ]
consensusID : consensus_4853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[AGAATCCGCACGGAGTGGAATTGTGCAATTACTATCGAATTTCCTACCTCTCTATTTCAGTTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTTGCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTAAAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTGTTTCTGTGTGTCATGGATACACAACATTGTGGCAATTCGGATTGAGTTTCGTGATTAAGCATTCGTTTNCTTTNGTAAAGCAAACAGAACACACGAGATTCTCTTTGCATAGGCTCNACAGTAACCCATAATNNTAACAAGAACACAACGGACAAATGCGCAGGAATTTNTCCCGGGTCAGGACATAAAGGCAGCATTTGTCGTCC]
[+] EMBL BX466121 [AGAATCCGCACGGAGTGGAATTGTGCAATTACTATCGAATTTCCTACCTCTCTATTTCAGTTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTTGCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTAAAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTGTTTCTGTGTGTCATGGATACACAACATTGTGGCAATTCGGATTGAGTTTCGTGATTAAGCATTCGTTTNCTTTNGTAAAGCAAACAGAACACACGAGATTCTCTTTGCATAGGCTCNACAGTAACCCATAATNNTAACAAGAACACAACGGACAAATGCGCAGGAATTTNTCCCGGGTCAGGACATAAAGGCAGCATTTGTCGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4853#0 GTGGATTCGATCGCACGCACCAAGGATGCCGGCTGCCGGCCGTACATGGCGCCCGAACGC 60
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 ATCGATCCCCAGCGCGCTAAGGGCTATGACGTGCGCAGTGACGTGTGGTCGCTCGGAATT 120
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 ACGCTGATGGAGGTGGCGACCGGGAAGTTCCCCTATCCAAAGTGGGGCTCCGTGTTTGAG 180
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 CAGCTTTCACAGGTTGTCGAAGGTGACCCGCCTAGACTGTCCACCACCTACAATGGGATG 240
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 GAATTTTCGATAGATTTTGTAAATTTTGTAAATACCTGTTTAATAAAGGACGAGCGCGAT 300
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 CGTCCCAAGTACGGTCGGCTGTTGCAGCATCCGTTCATTCAGCAGGCCGAAAAGAGTGAC 360
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 ACTGACGTAGCGGCGTACGTAAGCGAAGTGCTGGAATCGATGGCCAACAATGGTATCACG 420
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 CAGTTTACCACGGACCTGCCAGCGGAAGGTTGGAACGAAAGCTTCAATTAGGGTGTGAGC 480
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 AGTGGGAAAACAGTTACCCCGTTACGCAATATGCATAATATCTATTCGTTCCGGTAGAAA 540
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 CGTATCAAACGACGTGTAAGTTAGGTCGCATTTTGATTGTGCACTATCTTTTGTTTAAAA 600
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 ATTCCACCTCTCACTCTCTCCACACCTGTCCAAACGTTCTAGTCTAGTTTTGAAAGATAC 660
consensus_4853#1 ----------------------------------------------------------AG 2
*
consensus_4853#0 ATTCGGCATAGATTCGTTGCATTGTGCAATTACTATCGAATTTNCCTACCTCTCTATTTC 720
consensus_4853#1 AATCCGCACGGA---GTGGAATTGTGCAATTACTATCGAATTTCC-TACCTCTCTATTTC 58
* ** *** ** ** * *********************** * **************
consensus_4853#0 AGTTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTT 780
consensus_4853#1 AGTTTATTCAGAAATTAAGCATGTAGAATTTGAAAAAGATCCTTCAGAACAATTCAGTTT 118
************************************************************
consensus_4853#0 GCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTA 840
consensus_4853#1 GCTCGTAACGGACTTAAACTGTCAGCAACAGCAATGTTTTAACTCAAAATCCCAACAGTA 178
************************************************************
consensus_4853#0 AAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTTTTTTT 900
consensus_4853#1 AAATAAGGGCGCGGACAATAATGAACTAGAATTCTGGACAGCGAATTAGTGATTGTTTCT 238
****************************************************** *** *
consensus_4853#0 -----TCATGGATACACAACATTGTGGCAATTCGGATTGATTTC--TGATTAAGCATTCG 953
consensus_4853#1 GTGTGTCATGGATACACAACATTGTGGCAATTCGGATTGAGTTTCGTGATTAAGCATTCG 298
*********************************** ** **************
consensus_4853#0 TTTTTTTTT---AAAGAAACAAAACACACGAGATTCTTTG---ATAGG---TAAAGTAAA 1004
consensus_4853#1 TTTNCTTTNGTAAAGCAAACAGAACACACGAGATTCTCTTTGCATAGGCTCNACAGTAAC 358
*** *** ** ***** *************** * ***** * *****
consensus_4853#0 C----ATTTTAAAAGAAA---AACGGACAAATGCGCAGGAATTTATCCCGG-TCAGGA-A 1055
consensus_4853#1 CCATAATNNTAACAAGAACACAACGGACAAATGCGCAGGAATTTNTCCCGGGTCAGGACA 418
* ** *** * ** *********************** ****** ****** *
consensus_4853#0 TAAAGGCAGATTTTGTTCGTAAACATTCAAACAACTACTACCATTCACTCACATACACAA 1115
consensus_4853#1 TAAAGGCAGCATTTGT-CGTCC-------------------------------------- 439
********* ***** ***
consensus_4853#0 TTACAAATAATCACACACAAACACACACAATTAGCAAGTAAGTAGCAAAGCAAAGCAAAA 1175
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 TTAGGCTCCTTGTGTAATCCTCATTTTGTTGTGCACCCCAGAATGAATGGAAGGAACCGG 1235
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 GACGATTTCTGGACGAGTAAGGATAAAACAGTAAAAGCTGATAACACGATGTGTAAACGT 1295
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 GGAAGAGAGTGGGAAGGGAAGGGAAAGAGATGAATAACATTCATATGTAGAACCTACAAT 1355
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 ATCCTACACAGTTGGTTGTTGTTAGTTGTTGAAAAGCGGGGAAAACAAAAACGTANGCAA 1415
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 AATGTGATCCTTTTGACTGGGTTTCATTTTTCTATTAAAGCCATTTTGTGATGCAATGAT 1475
consensus_4853#1 ------------------------------------------------------------
consensus_4853#0 GAGATAAATGATAGTAGCGATTAGCNAACTG 1506
consensus_4853#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||