These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1286 fasta sequence [GATGGGAACAACCAAATGTTTTTTAAACCACCACACTCGCACTTCACTTCAGTGGAATAAAACGGGAGCTGTGGGTAGCACCGATACCGGGGCGACCGTGCTTGACCGGCTTGTAGGTCATCGAGAACTCGCCCAGATAGTGGCCGATCATGTCCGGCCGGATTTCCGTCTGGTTGAACGTCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTACGCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGCGCACTT-CTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAGCGCC-GACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGACGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTAATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTATGCTCAGCGTGTGGTTTCTGTCCACACTGAGCTGACCTTTGGACACCTCCGTTATCGTTTTGGAGATGTACCGCCCCAGTCAAACTCCGCACCTGGCACTGTCCATGACGTGGACCGAAAGGACCTGTCCAGGAGTCTTCGAGCCGGGCGGCGCGCGGAACCGGGGGCAAACGTGACATCATAAACGATCGACCGCGCAGAAGCAGTGCACCACGAATGCACCGACGTACGCAAGCTTGGTACCTTGCGGCCACGGCTCACGGTCGGACAAGCGGGTAACACGCTACACACGACGATGCTACGATGCAGTCTCCCCGGCGGCACCACCCAGCGACACAGTTCACTGAAGAAAATCGATCGAAATCGAACTACTTCAATATTTCCTACTTCCTCACACAAACTA] [+] EMBL CNS08MF0 [GATGGGAACAACCAAATGTTTTTTAAACCACCACACTCGCACTTCACTTCAGTGGAATAAAACGGGAGCTGTGGGTAGCACCGATACCGGGGCGACCGTGCTTGACCGGCTTGTAGGTCATCGAGAACTCGCCCAGATAGTGGCCGATCATGTCCGGCCGGATTTCCGTCTGGTTGAACGTCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTACGCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGCGCACTT CTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAGCGCC GACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGACGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTAATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTA ] [+] EMBL CNS08URU [ CTGGTTGAACGTCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTACGCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGCGCACTTCCTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAG GCCGGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTA ] [-] EMBL CNS09GZ1 [ TTTCGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTATGCTCAGCGTGTGGTTTCTGTCCACACTGAGCTGACCTTTGGACACCTCCGTTATCGTTTTGGAGATGTACCGCCCCAGTCAAACTCCGCACCTGGCACTGTCCATGACGTGGACCGAAAGGACCTGTCCAGGAGTCTTCGAGCCGGGCGGCGCGCGGAACCGGGGGCAAACGTGACATCATAAACGATCGACCGCGCAGAAGCAGTGCACCACGAATGCACCGACGTACGCAAGCTTGGTACCTTGCGGCCACGGCTCACGGTCGGACAAGCGGGTAACACGCTACACACGACGATGCTACGATGCAGTCTCCCCGGCGGCACCACCCAGCGACACAGTTCACTGAAGAAAATCGATCGAAATCGAACTACTTCAATATTTCCTACTTCCTCACACAAACTA] consensusID : consensus_4854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GAATCCCCNAGGTTAAAACGAAATTATCTATCGTGCATTACGTTTACATTTCGGTAGCCGTAGCGTCGCCGAAGGGTCTGGTAGTACCCGTGCTGAGAAATGTGGAAGGTATGAACTACGCCGATATCGAGCTGGCCATCGCTGGACTGGCGGATAAGGCGAAAAAGGGGACGTTGGCCGTAAGGACATGGATGGTGGCACCTTTACATCTCGAACGGTGGAGTGTTCGGATCGCTGCTCGGAGCCCATCATCAATCCTCCGCAGAGCGCATTCTTGGCATGCACGGCATCTTCGAGCGAACCGATCAGCTGTNAAAGGGAACAGGTGGTAATTCCGACCATGATGTACGTANCCTGTACTACGACCATTCGGTTGATTGATGGACGGTGAGGCGTGTCGACCTTCCTCTGCCGCAANGTGAAAGGCCCGATGTACGAAGGATCNCTTNNCATTCTGTTGCTGGCCCGGTCTGTAAAACGAACAGTTAACACAACAATCAAAAACNCCTGGCTGCGTTTCACCGAAGACCGGATCTCTTTTGACNCGAACTCACACATTCTGAGACAGGAAAGTGTCAAAAACAGCAGCGAAA] [+] EMBL AL692937 [GAATCCCCNAGGTTAAAACGAAATTATCTATCGTGCATTACGTTTACATTTCGGTAGCCGTAGCGTCGCCGAAGGGTCTGGTAGTACCCGTGCTGAGAAATGTGGAAGGTATGAACTACGCCGATATCGAGCTGGCCATCGCTGGACTGGCGGATAAGGCGAAAAAGGGGACGTTGGCCGTAAGGACATGGATGGTGGCACCTTTACATCTCGAACGGTGGAGTGTTCGGATCGCTGCTCGGAGCCCATCATCAATCCTCCGCAGAGCGCATTCTTGGCATGCACGGCATCTTCGAGCGAACCGATCAGCTGTNAAAGGGAACAGGTGGTAATTCCGACCATGATGTACGTANCCTGTACTACGACCATTCGGTTGATTGATGGACGGTGAGGCGTGTCGACCTTCCTCTGCCGCAANGTGAAAGGCCCGATGTACGAAGGATCNCTTNNCATTCTGTTGCTGGCCCGGTCTGTAAAACGAACAGTTAACACAACAATCAAAAACNCCTGGCTGCGTTTCACCGAAGACCGGATCTCTTTTGACNCGAACTCACACATTCTGAGACAGGAAAGTGTCAAAAACAGCAGCGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4854#0 GATGGGAACAACCAAATGTTTTTTAAACCACCACACTCGCACTTCACTTCAGTGGAATAA 60 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 AACGGGAGCTGTGGGTAGCACCGATACCGGGGCGACCGTGCTTGACCGGCTTGTAGGTCA 120 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 TCGAGAACTCGCCCAGATAGTGGCCGATCATGTCCGGCCGGATTTCCGTCTGGTTGAACG 180 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 TCTTGCCGTTGTACACACCGACGGTGGAGCCGACCATCTCCGGCACGATGATCATGTTAC 240 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 GCAGATGCGTCTTCACGCAGGCCGGCTTCTCGTTCGGGGGCGTGTTCTTCTTGGCCAGGC 300 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 GCACTTCTTGATGAGGGCCTGCGGCTTCCTGCGCTGTCCGCGCTTGAAGCGCCGACTCCA 360 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 ACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGC 420 consensus_4854#1 -------------------------------------------------------GAATC 5 *** * consensus_4854#0 GCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGACGTAG 480 consensus_4854#1 CCCN--AGGTTAAAACGAAATTATCTATCGTGCATTACGTTTACATTTCGGTAGCCGTAG 63 * ** * * * * * * * * * * * * * * * ***** consensus_4854#0 CGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCA-GTGGTCCGTACCTGTGGTTCCT 539 consensus_4854#1 CGTCGCCGAAGGGTCTGGTAGTACCCGTGCTGAGAAATGTGGAAGGTATG---AACTACG 120 **** * *** *** * ** ** **** * **** *** * * consensus_4854#0 CTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAA 599 consensus_4854#1 CCGATATCGAGCTGGC-CATCGCTGGACTGGCGG--ATAAG-----GCGAAAAAGGGGAC 172 * ** * * ** ** * * *** ***** * * * ** * consensus_4854#0 ACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATC 659 consensus_4854#1 GTTGGCC-GTAAGGACATGGATGGTGGCACCTTTACAT---CTCGAACGGTGGAGTGTTC 228 * ** ** * ** * * ** * ** *** ** ** ** consensus_4854#0 CTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 719 consensus_4854#1 GGATCGCTGCTCGGAGCCCATCATCAATCCTCCGCAGAGC--GCATTCTTGGCATGCACG 286 * ** * * **** * * ***** *** ** * consensus_4854#0 GCCACGTCGCTATGAACGCTTGGCGGCCACAAG---CCAGTAATCCCTGTGGTAACTTTT 776 consensus_4854#1 GCATCTTCGAGCGAACCGATCAGCTGTNAAAGGGAACAGGTGGTAATTCCGACCATGATG 346 ** * *** * ** * ** * * * * * ** * * * * * consensus_4854#0 CTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGC----CAAGCTTT 832 consensus_4854#1 TACGTANCCTGTACTACGACCATTCGGTTGATTGATGGACGGTGAGGCGTGTCGACCTTC 406 * * * *** * * * * *** ** **** * * *** consensus_4854#0 CGCTGTCCCGAAGTGTACTGAACGTTGGGATCAAGCCAGCTTTTGTCCTTATGCTCAGCG 892 consensus_4854#1 CTCTGCCGCAANGTGAAAGGCCCGATGTA--CGAAGGATCNCTTNNCATTCTGTTGCTGG 464 * *** * * * *** * * ** ** * * * * ** * ** ** * * consensus_4854#0 TGTGGTTTCTG---TCCACACTGAGC-TGACCTTTGGACACCTCCGTTATCGTTTTGGAG 948 consensus_4854#1 CCCGGTCTGTAAAACGAACAGTTAACACAACAATCAAAAACNCCTGGCTGCGTTTCACCG 524 *** * * *** * * * ** * * ** * * ***** * consensus_4854#0 ATGTACCGCCCCAGTCAAACTCCGCACCTGGCACTGTCCATGACGTGGAC-CGAAAGGAC 1007 consensus_4854#1 AAGACCGGATCTCTTTTGACNCG--AACTCACACATTCTGAGACAGGAAAGTGTCAAAAA 582 * * * * * * ** * * ** *** ** *** * * * * * consensus_4854#0 CTGTCCAGGAGTCTTCGAGCCGGGCGGCGCGCGGAACCGGGGGCAAACGTGACATCATAA 1067 consensus_4854#1 CAGCAGCGAAA------------------------------------------------- 593 * * * * consensus_4854#0 ACGATCGACCGCGCAGAAGCAGTGCACCACGAATGCACCGACGTACGCAAGCTTGGTACC 1127 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 TTGCGGCCACGGCTCACGGTCGGACAAGCGGGTAACACGCTACACACGACGATGCTACGA 1187 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 TGCAGTCTCCCCGGCGGCACCACCCAGCGACACAGTTCACTGAAGAAAATCGATCGAAAT 1247 consensus_4854#1 ------------------------------------------------------------ consensus_4854#0 CGAACTACTTCAATATTTCCTACTTCCTCACACAAACTA 1286 consensus_4854#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||