These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 972 fasta sequence [CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTATTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTCTCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGCGTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAGAGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCGGTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCCCCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGC---ATTGGCGATCATTGGATCTATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCGATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGAGGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGG] [+] EMBL BM596454 [CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTATTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTCTCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGCGTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAGAGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCGGTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCCCCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGCATTATTGGCGATCATTGGATCTATT ] [+] EMBL BX602196 [ cAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTATTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTCTCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGCGTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAGAGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCGGTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCCCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCCCCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGC ATTGGCGATCATTGGATCTATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCGATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCA ] [+] EMBL BM655896 [ ccGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGC ATTGGCGATCATTGGATCTATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCGATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGAGGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGG] consensusID : consensus_4866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence [CCGCGGACGCGTGGGGTGAAGTGAAAACGGTGCTCGGTCTCTCGGTGCTCTATCTTCTTTGCCTAAAGTAAAAGAAAAAATTTCCAAGATGCCGTTCAAGAGTATTAAGGCCCGTCAGATCTTCGACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTGTTCCGTGCTGCCGTCCCGTCTGGCGCGTCCACCGGCGTCC] [+] EMBL BM612043 [CCGCGGACGCGTGGGGTGAAGTGAAAACGGTGCTCGGTCTCTCGGTGCTCTATCTTCTTTGCCTAAAGTAAAAGAAAAAATTTCCAAGATGCCGTTCAAGAGTATTAAGGCCCGTCAGATCTTCGACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTGTTCCGTGCTGCCGTCCCGTCTGGCGCGTCCACCGGCGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4866#0 CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTA 60 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTC 120 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGC 180 consensus_4866#1 --------------------------------------------CCGCG-GACGCGTGGG 15 *** ** * *** consensus_4866#0 GTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAG 240 consensus_4866#1 GTGAAGTGAAAACGGT-GCTCGGTCTCTCGGTGCTCTATCTTCTTTGCCTAAAGTAAAAG 74 *** * * *** * ** * * * *** * **** * * *** consensus_4866#0 AGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCG 300 consensus_4866#1 AAAAAATTTCCAAGATGCCGTTCAAGAGTA-----TTAAGGC-CCGTCAGAT---CTTCG 125 * ** * *** * **** * *** * ** **** * * * *** consensus_4866#0 GTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATT 360 consensus_4866#1 ACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTG------T 179 * * * * * * ** * ** ** ** * ** ** * * consensus_4866#0 TCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATC 420 consensus_4866#1 TCCGTGC-TGCCGTC--CCGTCTGGCGCGTCCA--CCGGCGTCC---------------- 218 *** ** ****** * * * * ** ** * ** * consensus_4866#0 ACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCC 480 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 CCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTC 540 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTT 600 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 ACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGCATTGGCGATCATTGGATC 660 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 TATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCG 720 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 ATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGA 780 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGT 840 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAA 900 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCA 960 consensus_4866#1 ------------------------------------------------------------ consensus_4866#0 GGGTGGCGGCGG 972 consensus_4866#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||