These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [CCCGGGTTAAAGCAGCACACTGCATCTTTTGTGTCACCTATCCCCTAAATCAACCTGTTAAAGCCAACCGGGCGCAAGAGATAAAGGAAGGAAAAAAGGCACGCGAAAAAGATTGTGATAAGAGAATTTTAAGTATGTATATTTTGTATTATAAGTGGACCGCATCATCCATCCCCCCGGTGTGCCTGCAGATCCCATTGAAGCGGTGTGCTGNGGCAGAAGCTTTCTGGTTTCGGCGTCTTTTTAAACGTATATTAGTNNTGTACTTGTGATGAACCATTGTATCTATTCGGAAGCAGTAACATTGTATTGCGCGCGCACCACAGTCATTGAAAGAAGAAGCATCGGAGCACAGGACGGTTGNAGGTTGAGATAGCAACGCNGCTGTGAAGGAGCGACTNNGTTGTNGCGATATGTGTTGTAAGGCGTACGNAAGTANAATGTTATCCCAACCCCGTATTACCGTCTATAAGGACCCAACCCTACAGGACAAAACCGAACCAGATGAACAGACGCTCTCCCTAGCGTAAGCCTCGCGGCTCGTCTACCCCGTACAGNTTGTACAANAAAGCGGCTACTTNACCCTATATCGTAGTCGATGTGCAAGGGAAGAAGGCCCTCTTCATAATTGGAACCAAACCCGGCNTCGCAATACCAANTGNCCCGCCCCACGGAACACAGNGGGAAGCCACTTCACGAACCCCCCCGACCACCCGCGCCGCCGGAATTTCCGACGCTNACTNAACGCGGNAAATTGNACAACATACCCCTTGACATACACCGGAATACCGGGCCCCTCGCGCACACTGCGCANACC] [+] EMBL AL693385 [CCCGGGTTAAAGCAGCACACTGCATCTTTTGTGTCACCTATCCCCTAAATCAACCTGTTAAAGCCAACCGGGCGCAAGAGATAAAGGAAGGAAAAAAGGCACGCGAAAAAGATTGTGATAAGAGAATTTTAAGTATGTATATTTTGTATTATAAGTGGACCGCATCATCCATCCCCCCGGTGTGCCTGCAGATCCCATTGAAGCGGTGTGCTGNGGCAGAAGCTTTCTGGTTTCGGCGTCTTTTTAAACGTATATTAGTNNTGTACTTGTGATGAACCATTGTATCTATTCGGAAGCAGTAACATTGTATTGCGCGCGCACCACAGTCATTGAAAGAAGAAGCATCGGAGCACAGGACGGTTGNAGGTTGAGATAGCAACGCNGCTGTGAAGGAGCGACTNNGTTGTNGCGATATGTGTTGTAAGGCGTACGNAAGTANAATGTTATCCCAACCCCGTATTACCGTCTATAAGGACCCAACCCTACAGGACAAAACCGAACCAGATGAACAGACGCTCTCCCTAGCGTAAGCCTCGCGGCTCGTCTACCCCGTACAGNTTGTACAANAAAGCGGCTACTTNACCCTATATCGTAGTCGATGTGCAAGGGAAGAAGGCCCTCTTCATAATTGGAACCAAACCCGGCNTCGCAATACCAANTGNCCCGCCCCACGGAACACAGNGGGAAGCCACTTCACGAACCCCCCCGACCACCCGCGCCGCCGGAATTTCCGACGCTNACTNAACGCGGNAAATTGNACAACATACCCCTTGACATACACCGGAATACCGGGCCCCTCGCGCACACTGCGCANACC] consensusID : consensus_4867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACAGAGCTGAGGCAGCAACTTACTGTTGGCTAGTGCGTGTGTTTGTCTCTGTGTTGTTTTGGTGTGATTAATTAAAGCGAAAAAATGTCCTCATTTGCTGCACTCCGATTCGCTCCCCGGTTGCTCACCGGCAATGCCTCCCATCGGTTGGTGGCGGCGGCCACGCAGCGGAATTCCTACTTTACCTACTCGAACCAAATTTCGCAGCCGCTCGAGCGTGAGCCCAAGTACACCACGGCGGAGGAAGCCGTCAAAGTTATCAAATCAGGGGACATTGTGTTCGCGCAGGGTGCAGCGGCCACCCCGGTCCATCTGCTCGATGCGATGACCAAGCACGGCATGGAGAACAATCTGCGCGACATCACCGTGACGCACATGCACACCGAAGGGCCGGCTTCGTACTGCAAACCCGAGTGCAAGGACGTGTTCCGCTCGAAGTCACTGTTCATGGGCGGCAACGTGCGGGCAGCTGTGGCCGATGGCCGCGGTGATGCGGTCCCGATCTTCCTGCACGAAATTCCGCTGCTGTTCCGGCGCAAGCTCATCCAGCCGGATGTGGCAATCGTGTCGGTGTCGCCACCGGACAACCACGGCTACT] [+] EMBL BM575104 [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACAGAGCTGAGGCAGCAACTTACTGTTGGCTAGTGCGTGTGTTTGTCTCTGTGTTGTTTTGGTGTGATTAATTAAAGCGAAAAAATGTCCTCATTTGCTGCACTCCGATTCGCTCCCCGGTTGCTCACCGGCAATGCCTCCCATCGGTTGGTGGCGGCGGCCACGCAGCGGAATTCCTACTTTACCTACTCGAACCAAATTTCGCAGCCGCTCGAGCGTGAGCCCAAGTACACCACGGCGGAGGAAGCCGTCAAAGTTATCAAATCAGGGGACATTGTGTTCGCGCAGGGTGCAGCGGCCACCCCGGTCCATCTGCTCGATGCGATGACCAAGCACGGCATGGAGAACAATCTGCGCGACATCACCGTGACGCACATGCACACCGAAGGGCCGGCTTCGTACTGCAAACCCGAGTGCAAGGACGTGTTCCGCTCGAAGTCACTGTTCATGGGCGGCAACGTGCGGGCAGCTGTGGCCGATGGCCGCGGTGATGCGGTCCCGATCTTCCTGCACGAAATTCCGCTGCTGTTCCGGCGCAAGCTCATCCAGCCGGATGTGGCAATCGTGTCGGTGTCGCCACCGGACAACCACGGCTACT] consensusID : consensus_4867#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [CCGCCCACGCGTCCGGAGCCCCGAAGTTACCTGGAGCCGCAAGAACAACCCCGAGCCGTGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCAGTGATGAAGCGCATACTTTGGATAAACAACATCCCATCCCAAAACAACAAGACACGGGACGATTGGTGCTTATTCTAGTTTGGTTGGCAGTTAGAACTTCTTATTTGTAAATATGGTCCAATCTGTATGGGTGTGTGTGTGTGTGTGTGTGGTGAAACGGAACCAATTGCGCGGCAAATAAAATCTGCTGATTTTG] [+] EMBL BM595185 [CCGCCCACGCGTCCGGAGCCCCGAAGTTACCTGGAGCCGCAAGAACAACCCCGAGCCGTGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCAGTGATGAAGCGCATACTTTGGATAAACAACATCCCATCCCAAAACAACAAGACACGGGACGATTGGTGCTTATTCTAGTTTGGTTGGCAGTTAGAACTTCTTATTTGTAAATATGGTCCAATCTGTATGGGTGTGTGTGTGTGTGTGTGTGGTGAAACGGAACCAATTGCGCGGCAAATAAAATCTGCTGATTTTG] consensusID : consensus_4867#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CCGTTTATTTATAATTATTAATAAAAATAATTCTTATTTTTTATAGTTTTAGTAATTTATAATGAAATAATCAATTCTTAATTATAGTGTATTAGTATTTTAAAAGAATATTGAAATAATTTGAAAAATTTTTCATTTTTAAGAAAATTTAATTTATGTGTACCTTGTGTATCAGGGTTTATTAAATAATCAAATTATTATAATAATTTCCTCTCGAATTTGTACAAGATTCAATTATATATAAAAGTTATTGCGGAATAACTATCTTCAGATATGCAATTAGAAATGAAATGTTAATCGCTTTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTCCTCCCTTTAATAATTAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATCTTTTAAGGACATATCAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAA] [+] EMBL BM606221 [CCGTTTATTTATAATTATTAATAAAAATAATTCTTATTTTTTATAGTTTTAGTAATTTATAATGAAATAATCAATTCTTAATTATAGTGTATTAGTATTTTAAAAGAATATTGAAATAATTTGAAAAATTTTTCATTTTTAAGAAAATTTAATTTATGTGTACCTTGTGTATCAGGGTTTATTAAATAATCAAATTATTATAATAATTTCCTCTCGAATTTGTACAAGATTCAATTATATATAAAAGTTATTGCGGAATAACTATCTTCAGATATGCAATTAGAAATGAAATGTTAATCGCTTTAAAATATATCTAGTTTTTTAAGAAATGAATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTCCTCCCTTTAATAATTAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATCTTTTAAGGACATATCAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4867#2 ------------------------------------------------------------ consensus_4867#3 ------------------------------------------------------------ consensus_4867#0 CCCGGGTTAAAGCAGCACACTGCATCTTTTGTGTCACCTATCCCCTAAATCAACCTGTTA 60 consensus_4867#1 ------------------------------------------------------------ consensus_4867#2 -----------------CCGCCCACGCGTCCGGAGCCCCGAAGTTACCTGGAGCCGCA-A 42 consensus_4867#3 -----------------------------------CCGTTTATTTATAATTATTAATA-A 24 consensus_4867#0 AAGCCAACCGGGCGCAAGAGATAAAGGAAGGAAAAAAGGCACGCGAAAAAGATTGTGATA 120 consensus_4867#1 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGA-G 29 * consensus_4867#2 GAACAACCCCGAGCCGTGGGAGGAA-TACCGGACCA-AGCAGCATAAGTTCTACTCTCCG 100 consensus_4867#3 AAATAATTCTTATTTTTTATAGTTT-TAGTAATTTATAATGAAATAA--TCAATTCTT-A 80 consensus_4867#0 AGAGAATTTTAAGTATGTATATTTTGTATTATAAGTGGACCGCATCA-TCCATCCCCCCG 179 consensus_4867#1 AAAATCTACAGAGCTGAGGCAGCAACTTACTGTTGGCTAGTGCGTGTGTTTGTCTCTGTG 89 * * * * * * consensus_4867#2 GTCAGGGATTAC-TCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAG 159 consensus_4867#3 ATTATAGTGTAT-TAGTATTTTAAAAG---AATATTGAAATAATTTGAAAAATTTTTCAT 136 consensus_4867#0 GTGTGCCTGCAGATCCCATTGAAGCGGTGTGCTGNGGCAGAAGCTTTCTGGTTTCGGCGT 239 consensus_4867#1 TTGTTTTGGTGTGATTAATTAAAGCGAAAAAATGTCCTCATTTGCTGCACTCCGATTCG- 148 * * * * consensus_4867#2 CATATTGTCAGCC-ACTGAAGAGGCGCCA----CCGGCTATAGA----ATGGGGACGGGG 210 consensus_4867#3 TTTTAAGAAAATTTAATTTATGTGTACCT----TGTGTATCAGGGTTTATTAAATAATCA 192 consensus_4867#0 CTTTTTAAACGTATATTAGTNNTGTACTTGTGATGAACCATTGTATCTATTCGGAAGCAG 299 consensus_4867#1 CTCCCCGGTTGCTCACCGGCAATGCCTCC-CATCGGTTGGTGGCGGCGGCCACGCAGCGG 207 * * * consensus_4867#2 AATCACCACTCTA---ATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACA 267 consensus_4867#3 AATTATTATAATA---ATTTCCTCTCGAATTTGTACAAGATTCAATTATATATAAAAGTT 249 consensus_4867#0 TAACATTGTATTGC--GCGCGCACCACAGTCATTGAAAGAAGAAGCATCGGAGCACAG-G 356 consensus_4867#1 AATTCCTACTTTACCTACTCGAACCAAATTTCGCAGCCGCTCGAGCGTGAGCCCAAGTAC 267 * * * * * consensus_4867#2 CCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAG 327 consensus_4867#3 ATTGCGGAATAACTATCTTCAGATATGCAATTAGAAATGAAATGTTAATCGCTTTAAAAT 309 consensus_4867#0 ACGGTTGNAGGTTGAGATAGCAACGCNGCTGTGAAGGAGCGAC-TNNGTTGTNGCGATAT 415 consensus_4867#1 ACCACGGCGGAGGAAGCCGTCAAAGTTATCAAATCAGGGGACATTGTGTTCGCGCAGGGT 327 * * * * consensus_4867#2 CCGCTGGAAAAG---ACTCAAAGGATAAACGGAAT--TCGATCGACTAATTGGAACACAT 382 consensus_4867#3 ATATC--TAGTT---TTTTAAGAAATGAATTTAAT--TTAGCTTATTTATTTTATTAAGT 362 consensus_4867#0 GTGTTGTAAGGC---GTACGNAAGTANAATGTTAT--CCCAACCCCGTATTACCGTCTAT 470 consensus_4867#1 GCAGCGGCCACCCCGGTCCATCTGCTCGATGCGATGACCAAGCACGGCATGGAGAACAAT 387 * ** ** * consensus_4867#2 TTAGCACGCAGTGATGAAGCGCATACTTTGGATAAAC-AACATCCCA-TCCCA-AAACAA 439 consensus_4867#3 TAATTTCCTCCCTTTA------ATAATTAAATAAAGT-AATATTTTA-AGGGATGAGCTT 414 consensus_4867#0 -AAGGACCCAACCCTACAGGACAAAACCGAACCAGATGAACAGACGC-TCTCCCTAGCGT 528 consensus_4867#1 CTGCGCGACATCACCGTGACGCACATGCACACCGAAGGGCCGGCTTCGTACTGCAAACCC 447 * * * * consensus_4867#2 CAAGACACGGGACGATTGGTGCTTATTCTAGTTTGGTTGGC-AGTTAG-AACTTCTTATT 497 consensus_4867#3 TAAAATA----AAATTTTATATTTTTTATAATCTTTTAAGG-ACATATCAGCTTAAAAAT 469 consensus_4867#0 AAGCCTC----GCGGCTCGTCTACCCCGTACAGNTTGTACA-ANAAAGCGGCTACTTNAC 583 consensus_4867#1 GAGTGCA----AGGACGTGTTCCGCTCGAAGTCACTGTTCATGGGCGGCAACGTGCGGGC 503 * * * * consensus_4867#2 TGTAAATATGGTCCAATCTGT-ATGGGTGTGTGTGTGTGTGTGTGTGGTGAAACGGAACC 556 consensus_4867#3 AGCTATTATTAATAAATTTGTTATAA---------------------------------- 495 consensus_4867#0 CCTATATCGTAGTCGATGTGC-AAGGGAAGAAGGCCCTCTTCATAATTGGAACCAAACCC 642 consensus_4867#1 AGCTGTGGCCGATGGCCGCGGTGATGCGGTCCCGATCTTCCTGCACGAAATTCCGCTGCT 563 * consensus_4867#2 AATTGCGCGGCAAATAAAATCTGCTGATTTTG---------------------------- 588 consensus_4867#3 ------------------------------------------------------------ consensus_4867#0 GGCNTCGCAATACCAANTGNCCCGCCCCACGGAACACAGNGGGAAGCCACTTCACGAACC 702 consensus_4867#1 GTTCCGGCGCAAGCTCATCCAGCCGGATGTGGCAATCGTGTCGGTGTCGCCAC-CGGACA 622 consensus_4867#2 ------------------------------------------------------------ consensus_4867#3 ------------------------------------------------------------ consensus_4867#0 CCCCCGACCACCCGCGCCGCCGGAATTTCCGACGCTNACTNAACGCGGNAAATTGNACAA 762 consensus_4867#1 ACCACGGCTACT------------------------------------------------ 634 consensus_4867#2 ------------------------------------------------------- consensus_4867#3 ------------------------------------------------------- consensus_4867#0 CATACCCCTTGACATACACCGGAATACCGGGCCCCTCGCGCACACTGCGCANACC 817 consensus_4867#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||