These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence [TGATTTATTTTCACGAAACATTTTATATGTTGTTTACAACACGTCGCCATCCTGATCCCCACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCCACAGTCAATGTGATGCCAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCGGTTCTTGCGTCGATGTTCTTCGAAAAAGTCCCCTTCCGGGACAGGCATGTCGTTCATGGTGTACTCCGCATCCTTACTACAGGCAAACGAATCTGCTGAAGCAGCAGGAAGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGTGTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCGGTACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACTTCTACGGCGAGCGCACCACGATCGATGTGAACGATCTGTACGAAATTCACAATCAAACGCAGGTGTACCTGGTCGGTACGGAATCGCGCCACAAGGTGGGACATTTGCTAACCGCAAAGGAAGTCACGCTGGGCCCGTGGGACTCCATCTTGCTTGGGCCGGTGTCGAGTGGTGGACGGGCTGTGCTAGCGTTCGGATTGCTCGTCCTTGCCGTGGTGAAATCGTTCCTTTTCTAGGCGCTGATGTAGATGTCGGCTTTGTCGTCGCTTCTAACGAGCATAATAAATATCC] [+] EMBL BX610369 [TGATTTATTTTCACGAAACATTTTATATGTTGTTTACAACACGTCGCCATCCTGATCCCCACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCCACAGTCAATGTGATGCCAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCGGTTCTTGCGTCGATGTTCTTCGAAAAAGTCCCCTTCCGGGACAGGCATGTCGTTCATGGTGTACTCCGCATCCTTACTACAGGCAAACGAATCTGCTGAAGCAGCAGGAAGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGTGTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCGGTACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACTTCTACGGCGAGCGCACCACGATCGATGTGAACGATCTGTACGAAATTCACAATCAAACGCAGGTGTACCTGGTCGGTACGGAATCGCGCCACAAGGTGGGACATTTGCTAACCGCAAAGGAAGTCACGCTGGGCCCGTGGGACTCCATCTTGCTTGGG ] [+] EMBL BX609130 [ TCCTGATCCCCACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCCACAGTCAATGTGATGCCAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCGGTTCTTGCGTCGATGTTCTTCGAAGAAGTCCCCTTCCGGGACAGGCATGTCGTTCATGGTGTACTCCGCATCCTTACTACAGGCAAACGAATCTGCTGAAGCAGCAGGAAGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGTGTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCGGTACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACTTCTACGGCGAGCGCACCACGATCGATGTGAACGATCTGTACGAAATTCACAATCAAACGCAGGTGTACCTGGTCGGTACGGAATCGCGCCACAAGGTGGGACATTTGCTAACCGCAAAGGAAGTCACGCTGGGCCCGTGGGACTCCATCGTGCTTGGGCCGGTGTCGAGTGGTGGACGGGCTGTGCTAGCGTTCGGATTGCTCGTCCTTGCCGTGGTGAAATCGTTCCTTTTCTAGGCGCTGATGTAGATGTCGGCTTTGTCGTCGCTTCTAACGAGCATAATAAATATCC] consensusID : consensus_4869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [AGCTGGGCTCTGTGTATTTATTTATTATTGACAAAACGACCACGACTAAGCCCCTTCCGGTCCCCCGCCAAGGGGTTGGGGGTTTTGGGGGCGTCAGAGGCTACCGCACACGTACCGCACACACACACGCCGCTCCTCATCTCACACATCGACGACGACCGGGGCATTCCGCTTTTAGTGCATATCGTACACCGATTTCAGTGCCAGCTCGGGCTGATCGTAGCCCAGCTCTTCCGGCGTGTCGATGCCGAGCTCGGTCAGCGTCGGGCGAATTTCCTGCAGCAGAAACGGGTAGATTTCGTTCGTCTTGTCACCGCACTTGTCCTTCACGCCCTCCAGGAAGCGGACGGCCAGCGCGTAGTCGTTCAGGCGGCGGCAAGCCTTCAGCGCGGACACGATGATTTTCGGCTCCGGCACCAGATCCATGCCGAGCAGATCGTTCATCGCCTCGCGGGCCTCCCAGCCATCGATCTCCGGCCGGTTGAAGTACGCCTCGTAGCGTTTGTCGAACTCCTCGTCCGTCTCATTACTGTGCGAGTCGCGCACCACCATCGCACCCACCATCGGTTGGCTGCTCTTCAGCCCAGCGGCGCTGCGAAGTCCGCCCAGCACACGGCCAGCCGCAAAACGGAGCATCTTCGATATTTATTCACCGGAACGACGGAGGAAAAACTTGCACCCGATAGTGTGAGTCTTAAGTAATCGAAAGCCCAGTAGGCCAACAG] [+] EMBL CNS08YE3 [AGCTGGGCTCTGTGTATTTATTTATTATTGACAAAACGACCACGACTAAGCCCCTTCCGGTCCCCCGCCAAGGGGTTGGGGGTTTTGGGGGCGTCAGAGGCTACCGCACACGTACCGCACACACACACGCCGCTCCTCATCTCACACATCGACGACGACCGGGGCATTCCGCTTTTAGTGCATATCGTACACCGATTTCAGTGCCAGCTCGGGCTGATCGTAGCCCAGCTCTTCCGGCGTGTCGATGCCGAGCTCGGTCAGCGTCGGGCGAATTTCCTGCAGCAGAAACGGGTAGATTTCGTTCGTCTTGTCACCGCACTTGTCCTTCACGCCCTCCAGGAAGCGGACGGCCAGCGCGTAGTCGTTCAGGCGGCGGCAAGCCTTCAGCGCGGACACGATGATTTTCGGCTCCGGCACCAGATCCATGCCGAGCAGATCGTTCATCGCCTCGCGGGCCTCCCAGCCATCGATCTCCGGCCGGTTGAAGTACGCCTCGTAGCGTTTGTCGAACTCCTCGTCCGTCTCATTACTGTGCGAGTCGCGCACCACCATCGCACCCACCATCGGTTGGCTGCTCTTCAGCCCAGCGGCGCTGCGAAGTCCGCCCAGCACACGGCCAGCCGCAAAACGGAGCATCTTCGATATTTATTCACCGGAACGACGGAGGAAAAACTTGCACCCGATAGTGTGAGTCTTAAGTAATCGAAAGCCCAGTAGGCCAACAG] consensusID : consensus_4869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CAGATCCCCTGAGGTTTTTATGGTTTGAACTGCGTATTGTTTTAAGTGAGGGCGCCTTGTGTTGCTTGTGTGATGTGTGTGTGATATGTAATGATTCGCGAGACAGCATAAAGTGTTTTGTTTGTAAGAAAGGTGTTGTGTTGAAGTGAAAATTAATGCAGNTCGTGTTCCGGTGTGGGTGAAACAATTAATAAAAATCAATGATCTATTTACCAATGGGAAAATGTTTTGCNCGAGATCATTCGTTGTTATACCCGCAACGTAGGAACATAACTGACAAGCGGTAGGCAAAAAGCGTGCGTTTNGCGAAGTGCGAACATACCCTAAAACCAGAGGTCACTATATGTNTNATACCCGTTTCCAAATCANAGTATTTGAGACGAGNNTAAACCACTGNCGCTTGNCGAACAGGCCATGAGCACANATATATTGGAGATGAGCGGGGCTATACGCGTTTTCCCACNTTATGCGTAACCACTAAGCANATCATATTGTATGTTGCAGCAACTATTACAGCCGACTAATGTTCTAATGCAGACATATTAACTNNACTTTAACTCAGTTCATCAACAGANCCGGGTCTTA] [+] EMBL AL930061 [CAGATCCCCTGAGGTTTTTATGGTTTGAACTGCGTATTGTTTTAAGTGAGGGCGCCTTGTGTTGCTTGTGTGATGTGTGTGTGATATGTAATGATTCGCGAGACAGCATAAAGTGTTTTGTTTGTAAGAAAGGTGTTGTGTTGAAGTGAAAATTAATGCAGNTCGTGTTCCGGTGTGGGTGAAACAATTAATAAAAATCAATGATCTATTTACCAATGGGAAAATGTTTTGCNCGAGATCATTCGTTGTTATACCCGCAACGTAGGAACATAACTGACAAGCGGTAGGCAAAAAGCGTGCGTTTNGCGAAGTGCGAACATACCCTAAAACCAGAGGTCACTATATGTNTNATACCCGTTTCCAAATCANAGTATTTGAGACGAGNNTAAACCACTGNCGCTTGNCGAACAGGCCATGAGCACANATATATTGGAGATGAGCGGGGCTATACGCGTTTTCCCACNTTATGCGTAACCACTAAGCANATCATATTGTATGTTGCAGCAACTATTACAGCCGACTAATGTTCTAATGCAGACATATTAACTNNACTTTAACTCAGTTCATCAACAGANCCGGGTCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4869#0 TGATTTATTTTCACGAAACATTTTATATGTTGTTTACAACACGTCGCCATCCTGATCCCC 60 consensus_4869#2 -------------------------------------------CAGATCCCCTGAGGTTT 17 consensus_4869#1 -------------------------------------------------AGCTGGGCTCT 11 *** consensus_4869#0 ACTTAGTCCAGGCTTTTCGGCGGGCTGTAATTAAGGTAGATCAATCCGCTCTCCTTGGCC 120 consensus_4869#2 TTATGGTTTGAACT-----GCGTATTGTT-TTAAGTGAGGGCGCCTTGTGTTGCTTGTGT 71 consensus_4869#1 GTGTATTTATTTATTATTGACAAAACGAC--CACGACTAAGCCCCTTCCGGTCCCCCGCC 69 * * * * * * * * * * consensus_4869#0 ACAGTCAATGTGATGC-CAAAGATAACAATACCCGCAGCGAGCACGGTATTGTACACCCG 179 consensus_4869#2 GATGTGTGTGTGATATGTAATGATTCGCGAGACAGCATAAAGTGTTTTGTTTGTAAGAAA 131 consensus_4869#1 AAGGGGTTGGGGGTTT-TGGGGGCGTCAGAGGCTACCGCACACGTACCGCACACACACAC 128 * * * * * * * consensus_4869#0 GTTCTTGCGTCGATGTTC---TTCGAAAAAGTCC---CCTTCCGGGACAGGCATGTCGTT 233 consensus_4869#2 GGTGTTGTGTTGAAGTGAAAATTAATGCAGNTCG---TGTTCCGGTGTGGGTGAAACAAT 188 consensus_4869#1 GCCGCTCC-TCATCTCACACATCGACGACGACCGGGGCATTCCGCTTTTAGTGCATATCG 187 * * * * * ***** * consensus_4869#0 CATGGTGTACTCCGCATCC--TTA--CTACAGGCAAACG-AATCTGCTGAAGCAGCAGGA 288 consensus_4869#2 TAATAAAAATCAATGATCTATTTA--CCAATGGGAAAAT-GTTTTGCNCGAG-ATCATTC 244 consensus_4869#1 TACACCGATTTCAGTGCCAGCTCGGGCTGATCGTAGCCCAGCTCTTCCGGCGTGTCGAT- 246 * * * * * * * * * * * consensus_4869#0 AGCGGAGTACAGCCACTACAAGTTCTATCTGGATGCGGTAGCGATGCGTAAGGATCGGGT 348 consensus_4869#2 GTTGTTATACCCGCAACGTAGG----AACATAACTGACAAGCGGTAGGCAAAAAGCGTGC 300 consensus_4869#1 -GCCGAGCTCGGTCAGCGTCGGG-CGAATTTCCTGCAGCAGAAACGGGTAGATTTCGTTC 304 * ** * * ** * * ** consensus_4869#0 GTTTACGCACGGTGAGTTCAAGTCGCACGCGTTCGGTGATGGTGTGTTTGCGTTCGTGCG 408 consensus_4869#2 GTTTN-GCGAAGTG---------CGAACATACCCTAAAACCAGAGGTCACTATATGTNTN 350 consensus_4869#1 GTCTTGTCACCGCACTTGTCCTTCACGCCCTCCAGGAAGCGGACGGCCAGCGCGTAGTCG 364 ** * * * * * * consensus_4869#0 GT-ACTTGAGAGAGAACGAGGATCGCATGGACGATCCGTACCGGGTGGTGCTGATCAACT 467 consensus_4869#2 AT-ACCCGTTTCCAAATCANAGTATTTGAGACGAGNNTAAACCACTGNCGCTTGNCGAAC 409 consensus_4869#1 TTCAGGCGGCGGCAAGCCTTCAGCGCGGACACGATGATTTTCGGCTCCGGC--ACCAGAT 422 * * * * **** * * ** * consensus_4869#0 TCTACGGCGAGCGCAC-CACGATCGAT--GTGAACGAT-CTGTACGAAATTCACAATCAA 523 consensus_4869#2 AG-GCCATGAGCACANATATATTGGAG--ATGAGCGGGGCTATACGCGTTTTCCCACNTT 466 consensus_4869#1 CC-ATGCCGAGCAGATCGTTCATCGCCTCGCGGGCCTCCCAGCCATCGATCTCCGGCCGG 481 **** * * * * * * * * consensus_4869#0 ACGCAGGTGTACCTGGTCG-GTACGG-AATCGCGCCACAAGGTGGGACATT-TGCTAACC 580 consensus_4869#2 ATGC----GTAACCACTAA-GCAN----ATCATATTGTATGTTGCAGCAAC-TATTACAG 516 consensus_4869#1 TTGAAG-TACGCCTCGTAGCGTTTGTCGAACTCCTCGTCCGTCTCATTACTGTGCGAGTC 540 * * * * * * * * * * consensus_4869#0 GCA-AAGGAAGTCACGCTGGGCCCGTGG-GACTCCATCTTGCTTGGGCCGGTGTCGAGTG 638 consensus_4869#2 CCG-ACTAATGTTCTAATGCAGACATATTAACTNNACTTTAACTCAGTT--CATCAACAG 573 consensus_4869#1 GCGCACCACCATCGCACCCACCATCGGTTGGCTGCTCTTCAGCCCAGCGG-CGCTGCGAA 599 * * * ** * * consensus_4869#0 GTGGACGGGCTGTGCTAGCGTTCGGATTGCTCGTCCTTGCCGTGGTGAAATCGTTCCTTT 698 consensus_4869#2 AN--CCGGGTCTTA---------------------------------------------- 585 consensus_4869#1 GTCCGCCCAGCACACGGCCAGCCGCAAAACGGAGCATCTTCGATATTTATTCACCGGAAC 659 * consensus_4869#0 TCTAGGCGCTGATGTAGATGTCGGCTTTGTCGTCGCTTCTAACGAGCATAATAAATATCC 758 consensus_4869#2 ------------------------------------------------------------ consensus_4869#1 GACGGAGGAAAAACTTGCACCCGATAGTGTGAGTCTTAAGTAATCGAAAGCCCAGTAGGC 719 consensus_4869#0 ------ consensus_4869#2 ------ consensus_4869#1 CAACAG 725 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||