These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence [CGTTAACAGTGCGGACGTACATTNGACATTGGTCGACACTACTTTTCTATTCCCAGTTGTTCGAATTAGCAACCAGCACCAGCACCACTTTGCAAAGTGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAATGCCATACACAATGAAGCGAGCGCAAAATGTCGTGACGATTACGACAAGTACGACTTCGACGATGGCAGAANGTCATCCACTCCGAGGCACAGTGGCAANCATGGCACAGATCGGAGGGGGAATGCGCATCTAGACCAANACCATTAGGATCCGGGCGGGCCATANCGACGCCAGATATGTTGACACCCGCTGAGACANTACGGCATCAGAAGCAAGCAAAGTCTGCGCCGACAGTAATCTCACCGGGAGCTCGGACGTGTGACTTCCCGTCGCGAATTGTGGCTGTGGGCAGTGTNTTGTCGAATGATGTGGTTCCTAAATCCNGGGCCAAGTGNNGTNCCAATGGTAGANCCGAGAACAANCCGGCACGNTTCTCCTTAAAAAGGGGCGGATACNGGAGTGCTTGTGATGAACCCCCCTNGGGCCANATGTAATAGGAGCNAACCACTGAAGCCAGAAACTTTTCAATACCACGCTTNGGGCACTGANGCCCTTACNNCNCGTGTGAATAANGAGATTCGCATTCCACACCACTATTNCATNTACCAGTCCNCANGACCNTTTGCGCATGCGCGATAACCNAAAGNGTAGCNGAGGCAANANAGNAAAGNAGGAGNCCCGNGAAGACGGGNACANTAACACCAGNAAGACACAGCCAAGGAAAATAGACAACCCCCCAGGATGGGTAAGACNACCCAAAAAGGTCAAACAGNATCNNAAAAAGAGCANAACACATAGCANCGCACAACNGCAAACNAGGACACGCCCACAACCGGAACATGCGACAAAAACATGGCANAGCAGCAAGCACTAACAANCGGCGCACAGAACNCAGACAGGAAACGGAGGAAAAAAAACAAANAAGAAAAACCACGCAGANACCGNAGGNTGGAGGAATAC] [+] EMBL AL696501 [CGTTAACAGTGCGGACGTACATTNGACATTGGTCGACACTACTTTTCTATTCCCAGTTGTTCGAATTAGCAACCAGCACCAGCACCACTTTGCAAAGTGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAATGCCATACACAATGAAGCGAGCGCAAAATGTCGTGACGATTACGACAAGTACGACTTCGACGATGGCAGAANGTCATCCACTCCGAGGCACAGTGGCAANCATGGCACAGATCGGAGGGGGAATGCGCATCTAGACCAANACCATTAGGATCCGGGCGGGCCATANCGACGCCAGATATGTTGACACCCGCTGAGACANTACGGCATCAGAAGCAAGCAAAGTCTGCGCCGACAGTAATCTCACCGGGAGCTCGGACGTGTGACTTCCCGTCGCGAATTGTGGCTGTGGGCAGTGTNTTGTCGAATGATGTGGTTCCTAAATCCNGGGCCAAGTGNNGTNCCAATGGTAGANCCGAGAACAANCCGGCACGNTTCTCCTTAAAAAGGGGCGGATACNGGAGTGCTTGTGATGAACCCCCCTNGGGCCANATGTAATAGGAGCNAACCACTGAAGCCAGAAACTTTTCAATACCACGCTTNGGGCACTGANGCCCTTACNNCNCGTGTGAATAANGAGATTCGCATTCCACACCACTATTNCATNTACCAGTCCNCANGACCNTTTGCGCATGCGCGATAACCNAAAGNGTAGCNGAGGCAANANAGNAAAGNAGGAGNCCCGNGAAGACGGGNACANTAACACCAGNAAGACACAGCCAAGGAAAATAGACAACCCCCCAGGATGGGTAAGACNACCCAAAAAGGTCAAACAGNATCNNAAAAAGAGCANAACACATAGCANCGCACAACNGCAAACNAGGACACGCCCACAACCGGAACATGCGACAAAAACATGGCANAGCAGCAAGCACTAACAANCGGCGCACAGAACNCAGACAGGAAACGGAGGAAAAAAAACAAANAAGAAAAACCACGCAGANACCGNAGGNTGGAGGAATAC] consensusID : consensus_4872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence [GCAAGAATCGCGCACGAGGTGTGGCAGTGTTGTGTTCCCGACGATTTTGAGTGTGAGTGAAGTTTTCTCCTCATTGTACTGTTTTTTTTTTATGATTCGTTCTGCTCAGCAGAAGTGTTTAATCAGTTTATAGCAAGGGAAACAACAAAAACATTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTGGATACCGGCTGTTGGCGGACTCGTTCCACGCGTTTGCAGTTCTCTATTTGTTGTTCAACATTTGGCGCACCAAGTCCTGCTTTGGCGTATCGGGGAAAACACAAATCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTCCAGCCACCTACAGTGTCTATAATGTGATGATGAAGACGCTTTTCATCAGCGTAACGCTTATAACCGTGCTGGTCATGCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATGATACCTTCTACAATGAGTTTCTCATATTGCCATGCTTTGTGATCGCTCTGTTTATCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCGAAGCAGTCGCGTATACTGCCGGCAAATGGATTTAATCTGCAAAAACGTTTCACGGTGG-AGCCAT-GGTTCAAGTGTTATCTGTTGCTGCTCGGCTCGTACCGCGCGCTCTACGTATTGCATTGGGTCGATCGGGTACGGGCAGTACGGGCTCTTAACGGAACCCAATTAAGGCATTTATANTTCCGGGGTTGGGTATTCCAAACCAGGTACTCNGTTGTTGGTACCTGGCCTTTAGCGGGGNGCGAAATTGGCAGAACCCCTTTANAACACTTCGAGGAAACGCCATTTGTTACCGGGCCCAGTACACGATTTGGGTAA] [+] EMBL BX467440 [GCAAGAATCGCGCACGAGGTGTGGCAGTGTTGTGTTCCCGACGATTTTGAGTGTGAGTGAAGTTTTCTCCTCATTGTACTGTTTTTTTTTTATGATTCGTTCTGCTCAGCAGAAGTGTTTAATCAGTTTATAGCAAGGGAAACAACAAAAACATTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTGGATACCGGCTGTTGGCGGACTCGTTCCACGCGTTTGCAGTTCTCTATTTGTTGTTCAACATTTGGCGCACCAAGTCCTGCTTTGGCGTATCGGGGAAAACACAAATCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTCCAGCCACCTACAGTGTCTATAATGTGATGATGAAGACGCTTTTCATCAGCGTAACGCTTATAACCGTGCTGGTCATGCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATGATACCTTCTACAATGAGTTTCTCATATTGCCATGCTTTGTGATCGCTCTGTTTATCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCGAAGCAGTCGCGTATACTGCCGGCAAATGGATTTAATCTGCAAAAACGTTTCACGGTGG AGCCAT GGTTCAAGTGTTATCTGTTGCTGCTCGGCTCGTACCGCGCGCTCTACGTATTGCATTGGGTCGATCGGGTACGGGCAGTACGGGCTCTTAACGGAACCCAATTAAGGCATTTATANTTCCGGGGTTGGGTATTCCAAACCAGGTACTCNGTTGTTGGTACCTGGCCTTTAGCGGGGNGCGAAATTGGCAGAACCCCTTTANAACACTTCGAGGAAACGCCATTTGTTACCGGGCCCAGTACACGATTTGGGTAA] [+] EMBL BM575021 [ ccgTGTGTT CCGACGATTTTGAGTGTGAGTGAAGTTTTCTCCTCATTGTACTG TTTTTTCTATGTTTCGTTCGGTTCAGCAGAAGTGTTTAATCAGTTTATAGCAAGGGAAACAACAAAAACATTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTGGATACCGGCTGTTGGCGGACTCGTTCCACGCGTTTGCAGTTCTCTATTTGCTGTTCAACATTTGGCGCACCAAATCCTGCTTTGGCGTATCGGGGAAAACACAAATCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTCCAGCCACCTACAGTGTCTATAATGTGATGATGAAGACGCTTTTCATCAGCGTAACGCTAATAACCGTGCTGGTCATGCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATGATACCTTCTACAATGAGTTTCTCATATTGCCATGCTTTGTGATCGCTCTGTTTGTCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCGAAGCAGTCGC TATACTGCC GCAAATGGATTTAATCTGC AAAACGTTTCAC GTGGCAGCCATGGGTTCAAGTGGTATCTGTTGCTGCTCGGCTC ] consensusID : consensus_4872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGTTTTCGGAGTACAAAGGACAAAGGATTCGGAGAATTTAAACATTCGCAATAAAATGACTGGAAGAATATTTTTCTTACGATATCCCATGCTGTATGATTATTTTGTGCTCGAACTAGAAAAGGCTAGTAAAATTATAATTCAGGGTAGTAGAAGCAAAAAGCTACATCCCCTATTACTGCTTTTGAGCCGGCTTTATCCATCGGCCCTGGAGGGTAGTGAGTCAAACCTGAAACTTTCGAGATTCGTTCCTCTAGTATCTATTTGCTCCGGTTGTGCAGAACTACAAACTCGTTACTTAGCGGCAAAGATAATATCTATCATCGTTTCTCCGGATCTTATGTTTGATCGCATTTGTTTATTATTGGAAAGTTTAAATCGTTCCAATAATCGCAATGTGAATCCTAACTCGTTGCACGGAGCATTGTTGCAGATTTTATGCCTTATAAAAACGAAAAATCCCGGCTTAGTGGCTGCAGCAACATCGAGCGGACAGCTGAATAATTGGATTGAGCTGTACACAGCTATTTCTAATTATCTGTTCGAGGTGAAACCCAATTTTATTATTTACAGCACCATATTGGATATATTGCTGGAAATTTTGGCACGGTGCCAACATATAATCATCGCAGAAGATGACCAGTTTATAGACGATCTGAGTAACATT] [+] EMBL BM655097 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGTTTTCGGAGTACAAAGGACAAAGGATTCGGAGAATTTAAACATTCGCAATAAAATGACTGGAAGAATATTTTTCTTACGATATCCCATGCTGTATGATTATTTTGTGCTCGAACTAGAAAAGGCTAGTAAAATTATAATTCAGGGTAGTAGAAGCAAAAAGCTACATCCCCTATTACTGCTTTTGAGCCGGCTTTATCCATCGGCCCTGGAGGGTAGTGAGTCAAACCTGAAACTTTCGAGATTCGTTCCTCTAGTATCTATTTGCTCCGGTTGTGCAGAACTACAAACTCGTTACTTAGCGGCAAAGATAATATCTATCATCGTTTCTCCGGATCTTATGTTTGATCGCATTTGTTTATTATTGGAAAGTTTAAATCGTTCCAATAATCGCAATGTGAATCCTAACTCGTTGCACGGAGCATTGTTGCAGATTTTATGCCTTATAAAAACGAAAAATCCCGGCTTAGTGGCTGCAGCAACATCGAGCGGACAGCTGAATAATTGGATTGAGCTGTACACAGCTATTTCTAATTATCTGTTCGAGGTGAAACCCAATTTTATTATTTACAGCACCATATTGGATATATTGCTGGAAATTTTGGCACGGTGCCAACATATAATCATCGCAGAAGATGACCAGTTTATAGACGATCTGAGTAACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4872#1 --------------GCAAGAATCGCGCACGAGGTGTGGC-AGTGTTGTGTTCCCGACGAT 45 consensus_4872#0 CGTTAACAGTGCGGACGTACATTNGACATTGGTCGACACTACTTTTCTATTCCCAGTTGT 60 consensus_4872#2 ------------------------------------------------------------ consensus_4872#1 TTTGAGT-GTGAGTGAAGTTTTCTCCTCATTGTACTGTTTTTTTTTTAT--------GAT 96 consensus_4872#0 TCGAATTAGCAACCAGCACCAGCACCACTTTGCAAAGTGAGTTAAACCCAGGAAACGGAA 120 consensus_4872#2 ------------------------------------------------------------ consensus_4872#1 TCGTTCTGCTCAGCAGAA----GTGTTTAAT----------CAGTTTATAGCAAGGGAAA 142 consensus_4872#0 GCGCTACAAACTACAAAATGCCATACACAATGAAGCGAGCGCAAAATGTCGTGACGATTA 180 consensus_4872#2 ------------------------------------------------CCGCCCACGCGT 12 * consensus_4872#1 CAACAAAAACA--TTTGAGTATTGGAGACTAATCTACAAAATAAATCAAAATGCTTACTG 200 consensus_4872#0 CGACAAGTACGACTTCGACGATGGCAGAANGTCATCCACTCCGAGGCACAGTGGCAANCA 240 consensus_4872#2 CCGCCCACGCGTCCGCCCACGCGTCCGGTGTTTTCGGAGTACAAAGGACAAAGGATTCGG 72 * * * * * * * * * consensus_4872#1 -GATACCGGCTGTTGGCGGA--------CTCGTTCCACGCGTTTGCAGTTCTCTATTTGT 251 consensus_4872#0 TGGCACAGATCGGAGGGGGAATGCGCATCTAGACCAANACCATTA-GGATCCGGGCGGGC 299 consensus_4872#2 AGAATTTAAACATTCGCAA----------TAAAATGACTGGAAGAATATTTTTCTTACGA 122 * * * * * * consensus_4872#1 TGT-TCAACATTTGGCGCACCAAGTCCTGCTTTGGCGTATCGG-----GGAAAACACAAA 305 consensus_4872#0 CATANCGACGCCAGATATGTTGACACCCGCTGAGACANTACGGCATCAGAAGCAAGCAAA 359 consensus_4872#2 TAT-CCCATGCTGTATG-ATTATTTTGTGCTCGAACTAGAAAAGGCTAGTAAAATTATAA 180 * * * *** * * * * ** consensus_4872#1 TCCTGTACATTACGGTATTTGCGACGCGCTATGCCGACCTGGTCACCTTTC-C-AGCCAC 363 consensus_4872#0 GTCTGCGC-CGACAGTAATCTCACCGGG--AGCTCGGACGTGTGACTTCCCGT-CGCGAA 415 consensus_4872#2 TTCAGGGT-----AGTAGAAGCAAAAAGCTACATC--CCCTATTACTGCTTTTGAGCCGG 233 * * *** * * * * * * ** ** consensus_4872#1 CTACAG-TGTCTATAATGTGATGATGAA-GACGCTTTTCATCAGCGTAACGCTTATAACC 421 consensus_4872#0 TTGTGGCTGTGGGCAGTGTNTTGTCGAATGATGTGGTTCCTAAATCCNGGGCCAAGTGNN 475 consensus_4872#2 CTTTATCCATCGGCCCTGGAGGGT--AGTGAGTCAAACCTGAAACTT----TCGAGATTC 287 * * ** * * ** * * * consensus_4872#1 GTGCTGGTCAT-GCACAGCGTCTATCGCAAAACGTATGACCGCGAAAATG-----ATACC 475 consensus_4872#0 GTNCCAATGGTAGANCCGAGAACAANCCGGCACGNTTCTCCTTAAAAAGGGGCGGATACN 535 consensus_4872#2 GTTCCTCTAGT---ATCTATTTGCTCCGGTTGTGCAGAACTACAAACTCG-----TTACT 339 ** * * * * * ** * *** consensus_4872#1 T-----TCTACAATGAGTTTCTCATATTGCCATGCTTTGTG-------ATCGCTCTGTTT 523 consensus_4872#0 GGAGTGCTTGTGATGAACCCCCC-TNGGGCCANATGTAATAGGAGCNAACCACTGAAGCC 594 consensus_4872#2 TA----GCGGCAAAGATAATATC-TATCATCGTTTCTCCGG-------ATC-TTATGTTT 386 * ** * * * * * * * consensus_4872#1 ATCAACTATCGTATGGAAGCGTTCGAAATATTGTGGTCCTTTTCGATCATGCTCG-AAGC 582 consensus_4872#0 AGAAACTTTTCAATACCA-CGCTTNGGGCACTGANGCCCTTACNNCNCGTGTGAATAANG 653 consensus_4872#2 GATCGCATTTGTTTATTA----TTGGAAAGTTTAAATCGTT-CCAATAATCGCAATGTGA 441 * * * * * * * ** * consensus_4872#1 AGTCGCGTATACTGC-CGGCAAATGGATTTA---ATCTGCAAAAACGTTTCACGGTGGAG 638 consensus_4872#0 AGATTCGCATTCCACACCACTATTNCATNTACCAGTCCNCANGACCNTTT-GCGCATGCG 712 consensus_4872#2 ATCCTAACTCGTTGCACGGAGCATTGTTGCA---GATTTTATG--CCTTATAAAAACGAA 496 * * * * * * * * ** * consensus_4872#1 CCATGGTTCAAGTGTTATCTGTTGCTGCTCGGCTCGTACCGCGCGCTCTACGTATTGCAT 698 consensus_4872#0 CGATAACCNAAAGNGTAGCNGAGGCAANANAGNAAAGNAGGAGNCCCGNGAAGACGGGNA 772 consensus_4872#2 AAATC-CCGGCTTAGTGGCTGCAGCAACATCGAGCGGACAGCTGAATAATTGGATTGAGC 555 ** * * * ** * * * * consensus_4872#1 TGGGTCGATCGGGTACGGGCAGT-ACGGGCTCTTAACGGAACCCAATTAAGGCATTTATA 757 consensus_4872#0 CANTAACACCAGNAAGACACAGCCAAGGAAAATAGACAACCCCCCAGGATGGGTAAGACN 832 consensus_4872#2 TGTACA---CAGCTATTTCTAATTATCTGTTCGAGGTGAAACCCAATTTTATTATTTACA 612 * * * * * *** * * consensus_4872#1 NTTCCGG--GGTTGG---GTATTCCAAACCAGGTACTCNGT-TGTTGGTACCTGGCCTTT 811 consensus_4872#0 ACCCAAAAAGGTCAAACAGNATCNNAAAAAGAGCANAACACATAGCANCGCACAACNGCA 892 consensus_4872#2 GCACCAT---ATTGGAT-ATATTGCTGGAAATTTTGGCACGGTGCCAACATATAATCATC 668 * * ** * consensus_4872#1 AGCGGGGN-GCGAAATTGGCAGAACCCCTTTANAACACTTCGAGGAAACGCCATTTGTTA 870 consensus_4872#0 AACNAGGACACGCCCACAACCGGAACATGCGACAAAAACATGGCANAGCAGCAAGCACTA 952 consensus_4872#2 GCAGAAGATGACCAGTTTATAGACGATCTGAGTAACATT--------------------- 707 * * ** * consensus_4872#1 CCGGGCCCAGTACACGATTTGGGTAA---------------------------------- 896 consensus_4872#0 ACAANCGGCGCACAGAACNCAGACAGGAAACGGAGGAAAAAAAACAAANAAGAAAAACCA 1012 consensus_4872#2 ------------------------------------------------------------ consensus_4872#1 --------------------------- consensus_4872#0 CGCAGANACCGNAGGNTGGAGGAATAC 1039 consensus_4872#2 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||