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Anopheles gambiae
cluster # 4873 cluster # 4873       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4873#0 length = 1292 sequences # 3  
consensus_4873#1 length = 579 sequences # 1  

consensusID : consensus_4873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1292
fasta sequence
                              [GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAGTTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGACTTTTTCTTGCACGGAACGTGGCCT-GTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGTTTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCG-CCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGGATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGGTTACGCTGAACCTTTGCTCGCTGTGACGCCGG]

[+] EMBL CNS09P1S             [GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAGTTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGACTTTTTCTTGCACGGAACGTGGCCT GTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGTTTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCG CCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS09QLU             [                                                                                                                       ACTTTTTCTTGCACGGAAC  GGCTTGGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTTTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BM636469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTGGTTTACGAATATTGGTTCGGTTTTGGGCAGATTTCATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGGATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGGTTACGCTGAACCTTTGCTCGCTGTGACGCCGG]


>consensus_4873#0 GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAG TTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGA CTTTTTCTTGCACGGAACGTGGCCTGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCC GTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAA CAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAA CCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGT ATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCT TTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAAC TTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTG GGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGT TTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGT TGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCC ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG TACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCG GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT TCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATC GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC GTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG GCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATG GTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGG ATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGG TTACGCTGAACCTTTGCTCGCTGTGACGCCGG



consensusID : consensus_4873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence
                              [CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA]

[-] EMBL BX621002             [CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA]


>consensus_4873#1 CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCG TCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTC CTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAG TGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCT TCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGT CCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCA CTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCG TCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGC TAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACT GTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4873#0      GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAG 60
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      TTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGA 120
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      CTTTTTCTTGCACGGAACGTGGCCTGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCC 180
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      GTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAA 240
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      CAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAA 300
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      CCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGT 360
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      ATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCT 420
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      TTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAAC 480
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      TTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTG 540
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      GGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGT 600
consensus_4873#1      ------------------------------------------------------------
                                                                                  

consensus_4873#0      TTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGT 660
consensus_4873#1      ------------------------CCTGTGTTGGAGGTGATGGT--GGTGGTGGTGGTGT 34
                                               * *  ***      * ***  * **  * **  **

consensus_4873#0      TGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCC 720
consensus_4873#1      TTCTGCT--GCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCC 92
                      *   * *  ********************************************** ****

consensus_4873#0      ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG 780
consensus_4873#1      ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG 152
                      ************************************************************

consensus_4873#0      TACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCG 840
consensus_4873#1      TACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCG 212
                      ***************************** ******************************

consensus_4873#0      GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT 900
consensus_4873#1      GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT 272
                      ************************************************************

consensus_4873#0      TCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATC 960
consensus_4873#1      TCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATC 332
                      ************* ********************** ***********************

consensus_4873#0      GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC 1020
consensus_4873#1      GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC 392
                      ************************************************************

consensus_4873#0      GTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG 1080
consensus_4873#1      GTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG 452
                      ********************** *************************************

consensus_4873#0      GCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATG 1140
consensus_4873#1      GCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATG 512
                      ***************************** ******************************

consensus_4873#0      GTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGG 1200
consensus_4873#1      GTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGG 572
                      ************** ********************************** **********

consensus_4873#0      ATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGG 1260
consensus_4873#1      ATGTGTA----------------------------------------------------- 579
                      *******                                                     

consensus_4873#0      TTACGCTGAACCTTTGCTCGCTGTGACGCCGG 1292
consensus_4873#1      --------------------------------
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)