These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1292 fasta sequence [GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAGTTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGACTTTTTCTTGCACGGAACGTGGCCT-GTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGTTTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCG-CCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGGATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGGTTACGCTGAACCTTTGCTCGCTGTGACGCCGG] [+] EMBL CNS09P1S [GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAGTTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGACTTTTTCTTGCACGGAACGTGGCCT GTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGTTTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCG CCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCAC ] [+] EMBL CNS09QLU [ ACTTTTTCTTGCACGGAAC GGCTTGGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCCGTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAACAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAACCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGTATACCCATGTTTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCTTTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAACTTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTGGGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGA ] [-] EMBL BM636469 [ GCTGGTTTACGAATATTGGTTCGGTTTTGGGCAGATTTCATACCCACGGTTAGTTGAAGCTGTCGTTGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGGATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGGTTACGCTGAACCTTTGCTCGCTGTGACGCCGG] consensusID : consensus_4873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA] [-] EMBL BX621002 [CCTGTGTTGGAGGTGATGGTGGTGGTGGTGGTGTTTCTGCTGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATCGGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACCGTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTGGCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATGGTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGGATGTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4873#0 GGATTTCGGGGATAGGCTTGCGCGTATTTTTACACTCCCTTTTGTGTTAATTTGCTGTAG 60 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 TTGAGGTTATTCAGCCATCATTCCGATTTATCGCCGGGGGTTTTTTCGTTCTTGACGAGA 120 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 CTTTTTCTTGCACGGAACGTGGCCTGTCTCATCCTATTTCGGCTATGCTTGATAGCTGCC 180 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 GTTAGCTGGGATTGTAGCTCGCGCTCATTCAAACCGGAACTTTCGAATGCTTCGATGAAA 240 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 CAGTCATAAAACACCGAGTACGTTTTCATGGGTATTTTGGCGCGGCCCGACGTGTTGGAA 300 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 CCGTGCAAGTTGTACGCATTTAGTGCTTCATCAGAAAAGACAGTGGAAATGAATTTATGT 360 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 ATACCCATGTGTTTTGGCTTACGTTGAGCGAGAAAAGCAATATATTTTTTACGAATATCT 420 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 TTATTGTTTTGGATAGCATTTTCGAGACATTCCACGTCGGAGCGTTGTTGTAACGGAAAC 480 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 TTGAATCCGGGCACTGGCACGAGTTCGTAGCCTAAGTCCGAGATGCTGGGTGTCTTGGTG 540 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 GGAGTGGTGCTTTCCTTAGATTTGGTAGTGGTGGTGGCACCTTGTGGAAGGTTCGCTGGT 600 consensus_4873#1 ------------------------------------------------------------ consensus_4873#0 TTACGAATATTTGTTCGGTTTTGGGCAGATTTGATACCCACGGTTAGTTGAAGCTGTCGT 660 consensus_4873#1 ------------------------CCTGTGTTGGAGGTGATGGT--GGTGGTGGTGGTGT 34 * * *** * *** * ** * ** ** consensus_4873#0 TGGCGTTTCGCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGGGTCC 720 consensus_4873#1 TTCTGCT--GCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCC 92 * * * ********************************************** **** consensus_4873#0 ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG 780 consensus_4873#1 ACGAATCCGGATACGCCAGGCTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCG 152 ************************************************************ consensus_4873#0 TACTTGCCCATGGCCATGTCACCGTAAGTTTCGTCTTCCACGTAGTTTCCATCATCGTCG 840 consensus_4873#1 TACTTGCCCATGGCCATGTCACCGTAAGTGTCGTCTTCCACGTAGTTTCCATCATCGTCG 212 ***************************** ****************************** consensus_4873#0 GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT 900 consensus_4873#1 GCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTT 272 ************************************************************ consensus_4873#0 TCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCGATC 960 consensus_4873#1 TCGATCTCGGCCGGCTCATCAGTGTAGTCCGGTTCANCCTTGGGATTTATCGATTCGATC 332 ************* ********************** *********************** consensus_4873#0 GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC 1020 consensus_4873#1 GGGAGCTCAATGTATTCCGGTTCGATCACTTGCGCGGGAATTTGCTTCACTATTTGCACC 392 ************************************************************ consensus_4873#0 GTCTGCACGGTTTGCACCTGTGCCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG 1080 consensus_4873#1 GTCTGCACGGTTTGCACCTGTGTCGGCGTCGAGTCCGATGTATCCAATCCGTCGCTGCTG 452 ********************** ************************************* consensus_4873#0 GCACTGATGGACATTTTCGTTCGCTTGCTTGCGTGGCTTTGGAGACCGCGCTGTGGCATG 1140 consensus_4873#1 GCACTGATGGACATTTTCGTTCGCTTGCTAGCGTGGCTTTGGAGACCGCGCTGTGGCATG 512 ***************************** ****************************** consensus_4873#0 GTACGTTTTTGCGAGCTGAGATTTGACTGTGCCGATACATGGTGAGAGGTGGTGGCTTGG 1200 consensus_4873#1 GTACGTTTTTGCGAACTGAGATTTGACTGTGCCGATACATGGTGAGAGGNGGTGGCTTGG 572 ************** ********************************** ********** consensus_4873#0 ATGTGTACTACTTTGTCATCTCCGCTCTCTTCCGATTCTAATTTGTACGATTGAATGCGG 1260 consensus_4873#1 ATGTGTA----------------------------------------------------- 579 ******* consensus_4873#0 TTACGCTGAACCTTTGCTCGCTGTGACGCCGG 1292 consensus_4873#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||