These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 778 fasta sequence [GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGCCGTCCCATGCCGGCTCGAAGTACGTGCGCAGTAAATATCCTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGGACGATGCGAACCGGTCATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAAGCCGGCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGCGAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGAGGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATCCATCCGGAGGCTTCACTTCGACCTGTTTGGCACCGATGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCGCACTGCCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGCCGATCAGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCTCCG] [-] EMBL AGA283884 [GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGCCGTCCCATGCCGGCTCGAAGTACGTGCGCAGTAAATATCCTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGGACGATGCGAACCGGTCATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAAGCCGGCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGCGAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGCGCTGAAaaaaaa ] [+] EMBL AGA281935 [ AAAACACGGCAGAAATGTTCTTCCCAGCGAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGAGGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATCCATCCGGAGGCTTCACTTCGACCTGTTTGGCACCGA ] [-] EMBL BX615538 [ TGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGAGGGGTGGGAGGTGCGCCACCGCTCTACCACTTTTTGTATTCGCATCCATCCGGAGGCTTCACTTCGATTTCTTTCGTGATTTTGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCGCACTGCCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGCCGATCAGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCTCCG] consensusID : consensus_4881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGGAATCACACACACACACGGCAAAAACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAGATAAGCCTGCCGAGGGCAAGTGTTGATCTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGTGAGAGGGTTCATTCCAGCTTCCCAGCGTCAGGTGAATAATTGTGTGATTCCCCTTGAAACTGAGTGTGCGGTGGTGCGCGTGGTGTACTGTTAAGAACGGGTATCGGTGTCCTAAATTCAGCCAAAACACTGCTACAGATAGAAGAGAGAAATAAGAACACACACACACTCACTCAAGCTTCTTCTCCATTGAGATTCGGAACGTTTAAGATCAGCAAAAGAACCGTAAGAAATAGGAAACAGACAGATAGAGAGATAGGCATGAGCGCACAGAGAGAGAGAGGGAGAGCGAGCATCCTTTCGCCAGATGGGAAGGCTCCACACCCCACCCCATCCAAACGATTAGGACAATGTCTATGTAAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGTTTGACAGAAATCGGTTTTTGATCGATCGCCCGGGAAACTGGAAGGAG] [+] EMBL BM625505 [CCGGAATCACACACACACACGGCAAAAACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAGATAAGCCTGCCGAGGGCAAGTGTTGATCTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGTGAGAGGGTTCATTCCAGCTTCCCAGCGTCAGGTGAATAATTGTGTGATTCCCCTTGAAACTGAGTGTGCGGTGGTGCGCGTGGTGTACTGTTAAGAACGGGTATCGGTGTCCTAAATTCAGCCAAAACACTGCTACAGATAGAAGAGAGAAATAAGAACACACACACACTCACTCAAGCTTCTTCTCCATTGAGATTCGGAACGTTTAAGATCAGCAAAAGAACCGTAAGAAATAGGAAACAGACAGATAGAGAGATAGGCATGAGCGCACAGAGAGAGAGAGGGAGAGCGAGCATCCTTTCGCCAGATGGGAAGGCTCCACACCCCACCCCATCCAAACGATTAGGACAATGTCTATGTAAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGTTTGACAGAAATCGGTTTTTGATCGATCGCCCGGGAAACTGGAAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4881#0 GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTG 60 consensus_4881#1 ------------------------------------------------------------ consensus_4881#0 AAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAA 120 consensus_4881#1 ----------------------------CCGGAATCACACACACA-----CACGGCAAAA 27 ** *** ** ** ** ** * ** consensus_4881#0 ACGGACAGCCCGTGGTGCGAGATACGGCCGTCC-CATGCCGGCTCGAAGTACGTGCGCAG 179 consensus_4881#1 ACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAGATAAGCCTGCCGAGGGCAAGTGTTGAT 87 ** ******* * * * * *** * * *** ** * * *** * consensus_4881#0 TAAATATC-CTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGG-A 237 consensus_4881#1 CTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGTGAGAGGGTTCATTCCAGCTTCCCAGCG 147 ** * * * * * *** ** * * * * ** * consensus_4881#0 CGATGCGAACCGGT-CATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAA 296 consensus_4881#1 TCAGGTGAATAATTGTGTGATTCCCCTTGAAACTGA-GTGTGCGGTGGTGCGCGTGGTGT 206 * * *** * **** ** * ** *** * ** ** consensus_4881#0 GCCGGCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGC 356 consensus_4881#1 ACTGTTAA--GAACGGGT--ATCGGTGTCCTAAATTCA--GCCAAAACACTGCTACAGAT 260 * * ** * ** *** ** *** ** ** *** * * * consensus_4881#0 GAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCA 416 consensus_4881#1 AGAAGAGAGAAATAAGAACACACA--CACACTCACTCAAGCTTCT---TCTCCATTGAGA 315 * * ** * * *** ** ** * ** * ** **** * consensus_4881#0 AATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGAT 476 consensus_4881#1 TTCGGAACGTTTAAGATCAGCAAAAGAAC-----CGTAAGAAATAG--GAAACAGACAGA 368 * * **** * * * * * ** **** * **** * ** consensus_4881#0 TTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTT 536 consensus_4881#1 ---TAGAGAG-ATAGGCAT-GAGCGCACAGAGAGAGA--GAGGGAGAGCGAGCATCCTTT 421 ** * ** * * ** * * ***** * * ***** *** ** ****** consensus_4881#0 TGGAGGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATC-CATCCGGAG 595 consensus_4881#1 CGCCAGATGGGAAGGCTCCACACCCCACCC-CATCCAAACGATTAGGACAATGTCTATGT 480 * * ** *** * **** * * ** *** * * ** consensus_4881#0 GCTTCACTTCGACCTGTTTGGCACCGATGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCG 655 consensus_4881#1 AAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGT--------TTGACAGAAATCG 532 ** ** * * ** * * *** ** *** * * ** consensus_4881#0 CACTGCCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGC 715 consensus_4881#1 GTTTTTGATCGATCGCCCGGGAAACTGGAAGGAG-------------------------- 566 * * * **** * ** consensus_4881#0 CGATCAGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCT 775 consensus_4881#1 ------------------------------------------------------------ consensus_4881#0 CCG 778 consensus_4881#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||