|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence
[GCAGAATCGGCCGAGGCTACATATGGTAGAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATATTTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATGCTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGCAAAAAAAAAGTTATGATTCAACACTTAATAGTACCAACTAACAAAAAAACACATCCACACAAATCACCTAGAAACATCAGATACAGATAGGTTCTTTTTGTCTTATCATCACATAAATCACACAGTCAACAAATTAACTAAACAAACAAACCAAACAAACAATGCAATAATAAGCACAAGCCGCCAAAAGTGCACCAAACAGTGCAAAGAGAAGACACGTGGACGGGCGCGGGGAGACCGTGGGAACGCAAGCGTAGTAGAAGCGAGAGATAACCATNTAGGGCNGAGNNGTCGGGANGGTAGNCGCACNAAACTTNANTTCNAAACGCCGGGTAAGCAAAAGTTCCCGTGNTAGAGACCTTTTTCCCCGGGAAAGCTTGGGGAAAGGGTCAGGCGAAANAAACCCNGGGGGTCNAAACAAAAGACACCTTTGGGTTTTAACCCAAAAACCTTTGGAGNNGCTAACCAACACAGCCGTTTGTGCAAAGCCGAAGAAACGCCNACAANAGAGAGAAGACCNCCNNCGCCCGTGTTTTAGAACGCAAGNATGCGCAAAATTTTNGGGCNCGTTCCCATCTGGGGTCTGAAAGNTTTCACAAGGAGCACAAGGGGGGGAACTTACATTGTCACGNAATTGGCGCCCAAAGGGTGCCCGTTCTGGGAGCTCCGGGTTTTGGAAA]
[+] EMBL BX468596 [GCAGAATCGGCCGAGGCTACATATGGTAGAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATATTTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATGCTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGCAAAAAAAAAGTTATGATTCAACACTTAATAGTACCAACTAACAAAAAAACACATCCACACAAATCACCTAGAAACATCAGATACAGATAGGTTCTTTTTGTCTTATCATCACATAAATCACACAGTCAACAAATTAACTAAACAAACAAACCAAACAAACAATGCAATAATAAGCACAAGCCGCCAAAAGTGCACCAAACAGTGCAAAGAGAAGACACGTGGACGGGCGCGGGGAGACCGTGGGAACGCAAGCGTAGTAGAAGCGAGAGATAACCATNTAGGGCNGAGNNGTCGGGANGGTAGNCGCACNAAACTTNANTTCNAAACGCCGGGTAAGCAAAAGTTCCCGTGNTAGAGACCTTTTTCCCCGGGAAAGCTTGGGGAAAGGGTCAGGCGAAANAAACCCNGGGGGTCNAAACAAAAGACACCTTTGGGTTTTAACCCAAAAACCTTTGGAGNNGCTAACCAACACAGCCGTTTGTGCAAAGCCGAAGAAACGCCNACAANAGAGAGAAGACCNCCNNCGCCCGTGTTTTAGAACGCAAGNATGCGCAAAATTTTNGGGCNCGTTCCCATCTGGGGTCTGAAAGNTTTCACAAGGAGCACAAGGGGGGGAACTTACATTGTCACGNAATTGGCGCCCAAAGGGTGCCCGTTCTGGGAGCTCCGGGTTTTGGAAA]
consensusID : consensus_4895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence
[GCCTATTGCCAATATTCAGATTCAGTATTCTGTAACTTTATTAACCATTTCCTATTTACACACACACACACACTAACCTACAGCAGAAACAGAAAACTAGCAGCACATACAACTATAGTAGAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATATTTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATGCTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGC--AAAAAAAGTTATGATTCAACACTTAATAGTACCAACTAACAAAAAAACATACACACACAAATCACCTAGAAACATCAGATACAGATAGGTTCTTTTGTCTTATCATCACATAAATCACACAGTCAACAAATTAACTAAACAAACAAACAAACAAACAATGCAATAATAAGCACAAGCCGCAAAAGTGCACCAAACAGTGCAAAAGAAGACACGTGGACGGGCGCGGGGAGACGTGGGAACGCAACTATAAACAAAAATAACCATTTTTTTTTTTTCAAATTATAAACCGTACAACTCCTTTTTCTTCCGCAACTGGAAGTCGCAAACGGCAAAACTGTTACAACTGGCACAACTTACAACAAAACCCCTTACAACATGCTCTGTATAAAAGGATATAATGCAGTCTGTTGTGAATGCGTGTTGTGTTCGGGCTTTTGNTGTTGTTTTTTTGATAAAACTTCTATTTTTCTACTTAAATTAACATTTCTCAACCACTGAGCAGAGCAAATTTGCTACCTACTAATATGCTTGGAAAGAAGGAGATGCCTCCTGCAGGACGACAGCAATCAGCTCGCAGCTGTCC]
[+] EMBL AGA281759 [GCCTATTGCCAATATTCAGATTCAGTATTCTGTAACTTTATTAACCATTTCCTATTTACACACACACACACACTAACCTACAGCAGAAACAGAAAACTAGCAGCACATACAACTATAGTAGAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATATTTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATGCTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGC AAAAAAAGTTATGATTCAACACTTAATAGTACCAACTAACAGAAAAACATACACACACAAATCACCTAGAAACATCAGATACAGATAGGTTCTTTTGTCTTAGCATCACATAAATC ]
[+] EMBL BX621752 [ tACACACACACACGATAACCTACAGCAGAAACAGAAAACTAACAACACATACAACTATGGTAGAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATATTTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATGCTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGCAAAAAAAAAGTTATGATTCAACACTTAATAGTACCAACTAACAAAAAAACACATCCACACAAATCACCTAGAAACATCAGATACAGATAGGTTCTTTTGTCTTATCATCACATAAATCACACAGTCAACAAATTAACTAAACAAACAAACAAACAAACAATGCAATAATAAGCACAAGCCGCAAAAGTGCACCAAACAGTGCAAAAGAAGACACGTGGACGGGCGCGGGGAGACGTGGGAACGCAACTATAAACAAAAATAACCATTTTTTTTTTTTCAAATTATAAACCGTACAACTCCTTTTTCTTCCGCAACTGGAAGTCGCAAACGGCAAAACTGTTACAACTGGCACAACTTACAACAAAACCCCTTACAACATGCTCTGTATAAAAGGATATAATGCAGTCTGTTGTGAATGCGTGTTGTGTTCGGGCTTTTGNTGTTGTTTTTTTGATAAAACTTCTATTTTTCTACTTAAATTAACATTTCTCAACCACTGAGCAGAGCAAATTTGCTACCTACTAATATGCTTGGAAAGAAGGAGATGCCTCCTGCAGGACGACAGCAATCAGCTCGCAGCTGTCC]
[-] EMBL AGA280061 [ CTGACTAAAATGACTATTACGAGATAAAAGC AAAAAAAGTTATGATTCAACACTTAATAGTACCAACTAACAAAAAAACATACACACACAAATCACCTAGAAACATCAGATACAGATAGGTTCTTTTGTCTTATCATCACATAAATCACACAGTCAACAAATTAACTAAACAAACAAACAAACAAACAATGCAATAATAAGCACAAGCCGCAAAAGTGCACCAAACAGTGCAAAAGAAGACACGTGGACGGGCGCGGGGAGACGTGGGAACGCAACTATAAACAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4895#0 ------------------------------------------------------------
consensus_4895#1 GCCTATTGCCAATATTCAGATTCAGTATTCTGTAACTTTATTAACCATTTCCTATTTACA 60
consensus_4895#0 ------------------------------GCAGAATCGGCCGAGGCTACA--TATGGTA 28
consensus_4895#1 CACACACACACACTAACCTACAGCAGAAACAGAAAACTAGCAGCACATACAACTATAGTA 120
* ** ** * **** *** ***
consensus_4895#0 GAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATAT 88
consensus_4895#1 GAGACAACAGATAATGAAGGGAAGATTTTTTATAATCAAACGAAACAAAAGGTAAAATAT 180
************************************************************
consensus_4895#0 TTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATG 148
consensus_4895#1 TTAATGGTTGTTTGTTTAAATAAAACTAAAATAATTAACTCGTTCTCTTAGCAGATTATG 240
************************************************************
consensus_4895#0 CTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGCAAAAAAAAAGTTAT 208
consensus_4895#1 CTGAAATTCTCCCGTCTGACTAAAATGACTATTACGAGATAAAAGCAAAAAA--AGTTAT 298
**************************************************** ******
consensus_4895#0 GATTCAACACTTAATAGTACCAACTAACAAAAAAACACATCCACACAAATCACCTAGAAA 268
consensus_4895#1 GATTCAACACTTAATAGTACCAACTAACAAAAAAACATACACACACAAATCACCTAGAAA 358
************************************* * *******************
consensus_4895#0 CATCAGATACAGATAGGTTCTTTTTGTCTTATCATCACATAAATCACACAGTCAACAAAT 328
consensus_4895#1 CATCAGATACAGATAGGTTCTTTT-GTCTTATCATCACATAAATCACACAGTCAACAAAT 417
************************ ***********************************
consensus_4895#0 TAACTAAACAAACAAACCAAACAAACAATGCAATAATAAGCACAAGCCGCCAAAAGTGCA 388
consensus_4895#1 TAACTAAACAAACAAAC-AAACAAACAATGCAATAATAAGCACAAGCCGC-AAAAGTGCA 475
***************** ******************************** *********
consensus_4895#0 CCAAACAGTGCAAAGAGAAGACACGTGGACGGGCGCGGGGAGACCGTGGGAACGCAAGCG 448
consensus_4895#1 CCAAACAGTGCAAA-AGAAGACACGTGGACGGGCGCGGGGAGAC-GTGGGAACGCAACTA 533
************** ***************************** ************
consensus_4895#0 TAGTAGAAGCGAGAGATAACCATNTAGGGCNGAGNNGTCGGGANGGTAGNCGCACNAAAC 508
consensus_4895#1 TAAACAAAA--ATAACCATTTTTTTTTTTTCAAATTATAAACCGTACAACTCCTTTTTCT 591
** ** * * * * * * * * *
consensus_4895#0 TTNANTTCNAAACGCCGGGTAAGCAAAAGTTCCCGTGNTAGAGACCTTTTTCCCCGGGAA 568
consensus_4895#1 TCCGCAACTGGAAGTCGCAAACGGCAAAACTGTTACAACTGGCACAACTTACAACAAAAC 651
* * * * ** * * *** * * ** ** * * *
consensus_4895#0 AGCTTGGGGAAAGGGTCAGGCGAAANAAACCCNGGGGGTCNA-----AACAAAAGACACC 623
consensus_4895#1 CCCTTACAACATGCTCTGTATAAAAGGATATAATGCAGTCTGTTGTGAATGCGTGTTGTG 711
*** * * *** * * *** ** *
consensus_4895#0 TTTGGGTTTTAACCCAAAAACCTTTGGAGNNGCTAACCAACACAGCCGTTTGTGCAAA-G 682
consensus_4895#1 TTCGGGCTTTTGNTGTTGTTTTTTTGATAAAACT--TCTATTTTTCTACTTAAATTAACA 769
** *** *** **** ** * * * ** **
consensus_4895#0 CCGAAGAAACGCCNACAANAGAGAGAAGACCNCCNNCGCCCGTGTTTTAGAACGCAAGNA 742
consensus_4895#1 TTTCTCAACCACTGAGCAGAGCAAATTTGCTACCTACTAATATGCTTGGAAAGAAGGAGA 829
** * * * * ** * * ** * ** ** ** *
consensus_4895#0 TGCGCAAAATTTTNGGGCNCGTTCCCATCTGGGGTCTGAAAGNTTTCACAAGGAGCACAA 802
consensus_4895#1 TGC-----CTCCTGCAGGACGACAGCAATCAG---CTCGCAGCTGTCC------------ 869
*** * * * ** ** * ** ** * **
consensus_4895#0 GGGGGGGAACTTACATTGTCACGNAATTGGCGCCCAAAGGGTGCCCGTTCTGGGAGCTCC 862
consensus_4895#1 ------------------------------------------------------------
consensus_4895#0 GGGTTTTGGAAA 874
consensus_4895#1 ------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||