These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAGAGAGAGAGAGAGAGATAGAGTGAGAGCGAGCGAGAAAGAAACAGAGAGGCCCAACGTGTGTGTTATCAGCGGCTTCTGCTCCATCGGCTCCAACGCGCACCCATCGGCGACGCACGGCGCTGGGTGGTTTACACATTTCCACGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGAAGCAGTGCGCGCGTGCGTTCGTGCGCTTGTGTGCGCATCCAAACCGCTGTCATTGTTATTGTAGTTGTTATTGGTAAGTATTGTGCCGCGGATGTCATTCTTTTCAAGCTTATTGATTATGCAGCACAGTGGCTATTGAACTGCTGTTGCGTATGCACGGGTGACGCCATTCAATGGGACAATTGCTTGTTACAAAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGCTTTGAGGAACTGTGCACTCAAAAAATTAACAAAAAAACACAACAACATATTGTGGTGCGTTGTGTTTGGCTCCTTTGCTTCGCTTTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCATGTGTGCGCTGCG] [+] EMBL AL933519 [CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAGAGAGAGAGAGAGAGATAGAGTGAGAGCGAGCGAGAAAGAAACAGAGAGGCCCAACGTGTGTGTTATCAGCGGCTTCTGCTCCATCGGCTCCAACGCGCACCCATCGGCGACGCACGGCGCTGGGTGGTTTACACATTTCCACGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGAAGCAGTGCGCGCGTGCGTTCGTGCGCTTGTGTGCGCATCCAAACCGCTGTCATTGTTATTGTAGTTGTTATTGGTAAGTATTGTGCCGCGGATGTCATTCTTTTCAAGCTTATTGATTATGCAGCACAGTGGCTATTGAACTGCTGTTGCGTATGCACGGGTGACGCCATTCAATGGGACAATTGCTTGTTACAAAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGCTTTGAGGAACTGTGCACTCAAAAAATTAACAAAAAAACACAACAACATATTGTGGTGCGTTGTGTTTGGCTCCTTTGCTTCGCTTTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCATGTGTGCGCTGCG] consensusID : consensus_4902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 621 fasta sequence [CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTACAGCTAGTTGACAGCAGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCAAACGTTTTGGTCACAGAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTGCATGTGTTTTTGCACCGTTTGTAGTGTTTGCGATTATTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTGTAAATTGCTGCTCTTCTCGTGAGTGATCTATTTCGCGCATCGCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAAGAAATTGAAAGGGAGAGA] [+] EMBL BM599750 [CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTACAGCTAGTTGACAGCAGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCAAACGTTTTGGTCACAGAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTGCATGTGTTTTTGCACCGTTTGTAGTGTTTGCGATTATTATCGTTGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGTCAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTCTCTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTGTAAATTGCTGCTCTTCTCGTGAGTGATCTATTTCGCGCATCGCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAAGAAATTGAAAGGGAGAGA] [-] EMBL AGA280238 [ gagGTTTGCGATTATTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTG ] [+] EMBL AGA281934 [ TTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCCTTTGTTTTAATTTTGTTTCGTTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4902#0 CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTAC 60 consensus_4902#1 ---------------CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTA 45 * * * * * * * * * * * *** * ** * consensus_4902#0 CTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAG-AGAGAGAGAGAGAGATAGAG 119 consensus_4902#1 CAGCTAGTTGACAGCAGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCA 105 * ** **** ** * ** * ** * ** * * * ** *** * ** consensus_4902#0 TGAGAGCGAGCGAGAAAGA-----------AACAGAGAGGCCCAACGTGTGTGTTATCAG 168 consensus_4902#1 AACGTTTTGGTCACAGAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTG 165 * * * * * ** * * *** * * * * consensus_4902#0 CGGCTTCTGCTCCATCGGCTCCAACGC--GCACCCATCGGCGACGCACGGCGCTGGGTGG 226 consensus_4902#1 CATGTGTTTTTGCACCGTTTGTAGTGTTTGCGATTATTGTCGATGTTCGTCGC-----GT 220 * * * * ** ** * * * ** ** * *** * ** *** * consensus_4902#0 TTTACACATTTCCACGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGA 286 consensus_4902#1 CCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGA 280 * * ** ***** *** * * ** * ** * ** * * * ** consensus_4902#0 AGCAGTGCGCGCGTGCGTTCGTGCGCTTGTGTGC---GCATCCA--AACCGCTGTCATTG 341 consensus_4902#1 GACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCG 340 *** ** *** ** * ** * * * **** ** ** * * consensus_4902#0 TTATTGTAGTTGTTATTGGTAAGTAT---TGTGCCGCGGATGTCATTCTTTTCAAGCTTA 398 consensus_4902#1 TTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTG 400 ** * * * * ** ** * **** * * * * ** * * ** consensus_4902#0 -TTGATTATGCAGCACAGTGGCTATTGAACTGCTGTTGCGTATGCACGGGTG-ACGCCAT 456 consensus_4902#1 CTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTT 460 ** * * *** ** * ** * ** * * *** ** *** ** * consensus_4902#0 TCAATGGGACAATTGCTTGTTACAAAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGC 516 consensus_4902#1 TTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTC-TTTTGTTTTATTTTTGTTTCGT 519 * * * * * * * ** **** * ***** ** * * consensus_4902#0 TTTGAGGAACTGTGCACTCAAAAAATTAACAAAAAAACACAACAACATATTGTGGTGCGT 576 consensus_4902#1 TGTAAATTGCTGCTCTTCTCGTGAGTGATCTATTTCGCGCAT---CGCACTGTCGCGC-T 575 * * * *** * * * * * * * ** * * *** * ** * consensus_4902#0 TGTGTTTGGCTCCTTTGCTTCGCTTTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCA 636 consensus_4902#1 TACCTACTGGTTGGTGGCGTAAGGTTAAGAAATTGAAAGGGAGAGA-------------- 621 * * * * * ** * ** ** * * * * consensus_4902#0 TGTGTGCGCTGCG 649 consensus_4902#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||