These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence [AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGTGTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAAGATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTACGATCGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCTCGGCTTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGATGATGACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT] [+] EMBL BX604201 [AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGTGTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAAGATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCG ] [+] EMBL AGA280780 [ GGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAAGATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCCGCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCC ] [+] EMBL BX624620 [ GCCACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCTTTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCTGCAGGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGACGAAGCGGATGCGTGCCCTGCTGGTCGACTGGATGATTGAGATACAGGAGACGTTCGAGCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGTGACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAAGTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTACGATCGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCTCGGCTTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGATGATGACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT] consensusID : consensus_4917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [TCGAGGCAGAATCCCGCACGAGTGNAAATCGTAACGATTTGCTCAAGCATGGAGCGCACCGTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTACCGTTTCCTGCGCCNGTACGCTCGCGTTCAACCGCATTCCGACTCNATGACGCTCAGCGCGTGGCCCGGCTAGCAGTTCTCGGAGACGGGGCTGATGGATTACAAGCACGGTGCTGGTGCGCGATTCCAAGCTTGCCTGCGGTGCGCTCTTCATCGCTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACACTGGAATACTACTCAAGTTACAAGGTGGAGCAATTTAC] [+] EMBL BX469089 [TCGAGGCAGAATCCCGCACGAGTGNAAATCGTAACGATTTGCTCAAGCATGGAGCGCACCGTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTACCGTTTCCTGCGCCNGTACGCTCGCGTTCAACCGCATTCCGACTCNATGACGCTCAGCGCGTGGCCCGGCTAGCAGTTCTCGGAGACGGGGCTGATGGATTACAAGCACGGTGCTGGTGCGCGATTCCAAGCTTGCCTGCGGTGCGCTCTTCATCGCTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACACTGGAATACTACTCAAGTTACAAGGTGGAGCAATTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4917#0 AATTTGGATGATGGCGCGACCATCTCGAACAAAGGAAAGGCCGTTGCGGCCGCTGGTCGT 60 consensus_4917#1 ------------------------------------------------------------ consensus_4917#0 GTGGCGACGACCGGTGCTTCCCTTGCCGCACCGGACAAGAAGACGAAGGCTCGGGTGGAA 120 consensus_4917#1 ----------TCGAGGCAGA--ATCCCGCAC-GAGTGNAAATCGTAACGATTTGCTCAAG 47 ** ** * ****** * ** ** * * * * * consensus_4917#0 GATGAGAATGGTCCGTGGAAAATGCTAATCACCGAAAACGTTGCCCTAACCCGGGCC-GC 179 consensus_4917#1 CATG-GAGCGCACCGTGTTCCGTACCATCGAATTTGATCTCGGCTTTCCACTGATCCTAC 106 *** ** * ***** * * * * * * ** * * * ** * consensus_4917#0 CACTGCCGAGATCGGTGTGCCGCGCAAACAGCCGCCGGCAAGTGTCGAGGACTACGATCT 239 consensus_4917#1 CGTTTCCTGCGCCNGTACGCT-CGCGTTCAACCGCATTCCGAC-TCNATGAC-----GCT 159 * * ** * ** ** *** ** **** * ** * *** ** consensus_4917#0 TTGCTACTGGAACGATATCTACCAGGTGTCGGAGTACGCACAGGACATATTTGACTACCT 299 consensus_4917#1 CAGCGCGTGGCCCGG---CTAGCAGTTCTCGGAG-----ACGGGGC-TGATGGATTACAA 210 ** *** ** *** *** * ****** ** ** * * * ** *** consensus_4917#0 GCA-GGAGCGGGAGCCCGCGTACGACATTCCGGACTACATGGTGCGCCAGAAGCACTTGA 358 consensus_4917#1 GCACGGTGCTGGTGCGCGATTCCAAGCTT---GCCTGC--GGTGCGCTC----TTCATCG 261 *** ** ** ** ** ** * * * ** * ** * ******* * * consensus_4917#0 CGAAGCGGATGCGTGCCCTGCTGG--TCGACTGGATGATTGAGATACAGGAGACGTTCGA 416 consensus_4917#1 CTCGCCGTATGCTGGACCAGCCGGGATGGAACGAAACACTGGAATAC------TACTCAA 315 * ** **** * ** ** ** * ** * * * ** **** ** * consensus_4917#0 GCTGAACCATGAAACGCTCTATCTGGCCGTTAAAATACTCGACACCTACCTGTCCCGTGT 476 consensus_4917#1 GTTACAAGGTGGAGCAATTTAC-------------------------------------- 337 * * * ** * * * ** consensus_4917#0 GACGATCGGCCACGAAGTCTTGCAGCTCGTGGGAATCGCGGGCATGCTGATCGCCTCGAA 536 consensus_4917#1 ------------------------------------------------------------ consensus_4917#0 GTACGACGAACGTTTGCCCCCGACGGTCGATGACTTTGTTTACTTCTGCGACGGTGCGTA 596 consensus_4917#1 ------------------------------------------------------------ consensus_4917#0 CGATCGTAACGATTTGCTCAAGATGGAGCGCACCGTGTTCCGNACCATCGAATTTGATCT 656 consensus_4917#1 ------------------------------------------------------------ consensus_4917#0 CGGCTTTCCACTGTCCTACCGTTTCCTGCGCCGGTACGCTCGCGTCAACCGCATTTCCGA 716 consensus_4917#1 ------------------------------------------------------------ consensus_4917#0 TGATGACGCTCACGCTGGCCCGCTACATTCTCGAGACGGGGCT 759 consensus_4917#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||