These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 853 fasta sequence [AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCCATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAGAATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTCTAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGC-GTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAA-AACAGGCCGGAAAACAA-CATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCG-AGGCAGTGGGTCACTTTCGTTAGTTAA-AAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTTACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGTCCGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAATAAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAGCGCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGTTTTACACCACAGAT] [+] EMBL AL693205 [AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCCATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAGAATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTCTAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGC GTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAA AACAGGCCGGAAAACAA CATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCGCAGGCAGTGGGTCACTTTCGTTAGTTAACAAAGAATCTGG ] [-] EMBL BX619294 [ ATTGTGAGGATCTTTATACCNAGATGCGTTCAGCGTAAGACGTGACCGTACGCGGTTGAANNAA AAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAANAACAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCG AGGCAGTGGGTCACTTTCGTTAGTTAA AAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTTACGCCTTAAAGCAACGGGACTACAG ] [-] EMBL AGA282416 [ AGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCG AGGCAGTGGGTCACTTTCGTTAGTTAA AAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTTACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGTCCGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAATAAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAGCGCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGTTTTACACCACAGAT] consensusID : consensus_4919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [TTTTGTTTTTTTGGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGCGTTGAAAAAAAAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAACAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGG] [+] EMBL AGA280792 [TTTTGTTTTTTTGGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGCGTTGAAAAAAAAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAACAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4919#0 AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCC 60 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 ATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAG 120 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 AATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTC 180 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 TAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACAC 240 consensus_4919#1 TTTTGTTTTTTTG--GACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACAC 58 * * * *** * ********************************************* consensus_4919#0 AGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGA 300 consensus_4919#1 AGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGA 118 ************************************************************ consensus_4919#0 CCGTACGCGTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAA 360 consensus_4919#1 CCGTACGCGTTGAAAAAAA-AAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAA 177 ******************* **************************************** consensus_4919#0 CAGGCCGGAAAACAAC-ATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAG 419 consensus_4919#1 CAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAG 237 **************** ******************************************* consensus_4919#0 CTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAA 479 consensus_4919#1 CTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAA 297 ************************************************************ consensus_4919#0 AAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCGAGGCAGT 539 consensus_4919#1 AAAACTGACCACAGTCGCGGAACCTGCTGCCGG--------------------------- 330 ********************************* consensus_4919#0 GGGTCACTTTCGTTAGTTAAAAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATT 599 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 TACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGT 659 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 CCGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAA 719 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 TAAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAG 779 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 CGCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGT 839 consensus_4919#1 ------------------------------------------------------------ consensus_4919#0 TTTACACCACAGAT 853 consensus_4919#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||