These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG] [+] EMBL BM606167 [CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG] [+] EMBL AGA282128 [ GCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTCCACCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTG CTGCTGCCGTTGGTCAGACCGAGCCCGAAATTTGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAACCCCCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCGCGCTCGCTTTTCGCCCGTGAACAAAAGGATG ] consensusID : consensus_4971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACGGCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCGCAAGG] [+] EMBL BM624217 [CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACGGCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCGCAAGG] consensusID : consensus_4971#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT] [+] EMBL BM617735 [CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4971#0 CCGGGGCTTTCCGCTAGTTCG--TGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTC 58 consensus_4971#2 ------CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTC 54 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 TAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACG 118 consensus_4971#2 TAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACG 114 consensus_4971#1 ------------------------------------------------------------ consensus_4971#0 AACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATC 178 consensus_4971#2 AACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATC 174 consensus_4971#1 ------------------------------------------CCGCATTTGCTCACGATT 18 * ** * * *** ** consensus_4971#0 CAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCT 238 consensus_4971#2 CAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCT 234 consensus_4971#1 T------TGATTGCGGCAGATTGCGTTGTG--AATGGT-CATTTAACGACGGCAGGCAAA 69 ***** *** * * * * * ** * * * * ** consensus_4971#0 TGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGG 298 consensus_4971#2 TGCAGCAACACAAAGGAAAAGGAACTTCACAG---------------------------- 266 consensus_4971#1 AGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCG---------------TTGAGTTT 114 *** ** ** * * *** * consensus_4971#0 CTTCCGCAAAA-CACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 357 consensus_4971#2 -TTCCGCAAAA-CACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 324 consensus_4971#1 TTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 174 ********** ************************************************ consensus_4971#0 GCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTG 417 consensus_4971#2 GCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTG 384 consensus_4971#1 GCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCT------GCTGCCGTTG 228 ***************************** *** ********** ********** consensus_4971#0 GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 477 consensus_4971#2 GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 444 consensus_4971#1 GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 288 ************************************************************ consensus_4971#0 ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 537 consensus_4971#2 ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 504 consensus_4971#1 ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 348 ************************************************************ consensus_4971#0 CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGC 597 consensus_4971#2 CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT--------------------- 543 consensus_4971#1 CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGC 408 *************************************** consensus_4971#0 TTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGA 657 consensus_4971#2 ------------------------------------------------------------ consensus_4971#1 TTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGA 468 consensus_4971#0 ATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG----------- 706 consensus_4971#2 ------------------------------------------------------------ consensus_4971#1 ATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTG 528 consensus_4971#0 ------------------------------------------------------------ consensus_4971#2 ------------------------------------------------------------ consensus_4971#1 GCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGC 588 consensus_4971#0 ------------------------------------------------------------ consensus_4971#2 ------------------------------------------------------------ consensus_4971#1 ACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTC 648 consensus_4971#0 ----------------- consensus_4971#2 ----------------- consensus_4971#1 ATACAGTCGGCGCAAGG 665 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||