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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1036 fasta sequence
[CTGTGTGCGAGTGGCAGAGATTACAAGTCGACATTTTGTCGTATTCTGGGTGAAGTTCATCTAGCTAGACACACGATGAGGTGGACCTGGGGTTTATTGCTTTTCTTTGTGGGGCAAACAGTGGCCTACACCATCCCGGCGTTACGTTTCGAGTACCCGACAATGCGTGGATTCCGTGCCAGCATACCCGATACGCCCGGCTTACAGATGTTCGCATTCCACGCGCGCCTCAACAAACCCTTCGACCAGTTCGAGGAGGGGGATTACACCGAGGACGTAACGGCACCGGACGGGGATGGACGGTGGACGTTCGACACGAACAAACCCGCCCTCTCGAACGGTACCATCATCTACTACTGGGTGTATGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACACCGTAATTCGTACAAAGGCTACAGTAGCTCCTAAAAGT---ACGACCTCCACCACCACCACCGTTAAACCTACGACAACGACGCCTGCTCCCTGTCCACCGACACTTACCACATTCAATGGGGGCCAGCCGACCTGTGCCGGGAAGCTGCTCTTCGAGGACACGTTCGAGCAGGGTTCGAGCTTCGCACCGAAATGGCAGCATGAAGTGCGCATTCCACTGGACACTGAGTCGGCGGAATTCGTGTCATACCAGAGCTCGCCGGAAAACAGCTACATTGCAGCGGGCCGTCTCGTCATCGTACCGACGCTCGTGACGCAGACCGCGGACTACACCGATGAGCGTATCCGCACAGGAGAGCTGACACTTGCCGGCTGCACCTCACCCACCAACAATCCGTACGAATGCCAACGGAAAGCGGCCCGCTCGACGATTCTACCGCCCGTGGTGTCCGCCAAATTGAACACGAAACACTTTTTCCGCTTCCGGTACGGGCGGGTCGAGATACGGGCGAAGCTGCCGAAGGGAGATTGGATTTTTCCCAAGGCTTTACCTCCAAGCCGGTACGAAAACTACTACGGGATATGCGGACTACGCCTCCGGCCAGATGTGGATAGCGCACATTCTC]
[+] EMBL BX606775 [CTGTGTGCGAGTGGCAGAGATTACAAGTCGACATTTTGTCGTATTCTGGGTGAAGTTCATCTAGCTAGACACACGATGAGGTGGACCTGGGGTTTATTGCTTTTCTTTGTGGGGCAAACAGTGGCCTACACCATCCCGGCGTTACGTTTCGAGTACCCGACAATGCGTGGATTCCGTGCCAGCATACCCGATACGCCCGGCTTACAGATGTTCGCATTCCACGCGCGCCTCAACAAACCCTTCGACCAGTTCGAGGAGGGGGATTACACCGAGGACGTAACGGCACCGGACGGGGATGGACGGTGGACGTTCGACACGAACAAACCCGCCCTCTCGAACGGTACCAT ]
[+] EMBL BM640314 [ ccgggcGGCCTACACCATCCCGGCGGTACGTTTCGAGTACCCGACAATGCGTGGATTCCGTGCCAGCATACCCGATACGCCCGGCTTACAGATGTTCGCATTCCACGCGCGCCTCAACAAACCCTTCGACCAGTTCGAGGAGGGTGATTACACCGAGGACGTAACGGCACCGGACGGGGATGGACGATGGATGTTCGACACGAACAAACCCGCCCTCCCGAATGGTACCATCATCTACTACTGGGTGTATGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACACCGTAATTCGTACAAAGGCTACAGTAGCTCCTAAAAGT ACGACCTCCACCACCACCACCGTTAAACCTACGACAACGACGCCTGCTCCCTGTCCACCGACACTTACCACATTCAATGGGGGCCAGCCGACCTGTGCCGGGAAGCTGCTCTTCGAGGACACGTTCGAGCAGGGTTCGAGCTTCGCACCGAAATGGCAGCATGAAGTGCGCATTCCACTGGACACTGAGTCGGCGGAATTCGTGTCATACCAGAGCTCGCCGGAAAACAGCTACATTGCAGCGGGCCGTCTCGTCATCGTACCGACGCTCGTGACGCAGACCGCGGACTACACCGATGAGCGTATCCGCACAGGAGAGCTGACACTTGCCGGCTGCACCTCACCCACCAACAA ]
[+] EMBL AGA282906 [ ATCTACTACTGGGTGTACGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACACCGTAACTCGTACGAAGGCTACAGTAGCTCCGAAAAGTACGACGACCACCACCACCACCACCGTCAAACCTACGACAACGACGCCTCCTCCCTGTCCACCGACACTTACCACATTCAACGGGGGCCAGCCGACCTGTGCCGGGAAGCTGCTCTTCGAGGACACGTTCGAGCAGGGTTCGAGCTTCGCACCGAAATGGCAGCATGAAGTCCGCATTCCACTGGACACTGATTCGGCGGAATTCGTGTCATACCAGAGCTCGCCGGAAAACAGCTACATCGCAGCGGGCCGTCTCGTCATCGTACCGACACTCGTGACGCAGACCGCGGACTACACCGATGAGCGTATCCGCACAGGAGAGCTGACACTCGCCGGCTGCACCTCACCCACCAACAATCCGTACGAATGCCAACGGAAAGCGGCCCGCTCGACGATTCTACCGCCCGTGGTGTCCGCCAAATTGAACACGAAACACTTTTTCCGCTTCCGGTACGGGCGGGTCGAGATACGGGCGAAGCTGCCGAAGGGAGATTGGATTTTTCCCAAGGCTTTACCTCCAAGCCGGTACGAAAACTACTACGGGATATGCGGACTACGCCTCCGGCCAGATGTGGATAGCGCACATTCTC]
consensusID : consensus_4993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[AGAATCGCCCAGGTTTAAGGGGTTATTGCTATCTCTAATGTCGGGCAGACAGTGGNCTACACCATACCCGGGCGGTACGTTTCGAGTACCCGANAATGCGTGGATTCCGTGCCAGCATACCCGATACGCCCGGCATACAGATGTTCGCATTCCACGCGCGCCTCAACAAACCCTATCGACCAGTTCGAGGAGGGTGATTACACCGAGGACGCTAACGGCACCGGACGGGGATGGACGATGGATGTTCGACACGAACAAACCCGCCCTCCCGAACGGTACCATCATCTACTACTGGGCTGTATGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACACCGTAATTCGTACAAAGGCTACAGTAGCTCCTAAAAGTACGACCTCCACCACCACCACCGTTAAACCTACGACAACGACGCCTGCTCCCTGTCCACCGACACTTACCACATTCAATGGGGGCCAGACCGACCTGTGCCGGGAAGCTGCTCTTCGAGGGACACGTTCGAGCAGGGTTCGAGCTTCGCACCTGAAATGGCAGCATGAAGTGCGCATTCCACTGGACACTGAGTCGGCGGGAATTCGTGTCATAACAGAAC]
[+] EMBL AL933092 [AGAATCGCCCAGGTTTAAGGGGTTATTGCTATCTCTAATGTCGGGCAGACAGTGGNCTACACCATACCCGGGCGGTACGTTTCGAGTACCCGANAATGCGTGGATTCCGTGCCAGCATACCCGATACGCCCGGCATACAGATGTTCGCATTCCACGCGCGCCTCAACAAACCCTATCGACCAGTTCGAGGAGGGTGATTACACCGAGGACGCTAACGGCACCGGACGGGGATGGACGATGGATGTTCGACACGAACAAACCCGCCCTCCCGAACGGTACCATCATCTACTACTGGGCTGTATGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACACCGTAATTCGTACAAAGGCTACAGTAGCTCCTAAAAGTACGACCTCCACCACCACCACCGTTAAACCTACGACAACGACGCCTGCTCCCTGTCCACCGACACTTACCACATTCAATGGGGGCCAGACCGACCTGTGCCGGGAAGCTGCTCTTCGAGGGACACGTTCGAGCAGGGTTCGAGCTTCGCACCTGAAATGGCAGCATGAAGTGCGCATTCCACTGGACACTGAGTCGGCGGGAATTCGTGTCATAACAGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4993#0 CTGTGTGCGAGTGGCAGAGATTACAAGTCGACATTTTGTCGTATTCTGGGTGAAGTTCAT 60
consensus_4993#1 ------------------------------------------------------------
consensus_4993#0 CTAGCTAGACACACGATGAGGTGGACCTGGGGTTTATTGCTTTTCTT--TGTGGGGCAAA 118
consensus_4993#1 --------AGAATCGCCCAGGTTTA---AGGGGTTATTGCTATCTCTAATGTCGGGCAGA 49
* * ** **** * *** ******** * * *** ***** *
consensus_4993#0 CAGTGGCCTACACCATCCC--GGCGTTACGTTTCGAGTACCCGACAATGCGTGGATTCCG 176
consensus_4993#1 CAGTGGNCTACACCATACCCGGGCGGTACGTTTCGAGTACCCGANAATGCGTGGATTCCG 109
****** ********* ** **** ****************** ***************
consensus_4993#0 TGCCAGCATACCCGATACGCCCGGCTTACAGATGTTCGCATTCCACGCGCGCCTCAACAA 236
consensus_4993#1 TGCCAGCATACCCGATACGCCCGGCATACAGATGTTCGCATTCCACGCGCGCCTCAACAA 169
************************* **********************************
consensus_4993#0 ACCCT-TCGACCAGTTCGAGGAGGGGGATTACACCGAGGACG-TAACGGCACCGGACGGG 294
consensus_4993#1 ACCCTATCGACCAGTTCGAGGAGGGTGATTACACCGAGGACGCTAACGGCACCGGACGGG 229
***** ******************* **************** *****************
consensus_4993#0 GATGGACGGTGGACGTTCGACACGAACAAACCCGCCCTCTCGAACGGTACCATCATCTAC 354
consensus_4993#1 GATGGACGATGGATGTTCGACACGAACAAACCCGCCCTCCCGAACGGTACCATCATCTAC 289
******** **** ************************* ********************
consensus_4993#0 TACTGGG-TGTATGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACAC 413
consensus_4993#1 TACTGGGCTGTATGTGCAGTTCGCCAACGAGGGCTACTGGCTGACGGACAAGAAGCACAC 349
******* ****************************************************
consensus_4993#0 CGTAATTCGTACAAAGGCTACAGTAGCTCCTAAAAGTACGACCTCCACCACCACCACCGT 473
consensus_4993#1 CGTAATTCGTACAAAGGCTACAGTAGCTCCTAAAAGTACGACCTCCACCACCACCACCGT 409
************************************************************
consensus_4993#0 TAAACCTACGACAACGACGCCTGCTCCCTGTCCACCGACACTTACCACATTCAATGGGGG 533
consensus_4993#1 TAAACCTACGACAACGACGCCTGCTCCCTGTCCACCGACACTTACCACATTCAATGGGGG 469
************************************************************
consensus_4993#0 CCAG-CCGACCTGTGCCGGGAAGCTGCTCTTCGAGG-ACACGTTCGAGCAGGGTTCGAGC 591
consensus_4993#1 CCAGACCGACCTGTGCCGGGAAGCTGCTCTTCGAGGGACACGTTCGAGCAGGGTTCGAGC 529
**** ******************************* ***********************
consensus_4993#0 TTCGCACC-GAAATGGCAGCATGAAGTGCGCATTCCACTGGACACTGAGTCGGCGG-AAT 649
consensus_4993#1 TTCGCACCTGAAATGGCAGCATGAAGTGCGCATTCCACTGGACACTGAGTCGGCGGGAAT 589
******** *********************************************** ***
consensus_4993#0 TCGTGTCATACCAGAGCTCGCCGGAAAACAGCTACATTGCAGCGGGCCGTCTCGTCATCG 709
consensus_4993#1 TCGTGTCATAACAGAAC------------------------------------------- 606
********** **** *
consensus_4993#0 TACCGACGCTCGTGACGCAGACCGCGGACTACACCGATGAGCGTATCCGCACAGGAGAGC 769
consensus_4993#1 ------------------------------------------------------------
consensus_4993#0 TGACACTTGCCGGCTGCACCTCACCCACCAACAATCCGTACGAATGCCAACGGAAAGCGG 829
consensus_4993#1 ------------------------------------------------------------
consensus_4993#0 CCCGCTCGACGATTCTACCGCCCGTGGTGTCCGCCAAATTGAACACGAAACACTTTTTCC 889
consensus_4993#1 ------------------------------------------------------------
consensus_4993#0 GCTTCCGGTACGGGCGGGTCGAGATACGGGCGAAGCTGCCGAAGGGAGATTGGATTTTTC 949
consensus_4993#1 ------------------------------------------------------------
consensus_4993#0 CCAAGGCTTTACCTCCAAGCCGGTACGAAAACTACTACGGGATATGCGGACTACGCCTCC 1009
consensus_4993#1 ------------------------------------------------------------
consensus_4993#0 GGCCAGATGTGGATAGCGCACATTCTC 1036
consensus_4993#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||