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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[GCAGATTGCCGAGGTTAATGAGCTTTCCACTCTATATTACCTAAAAGGAGAGAATCTGAATGATTTGGAATCTTTTTCCCAGCTGTTCCTTCAATATGTACCTGCCTTCCTCGACTCTGTACCCTTCAATGGGTACGATTTCATAATTAGAAACTGCCAAAAAACGGACAGCTATTATCAACAACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATACTTGGCATGAACTGTACCTACTTAAAGGCCATAGCAACCAACAACCAAAAAAGCATACAGACCACAGGGAAGACACACACACATACACTCATAAACATCCCANCAGCTATGTTCCANACGAAGAAGGCCAANACATAATTCTCGGGTCAGGAACNACTGACGTTTATTGCAACCCCTCCCCTTTACTGCTCGAGTGATAAGNGCNNAACCGCAAATGCGAATCAGGTACTTGTCGGGAACGCANAGCGCCCACGGTTCATCTGTAAGCCAANNAATCCCGACNGTANNAGCCAACGCAGCCCATCCCCCAGTCACCGGGACATGACACAACCTCACTCTAACAGGGCTCNACCCTCACACGCAGGGCTCCCTTCTTNTCTACGGGCGGCTGGGCAGAAACAANGAAGACACAAGCGCCATTTGCGCACACCCCCNAGGGCACCATTACCCCACNCACCCCCAGCAACTCACCAACTTTACNCCGCAAGCGCNAAAAGACCGGGAAGGCAAACGGGTCCNACNAACCGGCGAACCNCACANAGCCACCCAAAAACCTTAAAACAAAGAANTGGCCCTCAT]
[+] EMBL AL692119 [GCAGATTGCCGAGGTTAATGAGCTTTCCACTCTATATTACCTAAAAGGAGAGAATCTGAATGATTTGGAATCTTTTTCCCAGCTGTTCCTTCAATATGTACCTGCCTTCCTCGACTCTGTACCCTTCAATGGGTACGATTTCATAATTAGAAACTGCCAAAAAACGGACAGCTATTATCAACAACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATACTTGGCATGAACTGTACCTACTTAAAGGCCATAGCAACCAACAACCAAAAAAGCATACAGACCACAGGGAAGACACACACACATACACTCATAAACATCCCANCAGCTATGTTCCANACGAAGAAGGCCAANACATAATTCTCGGGTCAGGAACNACTGACGTTTATTGCAACCCCTCCCCTTTACTGCTCGAGTGATAAGNGCNNAACCGCAAATGCGAATCAGGTACTTGTCGGGAACGCANAGCGCCCACGGTTCATCTGTAAGCCAANNAATCCCGACNGTANNAGCCAACGCAGCCCATCCCCCAGTCACCGGGACATGACACAACCTCACTCTAACAGGGCTCNACCCTCACACGCAGGGCTCCCTTCTTNTCTACGGGCGGCTGGGCAGAAACAANGAAGACACAAGCGCCATTTGCGCACACCCCCNAGGGCACCATTACCCCACNCACCCCCAGCAACTCACCAACTTTACNCCGCAAGCGCNAAAAGACCGGGAAGGCAAACGGGTCCNACNAACCGGCGAACCNCACANAGCCACCCAAAAACCTTAAAACAAAGAANTGGCCCTCAT]
consensusID : consensus_5072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 578 fasta sequence
[AACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATATTGGCATGAATGTAATATTAAAGCATAGCAACAACAACAAAAAAGCATACAGACACAGGAAGACACACACACATACATCATAACATCCAGCAGTATGTTAAAAGAAGAAGGCCAAACATATTTTGGTAGGAAATGAGTTATGAACCCTCCCTTTTTGCTCGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGCGAGAAGGTTTTTGTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTAAAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACACACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATGCTTATTAGAGTGTAAAGAAATGAAAGAAGTAAAAAAACGCAGCAGTAAAGGAAACATCGCCAAAATCGATGAACAGAAGGGGGCAAAGTGGATGAATTGGAGCAGAACAAAGCATTGTATCAGTATGTTTAAACAATATGAAA]
[+] EMBL BX608819 [AACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATATTGGCATGAATGTAATATTAAAGCATAGCAACAACAACAAAAAAGCATACAGACACAGGAAGACACACACACATACATCATAACATCCAGCAGTATGTTAAAAGAAGAAGGCCAAACATATTTTGGTAGGAAATGAGTTATGAACCCTCCCTTTCTGCTCGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGC AGAAGGTTTTTGTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTAAAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACACACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATGCTTATTAGAGTGTAAAGAAA ]
[-] EMBL BX611892 [ ATATTAAAGCATAGCAACAACAACAAAAAAGCATACAGACACAGGAAGACACACACACATACATCATAACATCCAGCAGTATGTTAAAAGAAGAAGGCCAAACATATTTTGGTAGGAAATGAGTTATGAACCCTCCCTTTTTGCTCGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGCGAGAAGGTTTTTGTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTAAAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACACACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATGCTTATTAGAGTGTAAAGAAATGAAAGAAGTAAAAAAACGCAGCAGTAAAGGAAACATCGCCAAAATCGATGAACAGAAGGGGGCAAAGTGGATGAATTGGAGCAGAACAAAGCATTGTATCAGTATGTTTAAACAATATGAAA]
[-] EMBL BX612060 [ TTTGGTGGGAAATGAGTTATGACCCCTCCCTTTTTGCTGGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGCGAGAAGGTTTTTGTACCAAAATCCGAGGTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5072#0 GCAGATTGCCGAGGTTAATGAGCTTTCCACTCTATATTACCTAAAAGGAGAGAATCTGAA 60
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 TGATTTGGAATCTTTTTCCCAGCTGTTCCTTCAATATGTACCTGCCTTCCTCGACTCTGT 120
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 ACCCTTCAATGGGTACGATTTCATAATTAGAAACTGCCAAAAAACGGACAGCTATTATCA 180
consensus_5072#1 ------------------------------------------------------------
consensus_5072#0 ACAACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATACTTGGCATGAACTGTAC 240
consensus_5072#1 --AACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATA-TTGGCATGAA-TGTAA 56
***************************************** ********** ****
consensus_5072#0 CTACTTAAAGGCCATAGCAACCAACAACCAAAAAAGCATACAGACCACAGGGAAGACACA 300
consensus_5072#1 T--ATTAAAG--CATAGCAAC-AACAAC-AAAAAAGCATACAGAC-ACAGG-AAGACACA 108
****** ********* ****** **************** ***** ********
consensus_5072#0 CACACATACACTCATAAACATCCCANCAGCTATGTTCCANACGAAGAAGGCCAANACATA 360
consensus_5072#1 CACACATACA-TCATAA-CATCC-AGCAG-TATGTT--AAAAGAAGAAGGCCAAA-CATA 161
********** ****** ***** * *** ****** * * ************ ****
consensus_5072#0 ATTCTCGGGTCAGGAACNACTGACGTTTATTGCAACCCCTCCCCTTTACTGCTCGAGTGA 420
consensus_5072#1 TTTT---GGTAGGAAATGA---------GTTATGAACCCTCCCTTTT--TGCTCGA-TGA 206
** *** * ** * ** * ******* *** ******* ***
consensus_5072#0 TAAGNGCNNAACCGCAAATGCGAATCAGGTACTTGTCGGGAACGCANAGCGCCCACGGTT 480
consensus_5072#1 TA--GGCAAA----CGAATGCGA-TCAGGTA-TTGTCGGAACGAAAGCGAGAAGGTTTTT 258
** ** * * ******* ******* ******* * * * * **
consensus_5072#0 CATCTGTAAGCCAANNAATCCCGACNGTANNAGCCAACGCAGCCC---ATCCCCCAGTCA 537
consensus_5072#1 GTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTA 318
* ** ** * * ** ** **** * * * ** ** *
consensus_5072#0 CCGGGACATGACACAACCTCACTCT----AACAGGGCTCNACCCTCACACGCAGGGCTCC 593
consensus_5072#1 AAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACA 378
** * * * * * ** * * * * * ** * *
consensus_5072#0 CTTCTTNTCTACGGGCGGCTGGGCAGAAACAANGAAGACACAAGCGCCATTTGCGC-ACA 652
consensus_5072#1 C---ACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATG 435
* * ** * * ** * ** ** * * * * * *
consensus_5072#0 CCCCCNAGGGCACCATTACCCCACNCACCCCCAGCAACTCACCAACTTT----ACNCCGC 708
consensus_5072#1 CTTATTAGAGTGTAAAGAAATGAAAGAAGTAAAAAAACGCAGCAGTAAAGGAAACATCGC 495
* ** * * * * * * *** ** ** ** ***
consensus_5072#0 AAGCGCNAAAAGACCGGGAAGGCAAACGGGTCCNACNAACCGGCGAACCNCACANAGCCA 768
consensus_5072#1 CAAAATCGATGAACAGAAGGGGGCAAAGTG---GATGAATTGGAGCAGAACAAAGCATTG 552
* * ** * ** ** * * * ** ** * * ** *
consensus_5072#0 CCCAAAAACCTTAAAACAAAGAANTGGCCCTCAT 802
consensus_5072#1 TATCAGTATGTTTAAACAATATGAAA-------- 578
* * ** ******
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||