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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence
[CAGAATCGCCCGAGG-TAAAAAC-ACAA--CAATCAGAACAGCTACAAAATGTTGGCTTTACATTTCAAACAAGGACATTACACATTCGTCATCAATTTCCACTCTCGCGTTCACTTCACTTACGTGTACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGGCTGAAAGTTACATTAAAGTAGCGAAAGTACTTTCACATACAACTGTTCATCATCAACTGACTGATTACATTTTTTTTTGCGTTTAAACACAGTTTGTATTTTAGTCAAAGTGTTTGTACCTTTCTCCG--TTTTTTTGAAGGGATATGAGGGCTCCGTT-G--TTTAAACTTATTTTGAAATCAACGACTCCCTCATGTTTACCCCTTTGAGTCGTGATGATTTCTTCAGCCGCTGTATTTATACGTTTACTACGCA-TGTTATGCTACCCAGTTTGGTCATTTACCAATATTAAACAGCGGTGACACTGACTGTGCCGCTTCACCAGAATTCCCCGGGANAGAGTGGGACACTTGGCAGGCTGGCCAAGTCGCACGGAATAGGGCAAGGAATTCGAGGCGAAATGCTCCGGAACAACGCGTGANCAAGCGGNAGGACGTCGGGCAGTGGGCCAGNCAAANTCATGTGACCCCNTGCGCTATACNACACAAGGCNGAGAAAACCCACGGGACGCACGAAAATGCGCCACCGANCAAGNGNCACGGACTGGCACCACNGGAACCACAAACCGAAAAGNCA]
[+] EMBL AL932348 [CAGAATCGCCCGAGG TAAAAAC ACAA CAATCAGAACAGCTACAAAATGTTGGCTTTACATTTCAAACAAGGACATTACACATTCGTCATCAATTTCCACTCTCGCGTTCACTTCACTTACGTGTACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGGCTGAAAGTTACATTAAAGTAGCGAAAGTACTTTCACATACAACTGTTCATCATCAACTGACTGATTACATTTTTTTTTGCGTTTAAACACAGTTTGTATTTTAGTCAAAGTGTTTGTACCTTTCTCCG TTTTTTTGAAGGGATATGAGGGCTCCGTT G TTTAAACTTATTTTGAAATCAACGACTCCCTCATGTTTACCCCTTTGAGTCGTGATGATTTCTTCAGCCGCTGTATTTATACGTTTACTACGCA TGTTATGCTACCCAGTTTGGTCATTTACCAATATTAAACAGCGGTGACACTGACTGTGCCGCTTCACCAGAATTCCCCGGGANAGAGTGGGACACTTGGCAGGCTGGCCAAGTCGCACGGAATAGGGCAAGGAATTCGAGGCGAAATGCTCCGGAACAACGCGTGANCAAGCGGNAGGACGTCGGGCAGTGGGCCAGNCAAANTCATGTGACCCCNTGCGCTATACNACACAAGGCNGAGAAAACCCACGGGACGCACGAAAATGCGCCACCGANCAAGNGNCACGGACTGGCACCACNGGAACCACAAACCGAAAAGNCA]
[+] EMBL AL694284 [ cCCCGAGGTTTAAAACAACAAACCAATCAGAACAGCTACAAAATGTTGGCTTTACATTTCAAACAAGGACATTACACATTCGTCATCAATTTCCACTCTCGCGTTCACTTCACTTACGTGTACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGGCTGAAAGTTACATTAAAGTAGCGAAAGTACTTTCACATACAACTGTTCATCATCAACTGACTGATTACATTTTTTTTTGCGTTTAAACACAGTTTGTATTTTAGTCAAAGTGTTTGTACCTTTCTCCGGTTTTTTTTGAAGGGATATGAGGGCTCCGTTAGTATTTAAACTTATTTTGAAATCAA GAATCCCTCATGTCTAACCCTTT TGTATTGATGATTTCTTCAGCCGCTGTATTTAT CGTTTA TACGCATTTTTATGCTACCCAGTTTGGTCATTTACCAATATTTAACAGCGGTGACACTGACTGTGCCGCTTCACCAG ATTCC GGA AGAGTGG AATTGGCA GCTGGC ]
consensusID : consensus_5079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[AATNCCCGCGGTAACAGCGGTGACACTGACTGTGCCGCTTCACAGATTCCGGAAGAGTGGAATTGGCAGCTGGCAATCGCACGATAGGCAAGAATTGCGGCGAATTCTCCGGACGAAGCGTGACTAGGGAGGATGTGGTTGTGGTCAGCAAATATTGTAACCTTTTGCTTATACAACGCTTAGTAGACCCACGGAGCACGGAATGCGCACAGGATCAAGTGAACTGTACTGGCACTCGGAATCTAACCGATAACAAACTCACCTCACGTGGGGGAGGGAGAGGGCACATTTTGTACGCATTTCGTCAAAACGCATTTTCGTAACGATGCGAGTGGGTTATTACGGTTTTACCCCTTTCGCACGCTATTTTAAGTCATAATTCTCTTAAATCTCTAGTCTAGTCTACAGCTGAGTTNGGTTGGAACCAGCTTTTNGGACCACTCGTCGGGTGGATNAAAGTAGTAGAAGATGCTAAAGTGGATCCCTTCATCTACGGCACGTCCATGATGCATACATATGATGCTACACGATCACACAGGGAACGTATGTTAAGTTCGTACATTTGCCTAAACAATAAAAATCAGTAGTACAACCAACCAACATTGACACCATGGGCCGACTTGAGGGAAAACGCACAAAAANAAAAAGGAAAACCCTAACTCATTANGTAATGCATAGCNATCATACAGAAATTTGACATGTACTGTGAAACCAGGC]
[+] EMBL AL692252 [AATNCCCGCGGTAACAGCGGTGACACTGACTGTGCCGCTTCACAGATTCCGGAAGAGTGGAATTGGCAGCTGGCAATCGCACGATAGGCAAGAATTGCGGCGAATTCTCCGGACGAAGCGTGACTAGGGAGGATGTGGTTGTGGTCAGCAAATATTGTAACCTTTTGCTTATACAACGCTTAGTAGACCCACGGAGCACGGAATGCGCACAGGATCAAGTGAACTGTACTGGCACTCGGAATCTAACCGATAACAAACTCACCTCACGTGGGGGAGGGAGAGGGCACATTTTGTACGCATTTCGTCAAAACGCATTTTCGTAACGATGCGAGTGGGTTATTACGGTTTTACCCCTTTCGCACGCTATTTTAAGTCATAATTCTCTTAAATCTCTAGTCTAGTCTACAGCTGAGTTNGGTTGGAACCAGCTTTTNGGACCACTCGTCGGGTGGATNAAAGTAGTAGAAGATGCTAAAGTGGATCCCTTCATCTACGGCACGTCCATGATGCATACATATGATGCTACACGATCACACAGGGAACGTATGTTAAGTTCGTACATTTGCCTAAACAATAAAAATCAGTAGTACAACCAACCAACATTGACACCATGGGCCGACTTGAGGGAAAACGCACAAAAANAAAAAGGAAAACCCTAACTCATTANGTAATGCATAGCNATCATACAGAAATTTGACATGTACTGTGAAACCAGGC]
consensusID : consensus_5079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[ACTCTCACGTTCACTTCACTTACGTGTACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGGCTGAAAGTTACATTAAAGTAGCGAAAGTACTTTCACATACAACTGTTCATCATCAACTGACTGATAACATTTTTTTTTGCGTTTAAATACAGTTTGTGTTTTAGTCAAAGTGTTTGTACCTTTCTCCGTGTTTTTGAAGGGATATGAGGGCTCCATTGTTTTAAACTTATTTTGAAATCAACGACTCCCTCATGTCTACCCCTTTTTTATGATTTCCTCCAGCCGCTGTATTTATCGTTTATACGCATTTTTATGCTACCCAGTTTGGTCGTTTACCAATATTTAACAGCGGTGACACTGACTGTGCCGCTTCACCAGATTCCGGAAGAGTGGAATTGGCAGCTGGCAATCGCACGATAGGCAAGAATTGCGGCGAATTCTCCGGACGAAGCGTGACTAGGGAGGATGTGGTTGTGGTCAGCAAATATTGTAACCTTTTGCTTATACAACGCTTAGTAGACCCACGGAGCACGGAATGCGCACAGGATCAAGTGAACTGTACTGGCACTCGGAATCTAACCGATAACAAACTCACCTCACGTGGGGGANGGAGAGGGCACATTTGTACGCATTTCGTCAAAACGCATTTTTCGTAAC]
[+] EMBL BX621148 [ACTCTCACGTTCACTTCACTTACGTGTACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGGCTGAAAGTTACATTAAAGTAGCGAAAGTACTTTCACATACAACTGTTCATCATCAACTGACTGATAACATTTTTTTTTGCGTTTAAATACAGTTTGTGTTTTAGTCAAAGTGTTTGTACCTTTCTCCGTGTTTTTGAAGGGATATGAGGGCTCCATTGTTTTAAACTTATTTTGAAATCAACGACTCCCTCATGTCTACCCCTTTTTTATGATTTCCTCCAGCCGCTGTATTTATCGTTTATACGCATTTTTATGCTACCCAGTTTGGTCGTTTACCAATATTTAACAGCGGTGACACTGACTGTGCCGCTTCACCAGATTCCGGAAGAGTGGAATTGGCAGCTGGCAATCGCACGATAGGCAAGAATTGCGGCGAATTCTCCGGACGAAGCGTGACTAGGGAGGATGTGGTTGTGGTCAGCAAATATTGTAACCTTTTGCTTATACAACGCTTAGTAGACCCACGGAGCACGGAATGCGCACAGGATCAAGTGAACTGTACTGGCACTCGGAATCTAACCGATAACAAACTCACCTCACGTGGGGGANGGAGAGGGCACATTTGTACGCATTTCGTCAAAACGCATTTTTCGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5079#0 CAGAATCGCCCGAGGTAAAAACACAACAATCAGAACAGCTACAAAATGTTGGCTTTACAT 60
consensus_5079#2 ------------------------------------------------------------
consensus_5079#1 ----AATNCCCGCGGTAACAGCGGTGACACTGACTGTGCCGCTTCACAGATTCCGGAAGA 56
consensus_5079#0 TTCAAACAAGGACATTACACATTCGTCATCAATTTCCACTCTCGCGTTCACTTCACTT-A 119
consensus_5079#2 -------------------------------------ACTCTCACGTTCACTTCACTT-A 22
consensus_5079#1 GTGGAATTGGCAGCTGGCAATCGCACGATAGGCAAGAATTGCGGCGAATTCTCCGGACGA 116
* * ** ** * *
consensus_5079#0 CGTGT-ACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGG--CTGAAAGTTACATTA 176
consensus_5079#2 CGTGT-ACTCTCCTGCATATACCTATAGTGTACCGGCCCCGGG--CTGAAAGTTACATTA 79
consensus_5079#1 AGCGTGACTAGGGAGGATGTGGTTGTGGTCAGCAAATATTGTAACCTTTTGCTTATACAA 176
* ** *** * ** * * * ** * * ** *** * *
consensus_5079#0 AAGTAGCGAAAGTACTTTCACATACAAC-TGTTCATCATCAACTGAC---TGATTACATT 232
consensus_5079#2 AAGTAGCGAAAGTACTTTCACATACAAC-TGTTCATCATCAACTGAC---TGATAACATT 135
consensus_5079#1 CGCTTAGTAGACCCACGGAGCACGGAATGCGCACAGGATCAAGTGAACTGTACTGGCACT 236
* * * ** ** * ** ***** *** * * ** *
consensus_5079#0 -----TTTTTTTGCGTTTAAACACAGTTTGTATTTTAGTCAAAGTGTTTGTACCTTTCTC 287
consensus_5079#2 -----TTTTTTTGCGTTTAAATACAGTTTGTGTTTTAGTCAAAGTGTTTGTACCTTTCTC 190
consensus_5079#1 CGGAATCTAACCGATAACAAACTCACCTCACGTGGGGGAGGGAGAGGGCACATTTTGTAC 296
* * * *** ** * * * ** * * ** *
consensus_5079#0 CGTTTTTTTGAAGGGATATGAGGGCTCCGTTGTTT-AAACTTATTTTGAAATCAACGACT 346
consensus_5079#2 CGTGTTTTTGAAGGGATATGAGGGCTCCATTGTTTTAAACTTATTTTGAAATCAACGACT 250
consensus_5079#1 GCATTTCGTCAAAACGCATTTTCGTAACGATGCGAGTGGGTTATTACGGTTTTA-----C 351
** * ** ** * * ** ***** * * *
consensus_5079#0 CCCTCATGTTTACCCCTTTGAGTCGTGATGATTTCTTCAGCCGCTGTATTTATACGTTTA 406
consensus_5079#2 CCCTCATGTCTACCCCTTT--TTTATGAT--TTCCTCCAGCCGCTGTATTTAT-CGTTTA 305
consensus_5079#1 CCCTTTCGCACGCTATTTTAAGTCATAAT--TCTCTTAAATCTCTAGTCTAGTCTACAGC 409
**** * * *** * * ** * ** * * ** * *
consensus_5079#0 CTACGCATGTT-ATGCTACCCAGTTTGGTCATTTACCAA-TATTAAACAGCGGTGACACT 464
consensus_5079#2 -TACGCATTTTTATGCTACCCAGTTTGGTCGTTTACCAA-TATTTAACAGCGGTGACACT 363
consensus_5079#1 TGAGTTNGGTTGGAACCAGCTTTTNGGACCACTCGTCGGGTGGATNAAAGTAGTAGAAGA 469
* ** * * * * * * * * * * ** ** *
consensus_5079#0 GACTGTGCCGCTTCACCAGAATTCCCCGGGANAGAGTGGGACACTTGGCAGGCTGGCCAA 524
consensus_5079#2 GACTGTGCCGCTTCACCAGATTCC-----GGAAGAGTGGAA---TTGGCAG-CTGGC--A 412
consensus_5079#1 TGCTAAAGTGGATCCCTTCATCTAC---GGCACGTCCATGAT-----GCATACATATGAT 521
** * ** * * * * * *** *
consensus_5079#0 GTCGCACGGAATAGGGCAAGGAATTCGAGGCGAAATGCTCCGGAACAACGCGTGANCAAG 584
consensus_5079#2 ATCGCACGATA---GGCAAGAA--TTGCGGCGAA-TTCTCCGGA-CGAAGCGTGACTA-- 463
consensus_5079#1 GCTACACGATC--ACACAGGGAACGTATGTTAAG----TTCGTACATTTGCCTAAACA-- 573
**** ** * * * * * ** * ** * * *
consensus_5079#0 CGGNAGGACGTCGGGCAGTGGGCCAGNCAAANTCATGTGACCCCNTGCGCTATACNACAC 644
consensus_5079#2 -GGGAGGATGT--GGTTGTGG-TCAGC--AAATATTGTAACCTTTTGC------TTATAC 511
consensus_5079#1 -ATAAAAAT------CAGTAGTACAACCAACCAACATTGACACCATGGGC----CGACTT 622
* * ** * ** * * ** ** *
consensus_5079#0 AAGGCNGAGAAAACCCACGGGACGCACGAAAATGCGCCACCGANCAAGNGNCACGGACTG 704
consensus_5079#2 AACGCTTAGTAGACCCACGGAGCACG---GAATGCGCACAGGATCAAGTGAACTGTACTG 568
consensus_5079#1 GAGG--GAAAACGCACAAAAANAAAAAGGAAAACCCTAACTCATTANGTAATGCATAGCN 680
* * * * * ** ** * * * * *
consensus_5079#0 GCACCACNGGAAC----CACAAACCGAAAAGNCA-------------------------- 734
consensus_5079#2 GCACTCGGAATCT----AACCGATAACAAACTCACCTCACGTGGGGGANGGAGAGGGCAC 624
consensus_5079#1 ATCATACAGAAATTTGACATGTACTGTGAAACCAGGC----------------------- 717
* * ** **
consensus_5079#0 -------------------------------------
consensus_5079#2 ATTTGTACGCATTTCGTCAAAACGCATTTTTCGTAAC 661
consensus_5079#1 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||