These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1005 fasta sequence [TGCCCTGCAGGTTAATACAATTTCGTCATCCCACAAAACAATACGTTCGCTGCGATTACAACGTTTGGGATTGTAATTTACATCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATACGGTGGAAAGCATACAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGCAGCTTCGCGCAGCTCGATTACCAACAGTAAAGGATCTAACACCAGNGCTTACGGAACCGTCCGATCATACGCTCCTGGANGCCTGGTACAGTCATCTTGCTGGCGAAGCTGCTATCCAGTCCATCATAGATTCCCCGGNTACGCCCCAGCACATTTAAAGCTGAACNGCCGATCAGTAACTTGGCACCCGGAAACGGGAGAACNAGAACTGNGAGGATTGAGCCAACACGTCAGTAGTACCGTNCAGCTCGAGTAACGAGTGAGCTACACCAGAGGGCACCGNGACACACGAGTGACATTGTCAGGNATGCGGTCAGTNCAAAACAGACATATAGTGAAACCCAGACCAACTGNCGGAGCATATTGGCAAAACTATCAGCATGCATACGAACGGAGGTCGGGAAACCGNATGGTGGAAAGATTGAGGATCGACGAAACNAAACGCAANAGATGAGCGAATAANTACCAGCAGGCACAGCGCGGAAAGGNTAAGGAGCACCCCGTATACAGACAGAGAGTAAGANAGACTACACCCCCGNGANACGCCCCAGAGGCAAATATTAGGACCGGAANAGACACCGGNAACAAAGCAACCAAAATGGGAGGCATTGGGATGACAAAGGGGCACGANTGGGGAANAAGTGCAGGGAAAGCCAGACGACCNGGAGAGCACNANGACAACAAACAAAGAAACAGGAGGGATACAACACAANCCGAGTNAGACGGCACGACCNCAACGCAAGCTGNGAAAGACGNGGGACGANAACNNAGGGACAGG] [+] EMBL AL693712 [TGCCCTGCAGGTTAATACAATTTCGTCATCCCACAAAACAATACGTTCGCTGCGATTACAACGTTTGGGATTGTAATTTACATCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATACGGTGGAAAGCATACAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGCAGCTTCGCGCAGCTCGATTACCAACAGTAAAGGATCTAACACCAGNGCTTACGGAACCGTCCGATCATACGCTCCTGGANGCCTGGTACAGTCATCTTGCTGGCGAAGCTGCTATCCAGTCCATCATAGATTCCCCGGNTACGCCCCAGCACATTTAAAGCTGAACNGCCGATCAGTAACTTGGCACCCGGAAACGGGAGAACNAGAACTGNGAGGATTGAGCCAACACGTCAGTAGTACCGTNCAGCTCGAGTAACGAGTGAGCTACACCAGAGGGCACCGNGACACACGAGTGACATTGTCAGGNATGCGGTCAGTNCAAAACAGACATATAGTGAAACCCAGACCAACTGNCGGAGCATATTGGCAAAACTATCAGCATGCATACGAACGGAGGTCGGGAAACCGNATGGTGGAAAGATTGAGGATCGACGAAACNAAACGCAANAGATGAGCGAATAANTACCAGCAGGCACAGCGCGGAAAGGNTAAGGAGCACCCCGTATACAGACAGAGAGTAAGANAGACTACACCCCCGNGANACGCCCCAGAGGCAAATATTAGGACCGGAANAGACACCGGNAACAAAGCAACCAAAATGGGAGGCATTGGGATGACAAAGGGGCACGANTGGGGAANAAGTGCAGGGAAAGCCAGACGACCNGGAGAGCACNANGACAACAAACAAAGAAACAGGAGGGATACAACACAANCCGAGTNAGACGGCACGACCNCAACGCAAGCTGNGAAAGACGNGGGACGANAACNNAGGGACAGG] consensusID : consensus_5102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 908 fasta sequence [GGCAGAATCGGCACGAGGAACGCAGCGGCGTACCAATTTCGTCATCCCACAAAACAATACGTTCGCTGCCGATTACAACG-TTTG-GGATTGTAATTTACCATCAAAACAG--AATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAAGGATCTAACACCAGCGCTTACGGAACCGTCCGATCATACGCTCCGCACGCCGTACAGTCATCTGCTGCCGAAGCGCTTCCAGTCCATCATAGATCCCCGCTCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAACGGGAGCAGACTGCAGCTTGACCAACGTCGTGTCGTCGCTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATTGTGACCCGCACTGCCGGAGGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCGGGTCGACGAAAAAGAAGTGACGATATTCGAGGACGCCGGCAGGTTGCACCCTTCGCAGGTAGCGATCCCGGTCGGCCGTGTATTGCCGTAGCCCGAAACCCATTGGGTGGCTTGGGTGAAAGGGAAGACNGGACAGCAAGGGAGGGAAAGTGTTGCCGGAGCCCGGAGACAAANTCGAGGCAGAGCAGGTTAGCAAATTCTTGGGCAGAGGCTTTCCAAACCNCGACCCTTNNAAAAGCCGGGAGGTCGCAAAAAGGCAGGAAACGCGCACCCCCAAAGCGCGGGAAATCACNGGGCACCGTGAGAAACNCTGTG] [+] EMBL BX467798 [GGCAGAATCGGCACGAGGAACGCAGCGGCGTACCAATTTCGTCATCCCACAAAACAATACGTTCGCTGCCGATTACAACG TTTG GGATTGTAATTTACCATCAAAACAG AATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAAGGATCTAACACCAGCGCTTACGGAACCGTCCGATCATACGCTCCGCACGCCGTACAGTCATCTGCTGCCGAAGCGCTTCCAGTCCATCATAGATCCCCGCTCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAACGGGAGCAGACTGCAGCTTGACCAACGTCGTGTCGTCGCTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATTGTGACCCGCACTGCCGGAGGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCGGGTCGACGAAAAAGAAGTGACGATATTCGAGGACGCCGGCAGGTTGCACCCTTCGCAGGTAGCGATCCCGGTCGGCCGTGTATTGCCGTAGCCCGAAACCCATTGGGTGGCTTGGGTGAAAGGGAAGACNGGACAGCAAGGGAGGGAAAGTGTTGCCGGAGCCCGGAGACAAANTCGAGGCAGAGCAGGTTAGCAAATTCTTGGGCAGAGGCTTTCCAAACCNCGACCCTTNNAAAAGCCGGGAGGTCGCAAAAAGGCAGGAAACGCGCACCCCCAAAGCGCGGGAAATCACNGGGCACCGTGAGAAACNCTGTG] [+] EMBL CNS08UJS [ ATACGTTCGCTGCCGATTACAACGTTTTGTGGATTGTAATTTACCATCAAAACAGTAAATGGGTGCGTTAAACAGCAAAGTTTC ] consensusID : consensus_5102#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [GATCCCCTGNGTTATACAACGCAGTGGTGTACAATTTCGTCTATTCCAGCAAAACAATACGTTCGCTGCCGATTACAAGCGTTATGGGATTGTAATTTACCAGTCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCTAGCTAGGATCCTCGCTCGCTCGTACACTGCTACATCAACAGAAGCCCCATCAGTCAGGAGCAATGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAATGGATCTAACACCAGCGCTTACGGAACCTGTCCTGATCATACGCTCCGCACTGCCGTACCAGTCATCTGCTGCCGAAGCGCTTCCAGATCCAGTCATAGATCCCCGCATCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAAGCGGGAGCAGACTGCAGCTTGACCAACGTCGCTGTCGTACGACTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATNNGTGACCCGACACTGCCGGAGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCNGGTCGACGAANNAAGAAGTGACGATATTCGAGGACGCCGAGGTTGCACCCTTCGCAAGTAGCGATCCCCGCTCGCCGTGTACTTGGCGTAGCCCAGACACCATGGTGCTGGTCNAANGAA] [+] EMBL AL692826 [GATCCCCTGNGTTATACAACGCAGTGGTGTACAATTTCGTCTATTCCAGCAAAACAATACGTTCGCTGCCGATTACAAGCGTTATGGGATTGTAATTTACCAGTCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCTAGCTAGGATCCTCGCTCGCTCGTACACTGCTACATCAACAGAAGCCCCATCAGTCAGGAGCAATGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAATGGATCTAACACCAGCGCTTACGGAACCTGTCCTGATCATACGCTCCGCACTGCCGTACCAGTCATCTGCTGCCGAAGCGCTTCCAGATCCAGTCATAGATCCCCGCATCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAAGCGGGAGCAGACTGCAGCTTGACCAACGTCGCTGTCGTACGACTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATNNGTGACCCGACACTGCCGGAGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCNGGTCGACGAANNAAGAAGTGACGATATTCGAGGACGCCGAGGTTGCACCCTTCGCAAGTAGCGATCCCCGCTCGCCGTGTACTTGGCGTAGCCCAGACACCATGGTGCTGGTCNAANGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5102#1 GGCAGAATCGGCACGAGGAACGCAGCGGCGTACCAATTTCGTC-ATCCCA-CAAAACAAT 58 consensus_5102#2 -GATCCCCTGNGTTATACAACGCAGTGGTGTAC-AATTTCGTCTATTCCAGCAAAACAAT 58 consensus_5102#0 ---------------TGCCCTGCAGGTTAATAC-AATTTCGTC-ATCCCA-CAAAACAAT 42 **** *** ********* ** *** ********* consensus_5102#1 ACGTTCGCTGCCGATTACAA-CGTT-TGGGATTGTAATTTACCA-TCAAAACAGAATGGG 115 consensus_5102#2 ACGTTCGCTGCCGATTACAAGCGTTATGGGATTGTAATTTACCAGTCAAAACAGAATGGG 118 consensus_5102#0 ACGTTCGCTGC-GATTACAA-CGTT-TGGGATTGTAATTTACA--TCAAAACAGAATGGG 97 *********** ******** **** **************** *************** consensus_5102#1 TGCGTTAAACAGCAAAGTTTCCCCAT-CGGTGGAAAGCAT-CAAGCAACAGGAAAATGGT 173 consensus_5102#2 TGCGTTAAACAGCAAAGTTTCCCCAT-CGGTGGAAAGCAT-CAAGCAACAGGAAAATGGT 176 consensus_5102#0 TGCGTTAAACAGCAAAGTTTCCCCATACGGTGGAAAGCATACAAGCAACAGGAAAATGGT 157 ************************** ************* ******************* consensus_5102#1 ACCC-AGC-AGGATCCTCGCTCGCC--TACACTGC-ACATC-AACAGAAGCCCCATCAGT 227 consensus_5102#2 ACCCTAGCTAGGATCCTCGCTCGCTCGTACACTGCTACATC-AACAGAAGCCCCATCAGT 235 consensus_5102#0 ACCC-AGC-AGGATCCTCGCTCGCC--TACACTGC-ACATCCAACAGAAGCCCCATCAGT 212 **** *** *************** ******** ***** ****************** consensus_5102#1 CAGGAGCAA-GCCGGAGCTTCGCGCAGCTCGATTACCAA-AGTAAA-GGATCTAACACCA 284 consensus_5102#2 CAGGAGCAATGCCGGAGCTTCGCGCAGCTCGATTACCAA-AGTAAATGGATCTAACACCA 294 consensus_5102#0 CAGGAGCAAGCCGGCAGCTTCGCGCAGCTCGATTACCAACAGTAAA-GGATCTAACACCA 271 ********* * * ************************ ****** ************* consensus_5102#1 GCGCTTACGGAACC-GTCC-GATCATACGCTCCGCAC-GCC--GTAC-AGTCATCT-GCT 337 consensus_5102#2 GCGCTTACGGAACCTGTCCTGATCATACGCTCCGCACTGCC--GTACCAGTCATCT-GCT 351 consensus_5102#0 GNGCTTACGGAACC-GTCC-GATCATACGCTCCTGGANGCCTGGTAC-AGTCATCTTGCT 328 * ************ **** ************* *** **** ******** *** consensus_5102#1 GCCGAAGC-GCTTCCAG-TCCA-TCATAGATCCCC--GC-TCGCCC-AGCACATTTAA-- 388 consensus_5102#2 GCCGAAGC-GCTTCCAGATCCAGTCATAGATCCCC--GCATCGCCC-AGCACATTTAA-- 405 consensus_5102#0 GGCGAAGCTGCTATCCAGTCCA-TCATAGATTCCCCGGNTACGCCCCAGCACATTTAAAG 387 * ****** *** * **** ******** *** * ***** *********** consensus_5102#1 CCGAACG-CCGATC-GTA--CTGG-ACCCGGAAA-CGGGAGCA----GACTGCA--GCTT 436 consensus_5102#2 CCGAACG-CCGATC-GTA--CTGG-ACCCGGAAAGCGGGAGCA----GACTGCA--GCTT 454 consensus_5102#0 CTGAACNGCCGATCAGTAACTTGGCACCCGGAAA-CGGGAGAACNAGAACTGNGAGGATT 446 * **** ****** *** *** ********* ****** * **** * ** consensus_5102#1 GA-CCAAC--GTCG----TGTCGTC--GCTCGAGTA-CGAG-GAGCTACAC---AGCGGC 482 consensus_5102#2 GA-CCAAC--GTCGC---TGTCGTACGACTCGAGTA-CGAG-GAGCTACAC---AGCGGC 503 consensus_5102#0 GAGCCAACACGTCAGTAGTACCGTNCAGCTCGAGTAACGAGTGAGCTACACCAGAGGGCA 506 ** ***** *** * *** ******** **** ********* ** * consensus_5102#1 CCGGAA-----GAG-GACATGC---AGGATGCG-TCGTTCAAAGAT-------TG-TGA- 523 consensus_5102#2 CCGGAA-----GAG-GACATGC---AGGATGCG-TCGTTCAAAGAT-------NNGTGA- 545 consensus_5102#0 CCGNGACACACGAGTGACATTGTCAGGNATGCGGTCAGTNCAAAACAGACATATAGTGAA 566 *** * *** ***** * ***** ** * ** * *** consensus_5102#1 --CCCG-C--ACTGCCGGAGGATAT----GCAATCTTCAGATCGAATACGAC---GAGTC 571 consensus_5102#2 --CCCGAC--ACTGCCGGAG-ATAT----GCAATCTTCAGATCGAATACGAC---GAGTC 593 consensus_5102#0 ACCCAGACCAACTGNCGGAGCATATTGGCAAAACTATCAGCATGCATACGAACGGAGGTC 626 ** * * **** ***** **** ** **** * ****** *** consensus_5102#1 GGTA--CCGT-TCGTGGAAG--TTGCGGGTCGACGAAAAA-GAAGTGAC-GATATTCGAG 624 consensus_5102#2 GGTA--CCGT-TCGTGGAAG--TTGCNGGTCGACGAANNAAGAAGTGAC-GATATTCGAG 647 consensus_5102#0 GGGAAACCGNATGGTGGAAAGATTGAGGATCGACGAAACNAAACGCAANAGATGAGCGAA 686 ** * *** * ****** *** * ******** * * * *** *** consensus_5102#1 GA-----------------CGCCGGCAGGTT-----GCACCC--TTCGCAGGTAGCGATC 660 consensus_5102#2 GA-----------------CGCCG--AGGTT-----GCACCC--TTCGCAAGTAGCGATC 681 consensus_5102#0 TAANTACCAGCAGGCACAGCGCGGAAAGGNTAAGGAGCACCCCGTATACAGACAGAGAGT 746 * *** * *** * ****** * ** ** ** consensus_5102#1 CCGGTCGGCCGTGTA-TTGCCGTA-GCCCGAAACCCATTGGGTGGCTTGGGTGAAAGGGA 718 consensus_5102#2 CCCGCTCGCCGTGTACTTGGCGTA-GCCCAGACACCATGGTGCTGGTCNAANGAA----- 735 consensus_5102#0 AAGANAGACTACACCCCCGNGANACGCCCCAGAGGCAAATATTAGGACCGGAANAGACAC 806 * * * **** ** * * consensus_5102#1 AGACNGGACAGCAA--GGGAGGGAAAGTGTTGCCGGAGCCCGGAGACAAANTCGAGGCAG 776 consensus_5102#2 ------------------------------------------------------------ consensus_5102#0 CGGNAACAAAGCAACCAAAATGGGAGGCATTGGGATGACAAAGGGGCACGANTGGGGAAN 866 consensus_5102#1 AGCAGGTTAGCAAATTCTTGGGC--AGAGGCTTTCCAAACCNCGACCCTTNNAAAAGCCG 834 consensus_5102#2 ------------------------------------------------------------ consensus_5102#0 AAGTGCAGGGAAAGCCAGACGACCNGGAGAGCACNANGACAACAAACAAAGAAACAGGAG 926 consensus_5102#1 GGAGGTCGCAAAAAGGCAGGAAACGCGCACCCCCAAAGCGCGGGAAATCACNGGGCACCG 894 consensus_5102#2 ------------------------------------------------------------ consensus_5102#0 GGATACAACACAANCCGAGTNAGACGGCACGACCNCAACGCAAGCTGNGAAAGACGNGGG 986 consensus_5102#1 TGAGAAACNCTGTG----- 908 consensus_5102#2 ------------------- consensus_5102#0 ACGANAACNNAGGGACAGG 1005 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||