cluster # 5114

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Anopheles gambiae
cluster # 5114 cluster # 5114 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5114#0 length = 1260 sequences # 3

consensus_5114#1 length = 455 sequences # 1

consensusID : consensus_5114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1260
fasta sequence

                              [TTCCCCCACAAGGACAAGCACGATGAGAAGCCTTCTACGTCCGGTGACCATGACTATGACGACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCCTCCTCCACTCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGCGGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAGCAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGCAACAGCAGCAGACACAGTCAATGCAACCGATCCTGCACTCGCCTTTGGGGACGAGCAACAGTGCCAGCACGACTGCCGTCGTCGGCGCTGCACCGCCCGGTACCGTCAGCTCGATCAGCTGCGACAATAGTGCATTAATTCTCAAGGTAGATTCTCTCGAATAGTAGTGAACCACGTGTGCGTACGGTGCAGCATGCCAGGGCAGGGAGTTTAAACGGAACCAGAATTTGTTTGGACACATCCCCC-ATCCCATTTCATTACCCACCATCCCCTTGCGGTGATTGCGACACTCTGCACATGTGT-T-TTTTTTTTTTTTTTTTAAATAATGTTTGATTGTGTTTCACAAAACTATAATCAGACAGCCTACGGCAAATAGCAAAGCGTTGATTATTAATTCTATTTTCTCTAACATTCATTATTGCACACATCTGCAACGAAATGATGCTGCCAGTGTGTGTGTACGAGAGAGAAAGAGAGAATATGAATTTAGTTGCAATGTAGTGGATCACGGATCTAAGGGCAAAGGAAAGCAAAGTAAGCTTAGAAGCGATCAGTGTCGACAAAAGGAGTGTGCCACCAAGGTTGCCACGCGAAATGGCATCCGGATCGAAGAAATGAAACTCGGTTTCCC-TTTCATTAAATATCTGCAGGGCGCGCTGCAATAGTCATAGATTTGTTTTGNTTTG-TTTAGATACGTACTGGTTGAATGTTTTTTTTTCCCCTTTTCATGACCCCCCTCATAGACCCCCTCCCATTTACAAGGTGTAGTAGAAACACACAAAAAACACGAGGAAAGGGACACACAACAGGGATACACATTTGGAATGAGCTAAGAACTAAAGCACTACGGCGGCCCTCTCTCGCCATGCAACGGGCGGGAGAGGGAGCGGTACGTACACAAACTAAGTTTAACGTTTAGACATATGAAACGCTGTAAAACAAAATCTAACGAATAATGTG]

[+] EMBL CNS08JTW             [TTCCCCCACAAGGACAAGCACGATGAGAAGCCTTCTACGTCCGGTGACCATGACTATGACGACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCCTCCTCCACTCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGCGGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAGCAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGCAACAGCAGCAGACACAGTCAATGCAACCGATCCTGCACTCGCCTTTGGGGACGAGCAACAGTGCCAGCACGACTGCCGTCGTCGGCGCTGCACCGCCCGGTACCGTCAGCTCGATCAGCTGCGACAATAGTGCATTAATTCTCAAGGTAGATTCTCTCGAATAGTAGTGAACCACGTGTGCGTACGGTGCAGCATGCCAGGGCAGGGAGTTTAAACGGAACCAGAATTTGTTTGGACACATCCCCC ATCCCATTTCATTACCCACCATCCCCTTGCGGTGATTGCGACACTCTGCACATGTGT T TTTTTTTTTTTTTTTTAAATAATGTTTGATTGTGTTTCACAAAACTATAATCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620865             [                                                                                                                                                                                                                                                                                                                                          TCCTGCACTCGCCTTTGGGGACGAGCAACAGTGCCAGCACGACTGCCGTCGTCGGCGCTGCACCGCCCGGTACCGTCAGCTCGATCAGCTGCGACAATAGTGCATTAATTCTCAAGGTAGATTCTCTCGAATAGTAGTGAACCACGTGTGCGTACGGTGCAGCATGCCAGGGCAGGGAGTTTAAACGGAACCAGAATTTGTTTGGACACATCCCCCTATCCCA TTCATTACCCACCATCCCCTTGCGGTGATTGCGACACTCTGCACCTGTGTGTGTGTGTGTGTTTTTTTTAAATAATGTTTGATTGTGTTTCACAAAACTATAATCAGACAGCCTACGGCAAATAGCAAAGCGTTGATTATTAATTCTATTTTCTCTAACATTCATTATTGCACACATCTGCAACGAAATGATGCTGCCAGTGTGTGTGTACGAGAGAGAAAGAGAGAATATGAATTTAGTTGCAATGTAGTGGATCACGGATCTAAGGGCAAAGGAAAGCAAAGTAAGCTTAGAAGCGATCAGTGTCGACAAAAGGAGTGTGCCACCAAGGTTGCCACGCGAAATGGCATCCGGATCGAAGAAATGAAACTCGGTTTCCC TTTCATTAAATATCTGCAGGGCGCGCTGCAATAGTCATAGATTTGTTTTGNTTTG TTTAGATACGTACTGGTTG                                                                                                                                                                                                                                                               ]
[-] EMBL CNS08JTX             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATCTGCAACGAAATGATGCTGCCAGTGTGTGTGTACGAGAGAGAAAGAGAGAATATGAATTTAGTTGCAATGTAGTGGATCACGGATCTAAGGGCAAAGTAAAGCAAAGCATGCTTAGAAGCGATCAGTGTCGACAAACGGAGTGTGCCACCAAGGTTGCCACGCGAGATGGCATCGGGATCGAAGAAATGAAACTCGGTTTCCCTTTTCATTAAATATCTGCAGGGCGCGCTGCAATAGTCATAGATTTGTTTTGTTTTGTTTTAGATACGTACTGTTTGAATGTTTTTTTTTCCCCTTTTCATGACCCCCCTCATAGACCCCCTCCCATTTACAAGGTGTAGTAGAAACACACAAAAAACACGAGGAAAGGGACACACAACAGGGATACACATTTGGAATGAGCTAAGAACTAAAGCACTACGGCGGCCCTCTCTCGCCATGCAACGGGCGGGAGAGGGAGCGGTACGTACACAAACTAAGTTTAACGTTTAGACATATGAAACGCTGTAAAACAAAATCTAACGAATAATGTG]




>consensus_5114#0
TTCCCCCACAAGGACAAGCACGATGAGAAGCCTTCTACGTCCGGTGACCATGACTATGAC
GACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCC
TCCTCCACTCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGC
GGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAG
CAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGC
AACAGCAGCAGACACAGTCAATGCAACCGATCCTGCACTCGCCTTTGGGGACGAGCAACA
GTGCCAGCACGACTGCCGTCGTCGGCGCTGCACCGCCCGGTACCGTCAGCTCGATCAGCT
GCGACAATAGTGCATTAATTCTCAAGGTAGATTCTCTCGAATAGTAGTGAACCACGTGTG
CGTACGGTGCAGCATGCCAGGGCAGGGAGTTTAAACGGAACCAGAATTTGTTTGGACACA
TCCCCCATCCCATTTCATTACCCACCATCCCCTTGCGGTGATTGCGACACTCTGCACATG
TGTTTTTTTTTTTTTTTTTTAAATAATGTTTGATTGTGTTTCACAAAACTATAATCAGAC
AGCCTACGGCAAATAGCAAAGCGTTGATTATTAATTCTATTTTCTCTAACATTCATTATT
GCACACATCTGCAACGAAATGATGCTGCCAGTGTGTGTGTACGAGAGAGAAAGAGAGAAT
ATGAATTTAGTTGCAATGTAGTGGATCACGGATCTAAGGGCAAAGGAAAGCAAAGTAAGC
TTAGAAGCGATCAGTGTCGACAAAAGGAGTGTGCCACCAAGGTTGCCACGCGAAATGGCA
TCCGGATCGAAGAAATGAAACTCGGTTTCCCTTTCATTAAATATCTGCAGGGCGCGCTGC
AATAGTCATAGATTTGTTTTGNTTTGTTTAGATACGTACTGGTTGAATGTTTTTTTTTCC
CCTTTTCATGACCCCCCTCATAGACCCCCTCCCATTTACAAGGTGTAGTAGAAACACACA
AAAAACACGAGGAAAGGGACACACAACAGGGATACACATTTGGAATGAGCTAAGAACTAA
AGCACTACGGCGGCCCTCTCTCGCCATGCAACGGGCGGGAGAGGGAGCGGTACGTACACA
AACTAAGTTTAACGTTTAGACATATGAAACGCTGTAAAACAAAATCTAACGAATAATGTG

consensusID : consensus_5114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CCTTCTACGTCCGGTGACCATGACTATGACGACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCCTCCTCCACGCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGCGGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAGCAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGCAGCAATGCCAACCTAGCATGCCAAAGCAGCAGCAGCAGCCAGTCGGAGGACATCAAACTCATCCTTCGGAAGCTGTCCAACATCGAGGAGCTGCTGAAGGTAGTTGCCGAACAGAGTCTAAGTCGTCTGACGACGATAAAGCAAGAGACTGGCGCCACACTGACGACTGCATCCGGTGGACAGCT]

[+] EMBL BX614882             [CCTTCTACGTCCGGTGACCATGACTATGACGACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCCTCCTCCACGCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGCGGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAGCAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGCAGCAATGCCAACCTAGCATGCCAAAGCAGCAGCAGCAGCCAGTCGGAGGACATCAAACTCATCCTTCGGAAGCTGTCCAACATCGAGGAGCTGCTGAAGGTAGTTGCCGAACAGAGTCTAAGTCGTCTGACGACGATAAAGCAAGAGACTGGCGCCACACTGACGACTGCATCCGGTGGACAGCT]




>consensus_5114#1
CCTTCTACGTCCGGTGACCATGACTATGACGACGAGCACAGCATGGACTCGGAGGAGCTG
CGACGCGTCCGGCACCAGGAACCGTCCTCCTCCTCCACGCTGGTCGGCATCGCGTCGAAC
AGCAATAGTAATAGTACAACCTGCCCCAGCGGCAACTCGCTACAGACGGTCGGGGTGGCC
AGCAACCACACGGTGCAGCTGCAGCCCCAGCAACACATCATATCGCTAGGCCAGACGCAC
ACCGGTCTGGTGGCGAGTAGCAGCAGCAGCAGCAATGCCAACCTAGCATGCCAAAGCAGC
AGCAGCAGCCAGTCGGAGGACATCAAACTCATCCTTCGGAAGCTGTCCAACATCGAGGAG
CTGCTGAAGGTAGTTGCCGAACAGAGTCTAAGTCGTCTGACGACGATAAAGCAAGAGACT
GGCGCCACACTGACGACTGCATCCGGTGGACAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5114#0      TTCCCCCACAAGGACAAGCACGATGAGAAGCCTTCTACGTCCGGTGACCATGACTATGAC 60
consensus_5114#1      ------------------------------CCTTCTACGTCCGGTGACCATGACTATGAC 30
                                                    ******************************

consensus_5114#0      GACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCC 120
consensus_5114#1      GACGAGCACAGCATGGACTCGGAGGAGCTGCGACGCGTCCGGCACCAGGAACCGTCCTCC 90
                      ************************************************************

consensus_5114#0      TCCTCCACTCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGC 180
consensus_5114#1      TCCTCCACGCTGGTCGGCATCGCGTCGAACAGCAATAGTAATAGTACAACCTGCCCCAGC 150
                      ******** ***************************************************

consensus_5114#0      GGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAG 240
consensus_5114#1      GGCAACTCGCTACAGACGGTCGGGGTGGCCAGCAACCACACGGTGCAGCTGCAGCCCCAG 210
                      ************************************************************

consensus_5114#0      CAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGC 300
consensus_5114#1      CAACACATCATATCGCTAGGCCAGACGCACACCGGTCTGGTGGCGAGTAGCAGCAGCAGC 270
                      ************************************************************

consensus_5114#0      AACAGCAGCAGACACAGTCAATGCAACCGATCCTGCACTCGCCTTTGGGGACGAGCAACA 360
consensus_5114#1      AGCAATGCCA-ACCTAGC--ATGCCAAAGCAGCAGCAGCAGCCAGTCGGAGGACATCAAA 327
                      * **    ** **  **   **** *  *   * ***   ***  * **        * *

consensus_5114#0      GTGCCAGCACGACTGCCGTC-GTCGGCGCTGCACCGCCCGGTACCGTCAGCTCGATCAGC 419
consensus_5114#1      CTCATCCTTCGGAAGCTGTCCAACATCGAGGAGCTGCTGAAGGTAGTTG--CCGAACAGA 385
                       *       **   ** ***   *  **  *  * **        **     *** *** 

consensus_5114#0      TGCGACAATAGTGCATTAATTCTCAAGGTAGATTCTCTCGAATAGTAGTGAACCACGTGT 479
consensus_5114#1      GTCTA-AGTCGTCTGACGACGATAAAGCAAGAGACTGGCG--CCACACTGA----CGACT 438
                        * * * * **      *   * ***  ***  **  **      * ***    **  *

consensus_5114#0      GCGTACGGTGCAGCATGCCAGGGCAGGGAGTTTAAACGGAACCAGAATTTGTTTGGACAC 539
consensus_5114#1      GCATCCGGTGGACAGCT------------------------------------------- 455
                      ** * ***** *                                                

consensus_5114#0      ATCCCCCATCCCATTTCATTACCCACCATCCCCTTGCGGTGATTGCGACACTCTGCACAT 599
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      GTGTTTTTTTTTTTTTTTTTTAAATAATGTTTGATTGTGTTTCACAAAACTATAATCAGA 659
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CAGCCTACGGCAAATAGCAAAGCGTTGATTATTAATTCTATTTTCTCTAACATTCATTAT 719
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      TGCACACATCTGCAACGAAATGATGCTGCCAGTGTGTGTGTACGAGAGAGAAAGAGAGAA 779
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      TATGAATTTAGTTGCAATGTAGTGGATCACGGATCTAAGGGCAAAGGAAAGCAAAGTAAG 839
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CTTAGAAGCGATCAGTGTCGACAAAAGGAGTGTGCCACCAAGGTTGCCACGCGAAATGGC 899
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      ATCCGGATCGAAGAAATGAAACTCGGTTTCCCTTTCATTAAATATCTGCAGGGCGCGCTG 959
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CAATAGTCATAGATTTGTTTTGNTTTGTTTAGATACGTACTGGTTGAATGTTTTTTTTTC 1019
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      CCCTTTTCATGACCCCCCTCATAGACCCCCTCCCATTTACAAGGTGTAGTAGAAACACAC 1079
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      AAAAAACACGAGGAAAGGGACACACAACAGGGATACACATTTGGAATGAGCTAAGAACTA 1139
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      AAGCACTACGGCGGCCCTCTCTCGCCATGCAACGGGCGGGAGAGGGAGCGGTACGTACAC 1199
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      AAACTAAGTTTAACGTTTAGACATATGAAACGCTGTAAAACAAAATCTAACGAATAATGT 1259
consensus_5114#1      ------------------------------------------------------------
                                                                                  

consensus_5114#0      G 1260
consensus_5114#1      -