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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1042 fasta sequence
[CCGGTGGCTCCTTCTTTGGCGGATTTCTGATCGGTGAGGTTGGCACACGCGAAGCATTCCGATACATGGGCCTGGTAGCGGTGGCTGGTGGACTTGCTTACAAATTCATACATTCAATCTGGTTGCGTAAATATGACAATCCTGACGCCGACGATGAAGCCGTGGAAAAGGGTGAGGCCGAAAAGCTGTACACCGATGGTGACGAGCCGAAGACGAAAGATCAAGGTACATCGATGTCGCAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTACCGCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGCAGCTACAACATTGAGTTCGTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGGTGGATCTACTGAAGTCAGCGGTCGACATTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTAAAGCGTCCGATCAGTCACTCAACTCGAAACGTGCCGACAGTGCACCACGTTTGAATCATTCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGAAACTGAACAACGCGACTCGATCACCGAGGGAGAGGAAGAGAACTATAAGCTAGAGCTCAGCAAGAAAGCTTCCCGTGGCCATGTGCTCAATGACATCCCCGAAAAGACGGTGGAAGCGGTAGACACCGCTGCAGCTACGCCACCGGTGACTCCGGTGGTCGAGGGCACGGACACAACTACCACCACTACCACCACCACCACCACCACTCCGAGCATAGCAGATGATCACACGACAGCCAATGCTTCTTGATAAAGGGACGATGGATGTAGTTATGAGCGTGAAGAACGGATTGTGCTGCAAAGGTGCTTGTGCATTTCGATAGCAGCAGAGATGCTTTCTAGCATCTTTTGCTTTGCCTATCATGGGGCCGCACGCTATTGATTGCCGATGCAGTGAATCTCCATTCCCAATTAGTATTGTTTGTGCGTTCCTCGAGATTATGAATATTTAGCGCAAATCAGCGC]
[+] EMBL BM598069 [CCGGTGGCTCCTTCTTTGGCGGATTTCTGATCGGTGAGGTTGGCACACGCGAAGCATTCCGATACATGGGCCTGGTAGCGGTGGCTGGTGGACTTGCTTACAAATTCATACATTCAATCTGGTTGCGTAAATATGACAATCCTGACGCCGACGATGAAGCCGTGGAAAAGGGTGAGGCCGAAAAGCTGTACACCGATGGTGACGAGCCGAAGACGAAAGATCAAGGTACATCGATGTCGCAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTACCGCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGCAGCTACAACATTGAGTTCGTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGGTGGATCTACTGAAGTCAGCGGTCGACATTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTAAAGCGTCCGATCAGTCACTCAACTCGAAACGTGCCGACAGTGCACCACGTTTGAATCATTCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGAAACTGAACAACGCGACTCGATCACCGAGGGAGAGGAAGAGAACTATAAGCTAGAGCTCAGC ]
[+] EMBL BX623303 [ ACGACGCAGCAGCTACAACATTGAGTTCGTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGGTGGATCTACTGAAGTCAGCGGTCGACATTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTAAAGCGTCCGATCAGTCACTCAACTCGAAACGTGCCGACAGTGCACCACGTTTGAATCAATCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGAAACTGAACAACGCGACTCGATCACCGAGGGAGAGGAAGAGAACTATAAGCTAGAGCTCAGCAAGAAAGCTTCCCGTGGCCATGTGCTCAATGACATCCCCGAAAAGACGGTGGAAGCGGTAGACACCGCTGCAGCTACGCCACCGGTGACTCCGGTGGTCGAGGGCACGGACACAACTACCACCACTACCACCACCACCACCACCACTCCGAGCATAGCAGATGATCACACGACAGCCAATGCTTCTTGATAAAGGGACGATGGATGTAGTTATGAGCGTGAAGAACGGATTGTGCTGCAAAGGTGCTTGTGCATTTCGATAGCAGCAGAGATGCTTTCTAGCATCTTTTGCTTTGCCTATCATGGGGCCGCACGCTATTGATTGCCGATGCAGTGAATCTCCATTCCCAATTAGTATTGTTTGTGCGTTCCTCGAGATTATGAATATTTAGCGCAAATCAGCGC]
consensusID : consensus_5124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[GGCCAAGAATTCGGCACGNAGGACTGATCGGTGAGGTTGGCACACGCGAAGCATTCCGATACATGGGCCTGGTAGCGGTGGCTGGTGGACTTGCTTACAAATTCATACATTCAATCTGGTTGCGTAAATATGACAATCCTGACGCCGACGATGAAGCCGTGGAAAAGGGTGAAGCCGAAAAGCTGTACACCGACGGTGACGAGCCGAAGACGAAAGATCAAGGTACATCGATGTCGCAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTACCGCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGCAGGCTACAACATTGAGTTCGTTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGAGTGGATCTACTGAAGTCAGCGGTACGACATTTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTCAAAGGCGTCCGATCAGTCACTCGAACTCCGGAAAACGTGCCCGACAAGGTGGCAACCACGGTTTNGGAACTCAAATTCGGANGGAAGCATTCTCGGCAAAGCGGATCCCTAAGGTTGCGGANTTA]
[+] EMBL BX467923 [GGCCAAGAATTCGGCACGNAGGACTGATCGGTGAGGTTGGCACACGCGAAGCATTCCGATACATGGGCCTGGTAGCGGTGGCTGGTGGACTTGCTTACAAATTCATACATTCAATCTGGTTGCGTAAATATGACAATCCTGACGCCGACGATGAAGCCGTGGAAAAGGGTGAAGCCGAAAAGCTGTACACCGACGGTGACGAGCCGAAGACGAAAGATCAAGGTACATCGATGTCGCAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTACCGCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGCAGGCTACAACATTGAGTTCGTTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGAGTGGATCTACTGAAGTCAGCGGTACGACATTTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTCAAAGGCGTCCGATCAGTCACTCGAACTCCGGAAAACGTGCCCGACAAGGTGGCAACCACGGTTTNGGAACTCAAATTCGGANGGAAGCATTCTCGGCAAAGCGGATCCCTAAGGTTGCGGANTTA]
consensusID : consensus_5124#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[GCCCCAGGGTTAGTACATCGATGTCACAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTGCCGCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGTCAGCTACAACATTGAGTTCGTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGAGTGGATCTACTGAAGTCAGCGGTCGACATTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTAAAGCGTCCGATCAGTCACTCAACTCGAAACGTGCCGACAGTGCACCACGTTTGAATCAATCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGACCTGCCGTCGTCTGTGCTGTCGCGCCACAGGAAAAAGCACCATCAGAGCGGCATTCTGGTCGTGAAGGCCTGCAGCCAGGACGGGGATTTGGATCTGCGCAATTAT]
[+] EMBL AL693317 [GCCCCAGGGTTAGTACATCGATGTCACAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTGCCGCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGTCAGCTACAACATTGAGTTCGTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGAGTGGATCTACTGAAGTCAGCGGTCGACATTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTAAAGCGTCCGATCAGTCACTCAACTCGAAACGTGCCGACAGTGCACCACGTTTGAATCAATCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGACCTGCCGTCGTCTGTGCTGTCGCGCCACAGGAAAAAGCACCATCAGAGCGGCATTCTGGTCGTGAAGGCCTGCAGCCAGGACGGGGATTTGGATCTGCGCAATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5124#0 CCGGTGGCTCCTTCTTTGGC--GGATTTCTGATCGGTGAGGTTGGCACACGCGAAGCATT 58
consensus_5124#1 -----GGCCAAGAATTCGGCACGNAGGACTGATCGGTGAGGTTGGCACACGCGAAGCATT 55
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 CCGATACATGGGCCTGGTAGCGGTGGCTGGTGGACTTGCTTACAAATTCATACATTCAAT 118
consensus_5124#1 CCGATACATGGGCCTGGTAGCGGTGGCTGGTGGACTTGCTTACAAATTCATACATTCAAT 115
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 CTGGTTGCGTAAATATGACAATCCTGACGCCGACGATGAAGCCGTGGAAAAGGGTGAGGC 178
consensus_5124#1 CTGGTTGCGTAAATATGACAATCCTGACGCCGACGATGAAGCCGTGGAAAAGGGTGAAGC 175
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 CGAAAAGCTGTACACCGATGGTGACGAGCCGAAGACGAAAGATCAAGGTACATCGATGTC 238
consensus_5124#1 CGAAAAGCTGTACACCGACGGTGACGAGCCGAAGACGAAAGATCAAGGTACATCGATGTC 235
consensus_5124#2 ---------------------------------GCCCCAGGGTTA--GTACATCGATGTC 25
* * * * * * *************
consensus_5124#0 GCAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTACC 298
consensus_5124#1 GCAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTACC 295
consensus_5124#2 ACAGGAGCGCCTATCGCTCATGATAAAGTACAACCAGATAGGAAGCCTCACGTCCTTGCC 85
******************************************************** **
consensus_5124#0 GCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGCAG-CTACAACA 357
consensus_5124#1 GCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGCAGGCTACAACA 355
consensus_5124#2 GCGTGGCTCAAGAGGTGACGTGAACGATGTCTTTTCCAAACGACGCAGTCAGCTACAACA 145
************************************************ ********
consensus_5124#0 TTGAGTTCGT-ACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAG-GTGGATCTACTGAA 415
consensus_5124#1 TTGAGTTCGTTACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGAGTGGATCTACTGAA 415
consensus_5124#2 TTGAGTTCGT-ACGCGCTCAAAAGGGTGGTGGTAGTGCTTCGAAGAGTGGATCTACTGAA 204
********** ********************************** **************
consensus_5124#0 GTCAGCGGT-CGACATT-AACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGT--A 471
consensus_5124#1 GTCAGCGGTACGACATTTAACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGTCAA 475
consensus_5124#2 GTCAGCGGT-CGACATT-AACCACAAGGCATCCCATCAACATCTGCGCAAGGAAGGT--A 260
********* ******* *************************************** *
consensus_5124#0 AAGCGTCCGATCAGTCACTC-AACTC---GAAACGTGCC-GACAGTGCACCACGTTTGAA 526
consensus_5124#1 AGGCGTCCGATCAGTCACTCGAACTCCGGAAAACGTGCCCGACAAGGTGGCAACCACGG- 534
consensus_5124#2 AAGCGTCCGATCAGTCACTC-AACTC---GAAACGTGCC-GACAGTGCACCACGTTTGAA 315
* ****************** ***** ********* **** * ** *
consensus_5124#0 TCATTCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGAAACTGAACA 586
consensus_5124#1 ---TTTNGGAA----CTCAAATTCGGANGGAAGCATTCTCGGCAAAGCGGATCCCTAAGG 587
consensus_5124#2 TCAATCGAAGAACATCTCGCAACCGATCCTAAGTGCGGTAGTGGACGAGGACCTGCCGTC 375
* * *** * ** *** * * * * ***
consensus_5124#0 ACGCGACTCGATCACCGAGGGAGAGGAAGAGAACTATAAGCTAGAGCTCAGCAAGAAAGC 646
consensus_5124#1 TTGCGGANTTA------------------------------------------------- 598
consensus_5124#2 GTCTGTGCTGTCGCGCCACAGGAAAAAGCACCATCAGAGCGGCATTCTGGTCGTGAAGGC 435
*
consensus_5124#0 TTCCCGTGGCCATGTGCTCAATGACATCCCCGAAAAGACGGTGGAAGCGGTAGACACCGC 706
consensus_5124#1 ------------------------------------------------------------
consensus_5124#2 CTGCAGCCAGGACGGGGATTTGGATCTGCGCAATTAT----------------------- 472
consensus_5124#0 TGCAGCTACGCCACCGGTGACTCCGGTGGTCGAGGGCACGGACACAACTACCACCACTAC 766
consensus_5124#1 ------------------------------------------------------------
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 CACCACCACCACCACCACTCCGAGCATAGCAGATGATCACACGACAGCCAATGCTTCTTG 826
consensus_5124#1 ------------------------------------------------------------
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 ATAAAGGGACGATGGATGTAGTTATGAGCGTGAAGAACGGATTGTGCTGCAAAGGTGCTT 886
consensus_5124#1 ------------------------------------------------------------
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 GTGCATTTCGATAGCAGCAGAGATGCTTTCTAGCATCTTTTGCTTTGCCTATCATGGGGC 946
consensus_5124#1 ------------------------------------------------------------
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 CGCACGCTATTGATTGCCGATGCAGTGAATCTCCATTCCCAATTAGTATTGTTTGTGCGT 1006
consensus_5124#1 ------------------------------------------------------------
consensus_5124#2 ------------------------------------------------------------
consensus_5124#0 TCCTCGAGATTATGAATATTTAGCGCAAATCAGCGC 1042
consensus_5124#1 ------------------------------------
consensus_5124#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||