These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [ATCGCGCAGCGTAACTCATCTGCCTCACCGAACGCGTCAGCACAACCGAGCTCGAAACATCACCACCGACAGCAGGACCACAGTCCGGACGCGAAACGAAGGATACACAAGTGTCAATTTCTCGGCTGCAAAAAGGTCTACACGAAAAGCTCCCATCTGAAGGCGCACCAGCGAACGCATACAGGAGAAAAACCGTACAAGTGTTCGTGGGAGGGTTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCGGCGCCAAACCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATCTTGCGTTGCACATGAAACGGCACGCCTAAGGCATTCGTCTCCAAAACCTTCCACTGCCGTTCGCTCCCGCGAGCAGCACGACGGCTCCAGCAGGCGAAGACACAACGAGCAAGAGAGCTTTACACCAACGCAGAAGCGCACGGTAGGAGACAGGCAGGAGAGGAGAGTTTTTAAAAGCACCCCGAATTGGAAACAAACGTGTGACGATAGGCAAAACAAAACTGTGAATAGTAAATGTAGAAAATCGAAACTGGGAAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCATGGAAAACCTCCGCACGCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCACACTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAATTTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCTGGTTATCCGGGTATCTATCTCCCTAGCGCCGATCAGCGTTGCCAGCGTTTCGTTTATGGACGTCCAGTTGAGCTGGATAGTGTTTTGAGTACGAGGGAGAAGAAAAAAAAGAAACAGTTTTTACTGATTGAAAACCCAAACAA] [+] EMBL BX621536 [ATCGCGCAGCGTAACTCATCTGCCTCACCGAACGCGTCAGCACAACCGAGCTCGAAACATCACCACCGACAGCAGGACCACAGTCCGGACGCGAAACGAAGGATACACAAGTGTCAATTTCTCGGCTGCAAAAAGGTCTACACGAAAAGCTCCCATCTGAAGGCGCACCAGCGAACGCATACAGGAGAAAAACCGTACAAGTGTTCGTGGGAGGGTTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCGGCGCCAAACCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATCTTGCGTTGCACATGAAACGGCACGCCTAAGGCATTCGTCTCCAAAACCTTCCACTGCCGTTCGCTCCCGCGAGCAGCACGACGGCTCCAGCAGGCGAAGACACAACGAGCAAGAGAGCTTTACACCAACGCAGAAGCGCACGGTAGGAGACAGGCAGGAGAGGAGAGTTTTTAAAAGCACCCCGAATTGGAAACAAACGTGTGACGATAGGCAAAACAAAACTGTGAATAGTAAATGTAGAAAATCGAAACTGGGAAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCATGGAAAACCTCCGCACGCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCACACTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAATTTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCTGGTTATCCGGGTATCTATCTCCCTAGCGCCGATCAGCGTTGCCAG ] [+] EMBL BM596616 [ ccGCTGACGCGCCACTACCGGAAGCACACCGGCGCCAAACCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATCTTGCGTTGCACATGAAACGGCACGCTTAAGGCATTCGTCTACAAAACCTTCCACTGCCGTTCGCTCCGGCGAGTGGCACGAAGGCTCTAGCAGGCGAAGACACAACGAGCAAGAGAGCTTTACACCAACGCAGAGGCGCACGGTAGGAGGCAAGCAGGAGAGGAGAGTTTTTAAAAGCACCCCGAATTGGAAACAAAAGTGTGACGATAGGCAAAACTAAACTGTGAATAGTAAATGTAGAAAATCGAAACTGGGAAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCATGGAAAACCTCCGCACGCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCACATTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAATTTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCCGTTTATCCGGTTATCTATCTCCCTAGCGCCGATCAGCGTTGCTTTCGTTTCGTTTATGGACGTCCAGTTGAGCTGGATAGTGTTTTGAGTACGAGGGAGAAGAAAAAAAAGAAACAGTTTTTACTGATTGAAAACCCAAACAA] consensusID : consensus_5131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 882 fasta sequence [CCCAGGGTTAAAACGTGATGCACGTGTNTCACCTCATCATAACGNTNACCAACAACAACAAAATCACCGCTAAAGCTTTAGAGCCAACCTACTAAGCTTGCATTACCGTAGAGAAAAACCGTACAAGTGTTCGTGGGAGGGCTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCTGGCGCCAAGCCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATACTTGCGCTGCACATGAAACGGAACGCCTAAGGCATTCGTACTCCAAAACCTTCCACTGCCGTACGCTACCGGAGAGTAGGAACGAAGGCCCCTGACAGACGACAGACAACAACGAGCAAGAGAGCTATTAACACCAACGCACGAGGCGCCGGTAGGGGGGAAAGCACGAGAGGAGCAGTAATTTCAACGAGCACCCCGCAATTGGCAACAACAAGTGTGACGCATAAGCGCNNAAACTACACNCTGTGACACTAGCTAANATGTCCAACCAATCGACNACTGGGAAANCAATGNAACACCACCTACCTCACCATTGGCTNTNTGAAACTGCNANAGCGGCAGCATTTCCACTCCGGACTCCCGAACTCGGGGAAAAAAACGCTGCCTTAATAAAAATTGCCCCAAACACGCTGCACNTCCACACCCACCCTTGGNAAAGACCNTACCACTAGCACGGCAAAAAATCNAAATCCTCNCNGCCGCTTATACCCCCAAACTATACCACCCCCCCNATCCCATTCACACTCCAACCCCACTAAAATCGCTAAAACNCCGCATCNCCACACCNATCCACTCACNCACANACANATATCCNGCNCTCAATACTATTCTCCCCCTTAACAC] [+] EMBL AL693396 [CCCAGGGTTAAAACGTGATGCACGTGTNTCACCTCATCATAACGNTNACCAACAACAACAAAATCACCGCTAAAGCTTTAGAGCCAACCTACTAAGCTTGCATTACCGTAGAGAAAAACCGTACAAGTGTTCGTGGGAGGGCTGTGAATGGCGCTTCGCCCGAAGCGACGAGCTGACGCGCCACTACCGGAAGCACACCTGGCGCCAAGCCCTTCAAGTGCCGGCACTGCGATCGTTGCTTTTCCCGCTCCGATCATACTTGCGCTGCACATGAAACGGAACGCCTAAGGCATTCGTACTCCAAAACCTTCCACTGCCGTACGCTACCGGAGAGTAGGAACGAAGGCCCCTGACAGACGACAGACAACAACGAGCAAGAGAGCTATTAACACCAACGCACGAGGCGCCGGTAGGGGGGAAAGCACGAGAGGAGCAGTAATTTCAACGAGCACCCCGCAATTGGCAACAACAAGTGTGACGCATAAGCGCNNAAACTACACNCTGTGACACTAGCTAANATGTCCAACCAATCGACNACTGGGAAANCAATGNAACACCACCTACCTCACCATTGGCTNTNTGAAACTGCNANAGCGGCAGCATTTCCACTCCGGACTCCCGAACTCGGGGAAAAAAACGCTGCCTTAATAAAAATTGCCCCAAACACGCTGCACNTCCACACCCACCCTTGGNAAAGACCNTACCACTAGCACGGCAAAAAATCNAAATCCTCNCNGCCGCTTATACCCCCAAACTATACCACCCCCCCNATCCCATTCACACTCCAACCCCACTAAAATCGCTAAAACNCCGCATCNCCACACCNATCCACTCACNCACANACANATATCCNGCNCTCAATACTATTCTCCCCCTTAACAC] consensusID : consensus_5131#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGGAGTTTTTAAAAGCACCCCGAATTGGAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCGGAGATTTTCCACTCCGCACCCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCAACACTGTAGGGGCAGGCAGGGAAATCTATCGTTGGCTTACCCAATTTCACCCCATCATAATCACCTTAATCGTAAATCGTTCACCTTCTTCTCCGTTTATCCGGTTATCTCCATAGCGCCGATCAGCGTTGCTAGACGCTGTCTTTCGTTTCGTTTATAGACGTCCAGTTGAGCTGAATAGTGTGTTGAGCACGAGAGAGAGAGATAAAAAAGAAACAGTTTTGTACTGATTGAAAACAAAACAAAAAGCGCCATATTGAAGCATTGAAACAGTATAGCAAACACACAAACAGAAACGGAGAACATTTTGTAGCAGAAGAAAAACCGCGCCATTTGTGCTGTTATGTGTTTCCAGAAAACCAACGTCCAAACTGTATGCTGTTGTACTCGGTAAGCCAACAGACTCACATTTATAAACATAAGCAAAATGTGCAAAATGTATTGATTTGTTTAAGTAGCTTAAGTTTCAAAGTTCGGTTTAAGATACCCATGTTTTAAGAATGTGTTCAGTA] [+] EMBL BM638675 [CCGGAGTTTTTAAAAGCACCCCGAATTGGAAACAATGAACACACTAATCACCATTGGCTTTGAAACTGCGAAGCGGAGATTTTCCACTCCGCACCCCGACTCGGGAAAAAGGCTATAAATGCCAAACGTGCATCAACACTGTAGGGGCAGGCAGGGAAATCTATCGTTGGCTTACCCAATTTCACCCCATCATAATCACCTTAATCGTAAATCGTTCACCTTCTTCTCCGTTTATCCGGTTATCTCCATAGCGCCGATCAGCGTTGCTAGACGCTGTCTTTCGTTTCGTTTATAGACGTCCAGTTGAGCTGAATAGTGTGTTGAGCACGAGAGAGAGAGATAAAAAAGAAACAGTTTTGTACTGATTGAAAACAAAACAAAAAGCGCCATATTGAAGCATTGAAACAGTATAGCAAACACACAAACAGAAACGGAGAACATTTTGTAGCAGAAGAAAAACCGCGCCATTTGTGCTGTTATGTGTTTCCAGAAAACCAACGTCCAAACTGTATGCTGTTGTACTCGGTAAGCCAACAGACTCACATTTATAAACATAAGCAAAATGTGCAAAATGTATTGATTTGTTTAAGTAGCTTAAGTTTCAAAGTTCGGTTTAAGATACCCATGTTTTAAGAATGTGTTCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5131#0 ATCGCGCAGCGTAACTCATCTGCCTCACCGAACGCGTCAGCACAACCGAGCTCGAAACAT 60 consensus_5131#2 ------------------------------------------------------------ consensus_5131#1 ------------------------------------------------------------ consensus_5131#0 CACCACCGACAGCAGGACCACAGTCCGGACGCGAAACGAAGGATACACAAGTGTCAATTT 120 consensus_5131#2 --CCGGAGTTTTTAAAAGCAC--CCCGAATTGGAAACAATGAACACACTAATCACCATT- 55 consensus_5131#1 ---CCCAGGGTTAAAACGTGATGCACGTGTNTCACCTCATCATAACGNTNACCAACAAC- 56 * * * ** * * ** * consensus_5131#0 CTCGGCTGCAAAAAGGTCTACAC---GAAAAGCTCCCATCTGAAGGCGCACCAGCGAACG 177 consensus_5131#2 ---GGCTTTGAAACTG-CGAAGC---GGAGATTTTCCACTC-----CGCACC------CC 97 consensus_5131#1 ---AACAAAATCACCGCTAAAGCTTTAGAGCCAACCTACTA-AGCTTGCATT-------- 104 * * * * * * * * *** consensus_5131#0 CATACAGGAGAAAAACCGTACAAGTGTTCGTGGGAGGGTTGTGAATGGCGCTTCGCCCGA 237 consensus_5131#2 GACTCGGGAAAAAGGC--TATAAATGCC----AAACGTGCATCAACACTGTAGGGGCAGG 151 consensus_5131#1 -ACCGTAGAGAAAAACCGTACAAGTGTTCGTGGGAGGGCTGTGAATGGCGCTTCGCCCGA 163 * ** *** * ** ** ** * * * ** * * * * consensus_5131#0 AGCGACGAGCTGACGCGCCACTACCGGAAGC-ACACCGGCGCCAAACCCTTCAAGTGCCG 296 consensus_5131#2 CAGGGAAATCTATCGTTGGCTTACCCAATTT-CACCCCATCATAATCACCTTAATCGTAA 210 consensus_5131#1 AGCGACGAGCTGACGCGCCACTACCGGAAGCACACCTGGCGCCAAGCCCTTCAAGTGCCG 223 * * ** ** **** * * ** * * * ** * consensus_5131#0 GCACTGCGATCGTTGCTTTTCCCGCTCCGATCAT-CTTGCGTTGCACATGAAACGGCACG 355 consensus_5131#2 ATCGTTC-ACCTTCTTCTCCGTTTATCCGGTTAT-CTC-CATAGCGC--CGATCAGCGTT 265 consensus_5131#1 GCACTGCGATCGTTGCTTTTCCCGCTCCGATCATACTTGCGCTGCACATGAAACGGAACG 283 * * * * * * **** * ** ** * ** * * * * consensus_5131#0 CCTAAGGCATTCGT-CTCCAAAACCTTCCACTGCCGTTCGCTCCCGC-GAGCAGCA-CGA 412 consensus_5131#2 GCTA-GACGCT-GT-CTTTCGTTTCGTTTATAGACGTCCAGTTGAGCTGAATAGTG-TGT 321 consensus_5131#1 CCTAAGGCATTCGTACTCCAAAACCTTCCACTGCCGTACGCTACCGGAGAGTAGGAACGA 343 *** * * * ** ** * * * * *** * * * ** ** * consensus_5131#0 CGGCTCC-AGCAGG-CGAAGACAC-AACGAGCAAGAGAGCTTT--ACACCAACGCAGAAG 467 consensus_5131#2 TGAGCAC-GAGAGA-GAGAGATAA-AAAAG---AAACAGTTTT--GTACTGATTGAAAAC 373 consensus_5131#1 AGGCCCCTGACAGACGACAGACAACAACGAGCAAGAGAGCTATTAACACCAACGCACGAG 403 * * ** *** * ** * * ** * * ** * * * consensus_5131#0 CGCACGGTAGGAGACAGGCAG-GAGAGGAGAGTTTTT----AAAAGCACCCCG-AATTGG 521 consensus_5131#2 AAAACAAAAAGCGCCATATTG-AAGCATTGAAACAGT----ATAGCAAACACACAAACAG 428 consensus_5131#1 GCGCCGGTAGGGGGGAAAGCACGAGAGGAGCAGTAATTTCAACGAGCACCCCGCAATTGG 463 * * * * * ** * * * * * * ** * consensus_5131#0 AAACAAACGTGTGACGATAGGCAAAACAAAACTGTGAATAGT---AAATGTAGAAAATC- 577 consensus_5131#2 AAACGGAGAACATTTTGTAGCAGAAGAAAAACCGCG--CCAT---TTGTGCTGTTATGT- 482 consensus_5131#1 CAACAACAAGTGTGACGCATAAGCGCNNAAACTACACNCTGTGACACTAGCTAANATGTC 523 *** * **** * * * consensus_5131#0 ----------GAAACTGGGAAAACAATGA----ACACACTAATCACCATTGGCTTTG-AA 622 consensus_5131#2 ----------GTTTCCAGAAAACCAACGT----CCAAACTGTATGCTGTTGTACTCG-GT 527 consensus_5131#1 CAACCAATCGACNACTGGGAAANCAATGNAACACCACCTACCTCACCATTGGCTNTNTGA 583 * * *** *** * ** * *** consensus_5131#0 ACTGCGAAGCATGGAAA-ACCTCCGCAC-GCCGACTCGGGAAAAAGGCTATAAATGCCA- 679 consensus_5131#2 A------AGC-CAACAG-ACTCACATTT-ATAAACATAAGCAAAATGTGCAAAATG---- 574 consensus_5131#1 AACTGCNANAGCGGCAGCATTTCCACTCCGGACTCCCGAACTCGGGGAAAAAAACGCTGC 643 * * * * * * * *** * consensus_5131#0 ---AACGTGCATCACACTGTAGGGGCACAGGCAGGGAAATCGCTCTTTGGCTTACCCAAT 736 consensus_5131#2 -----TATTGATT-TGTTTAAGTAGCTTAAGTTTCAAAGTT-CGGTTTAAGATACCCATG 627 consensus_5131#1 CTTAATAAAAATTGCCCCAAACACGCTGCACNTCCACACCCACCCTTGGNAAAGACCNTA 703 ** * ** * * ** ** consensus_5131#0 TTCACCCCATCATAATCACCATAATCGTAAATCGTTCACCTTCTTCTCTGGTTATCCGGG 796 consensus_5131#2 TTTTAAGAAT-GTGTTCAGTA--------------------------------------- 647 consensus_5131#1 CCACTAGCACGGCAAAAAATCNAAATCCTCNCNGCCGCTTATACCCCCAAACTATACCAC 763 * * consensus_5131#0 TATCTATCTCCCTAGCGCCGATCAGCGTTGCCAGCGTTTCGTTTATGGACGTCCAGTTGA 856 consensus_5131#2 ------------------------------------------------------------ consensus_5131#1 CCCCCCNATCCCATTCACACTCCAACCCCACTAAAATCGCTAAAACNCCGCATCNCCACA 823 consensus_5131#0 GCTGGATAGTGTTTTGAGTACGAGGGAGAAGAAAAAAAAGAAACAGTTTTTACTGATTGA 916 consensus_5131#2 ------------------------------------------------------------ consensus_5131#1 CCNATCCACTCACNCACANACANATATCCNGCNCTCAATACTATTCTCCCCCTTAACAC- 882 consensus_5131#0 AAACCCAAACAA 928 consensus_5131#2 ------------ consensus_5131#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||