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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1411 fasta sequence
[CCGCGGACGCGTGGGCGCGGAATAATAATAGTGAATCTGTTTCCAAAGGGGGTGGCGGCGGAGCGAAGGATCGTAACAAAGAGCAACAGCAGAAGCAACAGCAACACAGTAAATCCAATGGACAAAGCTCAGCCGCTACACAATCTTCTCCCACAAACAACAATAACATCCCTTCGTCGTTAAATAGTTCTTTCCCTGTGTTAGGCAGTTCTAACAGTGTTCATTTTGCACTAGCAGCCGGTCCCAAACGTACGCCACCTGGATTTGAAAACGTAAATTTAAAACGAATGCCCGGTCCTCCACCTGGCTTTGGGAATGTCACATTAAATTCCGTTGCAAGGAATGCGAACAACATGACTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTCTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCGAACCATTTCACAGATGTTCCGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACGAAAACAATAGACCGAAATCTTTCGGCAAAGGGAAAGCTTCTAATTCCTCGAAACTAGAGGTTTGTCAAGTTTGTAAGCAAGTGCTCATCCAAGACGATTTGACCGAACACTATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGAAAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTCTACATTGGCGTATGTTGGNCAACTTGTAGTACCGCCCGTAGATTAAGCTGTGCATAGAAAAGATAAATGCGCAAACGGATATTTGTTATAAGGCATGGAAATACAAAAATGTATATTCAGCATCGCTTTGTTCAATATGAACTAGCTTCAAACCATACAAAAGGTGCTTATGCTATAAATTTCCAGAATGAAATGCTTTTTGTTATTTTTTTAAATACCGATCTGGGTACTACAAGTAAACAGTTATTGGTTAACACATATTTACGAGACACAGTGAAATTGCTTAGCTTGTGCTAGAAAGAGTTACACAAATAAACTCCAATTACGATTACTTGCTACGGTCGAATGGTTCGTACAAAACACACTTAAAATGTCGATTTGTAATACAGAGATAGCATTGCAGGATAAAAAAAGTACTGAAAAGTGTTGGCTTTGTTTTGTAGGACGGACGAACCAAAATATCGAATTTGTACNAATGTTGCTGAAAATATCATGTACATAATAATAAAAGCTGCAATATCTATTGAAAT]
[+] EMBL BM616595 [CCGCGGACGCGTGGGCGCGGAATAATAATAGTGAATCTGTTTCCAAAGGGGGTGGCGGCGGAGCGAAGGATCGTAACAAAGAGCAACAGCAGAAGCAACAGCAACACAGTAAATCCAATGGACAAAGCTCAGCCGCTACACAATCTTCTCCCACAAACAACAATAACATCCCTTCGTCGTTAAATAGTTCTTTCCCTGTGTTAGGCAGTTCTAACAGTGTTCATTTTGCACTAGCAGCCGGTCCCAAACGTACGCCACCTGGATTTGAAAACGTAAATTTAAAACGAATGCCCGGTCCTCCACCTGGCTTTGGGAATGTCACATTAAATTCCGTTGCAAGGAATGCGAACAACATGACTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTCTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCGAACCATTTCACAGATGTTCCGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACG ]
[+] EMBL BX627933 [ CCGTTGCAAGGAATGCGAACAACATGACTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTCTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCGAACCATTTCACAGATGTTCCGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACGAAAACAATAGACCGAAATCTTTCGGCAAAGGGAAAGCTTCTAATTCCTCGAAACTAGAGGTTTGTCAAGTTTGTAAGCAAGTGCTCATCCAAGACGATTTGACCGAACACTATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGAAAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTCTACATTGGCGTATGTTGGNCAACTTGTAGTACCGCCCGTAGATTAAGCTGTGCAT ]
[+] EMBL BX623112 [ GTTTCCCTGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACGAAAACAATAGACCGAAATCTTTCGGCAAAGGGAAAGCTTCTAATTCCTCGAAACTAGAGGTTTGTCAAGTTTGTAAGCAAGTGCTCATCCAAGACGATTTGACCGAACACTATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGAAAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTCTACATTGGCGTATGTTGGCCAACTTGTAATACCGCCCGTAGATTAAGCTGTGCATAGAAAAGATAAATGCGCAAACGGATATTTGTTATAAGGCATGGAAATACAAAAATGTATATTCAGCATCGCTTTGTTCAATATGAACTAGCTTCAAACCATACAAAAGGTGCTTATGCTATAAATTTCCAGAATGAAATGCTTTTTGTTATTTTTTTAAATACCGATCTGGGTACTACAAGTAAACAGTTATTGGTTAACACATATTTACGAGACACAGTGAAATTGCTTAGCTTGTGCTAGAAAGAGTTACACAAATAAACTCCAATTACGATTACTTGCTACGGTCGAATGGTTCGTACAAAACACACTTAAAATGTCGATTTGTAATACAGAGATAGCATTGCAGGATAAAAAAAGTACTGAAAAGTGTTGGCTTTGTTTTGTAGGACGGACGAACCAAAATATCGAATTTGTACNAATGTTGCTGAAAATATCATGTACATAATAATAAAAGCTGCAATATCTATTGAAAT]
consensusID : consensus_5143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1409 fasta sequence
[TGCNGAGGCAGAATTGCCCGAGGTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTACTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCTGAACCATTTCACAGATGTTCCTGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCAAACCATCAGCAAACAACCAGGAACTTTATNNNGGTATACTGCAAGACGANAACAATAGACCGAAACTCTTATCGGCAACAGGGAAAAGCTTCTAATTCCTCGAAACTAGGAGGGTAATGTACAAGTATGTAAGGCAAGTGCTCCATCCCAAGACGACTCTGACCGAACACCTATCAGGACCACCATNGATCATGGGACAANACCAATTTTTNCCAAAAGCTTCGGAANAAGTACGATTGACCGGGCACACACAGGTCCGGGCTNCCATTCTGCACTGGCACACGCAACATTAAATCCTAATGGTCANAACGGTTCTACGCATAATGGAGCGTAATGTACGGGACCAACATTGGTAAGTACCCGGCACCCCGGNTAAGGCAATTCAANAGCCCTCTGGCTACGCCCNTTAAGCACNNACACAGCATTCAAACAACTTGGCCGCCAAAAAACCGGGACATNANTACCCGGGNNCACACTCACANCAGGGACAANTTGNGCCACAACTGTAAACCCAACAAGACATGTAACTTAACTAATCCAAGCCANCATCTCCGAGCNGCAAACACANGGGACAAGACNCAGCAAGAACNNACNTGGNGAGAAGCACCCCNACAAGGCCCGCTNATCCACCAACAACACAACNCCCAACGCTANAACCCCCACAACCCNCAACAGGGCGANCCAGCCCACCAACNAGGGGCNCACAGAACAACGACACCNACTACNNCACCCCACACCAACCACANTGGCACACAACACTGGGCCCACACNCACACAGGGACCACCAACCCCCCCNCCCACACACCACAAAACCCCCCCGNGGNCAAAAACCCTCCCAGNGGGGCATANANAAAACCCCTCAAACACANACCAGANACACGTTCACTAACCACAACAACAAACGANATCACGACNAACCTCCAGNGCGGCGCACNCAAAACCCANCCACAGCCNACAGTAACAATAATAAGCTNGAAGNCAGGNCAGCNGGCAAACACCACNCACACNNAGCATCAGGACANNCCAAACCGTATCCTGGCGCCAACTCCCCAAAANCAACGNGCCCGAGGNGNCCGNCCATACAAACAANCAAACCAGAGGAAACGAGTACAAAGCAAN]
[+] EMBL AL693905 [TGCNGAGGCAGAATTGCCCGAGGTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTACTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCTGAACCATTTCACAGATGTTCCTGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCAAACCATCAGCAAACAACCAGGAACTTTATNNNGGTATACTGCAAGACGANAACAATAGACCGAAACTCTTATCGGCAACAGGGAAAAGCTTCTAATTCCTCGAAACTAGGAGGGTAATGTACAAGTATGTAAGGCAAGTGCTCCATCCCAAGACGACTCTGACCGAACACCTATCAGGACCACCATNGATCATGGGACAANACCAATTTTTNCCAAAAGCTTCGGAANAAGTACGATTGACCGGGCACACACAGGTCCGGGCTNCCATTCTGCACTGGCACACGCAACATTAAATCCTAATGGTCANAACGGTTCTACGCATAATGGAGCGTAATGTACGGGACCAACATTGGTAAGTACCCGGCACCCCGGNTAAGGCAATTCAANAGCCCTCTGGCTACGCCCNTTAAGCACNNACACAGCATTCAAACAACTTGGCCGCCAAAAAACCGGGACATNANTACCCGGGNNCACACTCACANCAGGGACAANTTGNGCCACAACTGTAAACCCAACAAGACATGTAACTTAACTAATCCAAGCCANCATCTCCGAGCNGCAAACACANGGGACAAGACNCAGCAAGAACNNACNTGGNGAGAAGCACCCCNACAAGGCCCGCTNATCCACCAACAACACAACNCCCAACGCTANAACCCCCACAACCCNCAACAGGGCGANCCAGCCCACCAACNAGGGGCNCACAGAACAACGACACCNACTACNNCACCCCACACCAACCACANTGGCACACAACACTGGGCCCACACNCACACAGGGACCACCAACCCCCCCNCCCACACACCACAAAACCCCCCCGNGGNCAAAAACCCTCCCAGNGGGGCATANANAAAACCCCTCAAACACANACCAGANACACGTTCACTAACCACAACAACAAACGANATCACGACNAACCTCCAGNGCGGCGCACNCAAAACCCANCCACAGCCNACAGTAACAATAATAAGCTNGAAGNCAGGNCAGCNGGCAAACACCACNCACACNNAGCATCAGGACANNCCAAACCGTATCCTGGCGCCAACTCCCCAAAANCAACGNGCCCGAGGNGNCCGNCCATACAAACAANCAAACCAGAGGAAACGAGTACAAAGCAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5143#0 CCGCGGACGCGTGGGCGCGGAATAATAATAGTGAATCTGTTTCCAAAGGGGGTGGCGGCG 60
consensus_5143#1 ------------------------------------------------------------
consensus_5143#0 GAGCGAAGGATCGTAACAAAGAGCAACAGCAGAAGCAACAGCAACACAGTAAATCCAATG 120
consensus_5143#1 ------------------------------------------------------------
consensus_5143#0 GACAAAGCTCAGCCGCTACACAATCTTCTCCCACAAACAACAATAACATCCCTTCGTCGT 180
consensus_5143#1 ------------------------------------------------------------
consensus_5143#0 TAAATAGTTCTTTCCCTGTGTTAGGCAGTTCTAACAGTGTTCATTTTGCACTAGCAGCCG 240
consensus_5143#1 ------------------------------------------------------------
consensus_5143#0 GTCCCAAACGTACGCCACCTGGATTTGAAAACGTAAATTTAAAACGAATGCCCGGTCCTC 300
consensus_5143#1 ------------------------------------------------------------
consensus_5143#0 CACCTGGCTTTGGGAATGTCACATTAAATTCCGTTGCAAGGAATGCGAACAACATGAC-T 359
consensus_5143#1 ------------------------------------TGCNGAGGCAGAATTGCCCGAGGT 24
** *** * ** *
consensus_5143#0 TTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGT-CTCTCC 418
consensus_5143#1 TTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTACTCTCC 84
***************************************************** ******
consensus_5143#0 TTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAG 478
consensus_5143#1 TTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAG 144
************************************************************
consensus_5143#0 TCAAGACGCGTTAATGGAGTTCC-GAACCATTTCACAGATGTTCC-GTGATGGGCAATAC 536
consensus_5143#1 TCAAGACGCGTTAATGGAGTTCCTGAACCATTTCACAGATGTTCCTGTGATGGGCAATAC 204
*********************** ********************* **************
consensus_5143#0 GAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATT 596
consensus_5143#1 GAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATT 264
************************************************************
consensus_5143#0 TTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAAC-AGGAACTTTATTTGG- 654
consensus_5143#1 TTTCCTGAACTGATCGCGTTACTGCAAACCATCAGCAAACAACCAGGAACTTTATNNNGG 324
************************* ***************** *********** *
consensus_5143#0 TATACTGCCAAGACGAAAACAATAGACCGAAATCTTT--CGGCAA--AGGGAAAGCTTCT 710
consensus_5143#1 TATACTGC-AAGACGANAACAATAGACCGAAACTCTTATCGGCAACAGGGAAAAGCTTCT 383
******** ******* *************** ** ****** ** *********
consensus_5143#0 AATTCCTCGAAACTAG-AGGTTTGT---CAAGTTTGTAAG-CAAGTGCTCA--TCCAAGA 763
consensus_5143#1 AATTCCTCGAAACTAGGAGGGTAATGTACAAGTATGTAAGGCAAGTGCTCCATCCCAAGA 443
**************** *** * * ***** ****** ********* ******
consensus_5143#0 CGATT-TGACCGAACAC-TATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGA 821
consensus_5143#1 CGACTCTGACCGAACACCTATCAGGACCACCATNGATCATGGGACAANACCAATTTTTNC 503
*** * *********** ****** ** ** * * * ** *
consensus_5143#0 AAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTC 881
consensus_5143#1 CAAA-AGCTTCGGAANAAGTACGATTGACCGGGCACACACA--GGTCCGGGCTNCCATTC 560
** ** * * * **** * * * * * * ** * ***
consensus_5143#0 TACATTGGCGTATGTTGGNCAACTTGTAGTACCGCCCGTAGATTAAGCTGTGCATAGAAA 941
consensus_5143#1 TGCACTGGCACACGC--AACATTAAATCCTAATGGTCANA-ACGGTTCTACGCATAATGG 617
* ** **** * * ** * ** * * * * ** *****
consensus_5143#0 AGATAAATGCGCAA-ACGGATATTTGTTATAAGGCATGGAAATACAAAAATGTATATTCA 1000
consensus_5143#1 AGCGTAATGTACGGGACCAACATTGGTAA--GTACCCGGCACCCCGGNTAAGGCAATTCA 675
** **** * ** * *** ** * * ** * * * * *****
consensus_5143#0 GCATCGCTTTGTTCAA---TATGAACTAGCTTCAAACCATACAAAAGGTGCTTATGCTAT 1057
consensus_5143#1 ANAGCCCTCTGGCTACGCCCNTTAAGCACNNACACAGCATTCAAACAACTTGGCCGCCAA 735
* * ** ** * * ** * ** * *** **** ** *
consensus_5143#0 AAATTTCCAGAATGAA-ATGCTTTTTGTTATTTTTTTAAATACCGATCTGGGTACTACAA 1116
consensus_5143#1 AAAACCGGGACATNANTACCCGGGNNCACACTCACANCAGGGACAANTTGNG--CCACAA 793
*** ** * * * * * * * * ** * * ****
consensus_5143#0 GTAAACAGTTATTGGTTAACACATATTTACGAGACACAGTGAA-ATTGCTTAGCT----- 1170
consensus_5143#1 CTGTAAACCCAACAAGACATGTAACTTAACTAATCCAAGCCANCATCTCCGAGCNGCAAA 853
* * * * * * ** ** * * ** * ** * ***
consensus_5143#0 --TGTGCTAGAAAGAGTTACACAAATAAACTCCAATTACGATTACTTGCTACGGTCGAAT 1228
consensus_5143#1 CACANGGGACAAGACNCAGCAAGAACNNACNTGGNGAGAAGCACCCCNACAAGGCCCGCT 913
* * ** ** ** ** * * ** * *
consensus_5143#0 GGTTCGT-----ACAAAACACAC----TTAAAATGTC---GATTTGTAATACAGAGATAG 1276
consensus_5143#1 NATCCACCAACAACACAACNCCCAACGCTANAACCCCCACAACCCNCAACAGGGCGANCC 973
* * *** *** * * ** ** * * ** * * **
consensus_5143#0 CATTGCAGGATAAAAAAAGTACTGAAAAGTGTTGGCTTTGTTTTGTAGGACGGACGAACC 1336
consensus_5143#1 AGCCCACCAACNAGGGGCNCACAGAACAACGACA-CCNACTACNNCACCCCACACCAACC 1032
* * ** *** * * * * * * ** ****
consensus_5143#0 AAAATATCGAAT----TTGTACNAATGTTGCTGAAAATATCATGTACATAATAAT--AAA 1390
consensus_5143#1 ACANTGGCACACAACACTGGGCCCACACNCACACAGGGACCACCAACCCCCCCNCCCACA 1092
* * * * * ** * * * * ** ** * *
consensus_5143#0 AGCTGCAATATCTATT-GAAAT-------------------------------------- 1411
consensus_5143#1 CACCACAAAACCCCCCCGNGGNCAAAAACCCTCCCAGNGGGGCATANANAAAACCCCTCA 1152
* *** * * *
consensus_5143#0 ------------------------------------------------------------
consensus_5143#1 AACACANACCAGANACACGTTCACTAACCACAACAACAAACGANATCACGACNAACCTCC 1212
consensus_5143#0 ------------------------------------------------------------
consensus_5143#1 AGNGCGGCGCACNCAAAACCCANCCACAGCCNACAGTAACAATAATAAGCTNGAAGNCAG 1272
consensus_5143#0 ------------------------------------------------------------
consensus_5143#1 GNCAGCNGGCAAACACCACNCACACNNAGCATCAGGACANNCCAAACCGTATCCTGGCGC 1332
consensus_5143#0 ------------------------------------------------------------
consensus_5143#1 CAACTCCCCAAAANCAACGNGCCCGAGGNGNCCGNCCATACAAACAANCAAACCAGAGGA 1392
consensus_5143#0 -----------------
consensus_5143#1 AACGAGTACAAAGCAAN 1409
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||