These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1411 fasta sequence [CCGCGGACGCGTGGGCGCGGAATAATAATAGTGAATCTGTTTCCAAAGGGGGTGGCGGCGGAGCGAAGGATCGTAACAAAGAGCAACAGCAGAAGCAACAGCAACACAGTAAATCCAATGGACAAAGCTCAGCCGCTACACAATCTTCTCCCACAAACAACAATAACATCCCTTCGTCGTTAAATAGTTCTTTCCCTGTGTTAGGCAGTTCTAACAGTGTTCATTTTGCACTAGCAGCCGGTCCCAAACGTACGCCACCTGGATTTGAAAACGTAAATTTAAAACGAATGCCCGGTCCTCCACCTGGCTTTGGGAATGTCACATTAAATTCCGTTGCAAGGAATGCGAACAACATGACTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTCTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCGAACCATTTCACAGATGTTCCGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACGAAAACAATAGACCGAAATCTTTCGGCAAAGGGAAAGCTTCTAATTCCTCGAAACTAGAGGTTTGTCAAGTTTGTAAGCAAGTGCTCATCCAAGACGATTTGACCGAACACTATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGAAAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTCTACATTGGCGTATGTTGGNCAACTTGTAGTACCGCCCGTAGATTAAGCTGTGCATAGAAAAGATAAATGCGCAAACGGATATTTGTTATAAGGCATGGAAATACAAAAATGTATATTCAGCATCGCTTTGTTCAATATGAACTAGCTTCAAACCATACAAAAGGTGCTTATGCTATAAATTTCCAGAATGAAATGCTTTTTGTTATTTTTTTAAATACCGATCTGGGTACTACAAGTAAACAGTTATTGGTTAACACATATTTACGAGACACAGTGAAATTGCTTAGCTTGTGCTAGAAAGAGTTACACAAATAAACTCCAATTACGATTACTTGCTACGGTCGAATGGTTCGTACAAAACACACTTAAAATGTCGATTTGTAATACAGAGATAGCATTGCAGGATAAAAAAAGTACTGAAAAGTGTTGGCTTTGTTTTGTAGGACGGACGAACCAAAATATCGAATTTGTACNAATGTTGCTGAAAATATCATGTACATAATAATAAAAGCTGCAATATCTATTGAAAT] [+] EMBL BM616595 [CCGCGGACGCGTGGGCGCGGAATAATAATAGTGAATCTGTTTCCAAAGGGGGTGGCGGCGGAGCGAAGGATCGTAACAAAGAGCAACAGCAGAAGCAACAGCAACACAGTAAATCCAATGGACAAAGCTCAGCCGCTACACAATCTTCTCCCACAAACAACAATAACATCCCTTCGTCGTTAAATAGTTCTTTCCCTGTGTTAGGCAGTTCTAACAGTGTTCATTTTGCACTAGCAGCCGGTCCCAAACGTACGCCACCTGGATTTGAAAACGTAAATTTAAAACGAATGCCCGGTCCTCCACCTGGCTTTGGGAATGTCACATTAAATTCCGTTGCAAGGAATGCGAACAACATGACTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTCTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCGAACCATTTCACAGATGTTCCGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACG ] [+] EMBL BX627933 [ CCGTTGCAAGGAATGCGAACAACATGACTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTCTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCGAACCATTTCACAGATGTTCCGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACGAAAACAATAGACCGAAATCTTTCGGCAAAGGGAAAGCTTCTAATTCCTCGAAACTAGAGGTTTGTCAAGTTTGTAAGCAAGTGCTCATCCAAGACGATTTGACCGAACACTATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGAAAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTCTACATTGGCGTATGTTGGNCAACTTGTAGTACCGCCCGTAGATTAAGCTGTGCAT ] [+] EMBL BX623112 [ GTTTCCCTGAAATTTTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAACAGGAACTTTATTTGGTATACTGCCAAGACGAAAACAATAGACCGAAATCTTTCGGCAAAGGGAAAGCTTCTAATTCCTCGAAACTAGAGGTTTGTCAAGTTTGTAAGCAAGTGCTCATCCAAGACGATTTGACCGAACACTATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGAAAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTCTACATTGGCGTATGTTGGCCAACTTGTAATACCGCCCGTAGATTAAGCTGTGCATAGAAAAGATAAATGCGCAAACGGATATTTGTTATAAGGCATGGAAATACAAAAATGTATATTCAGCATCGCTTTGTTCAATATGAACTAGCTTCAAACCATACAAAAGGTGCTTATGCTATAAATTTCCAGAATGAAATGCTTTTTGTTATTTTTTTAAATACCGATCTGGGTACTACAAGTAAACAGTTATTGGTTAACACATATTTACGAGACACAGTGAAATTGCTTAGCTTGTGCTAGAAAGAGTTACACAAATAAACTCCAATTACGATTACTTGCTACGGTCGAATGGTTCGTACAAAACACACTTAAAATGTCGATTTGTAATACAGAGATAGCATTGCAGGATAAAAAAAGTACTGAAAAGTGTTGGCTTTGTTTTGTAGGACGGACGAACCAAAATATCGAATTTGTACNAATGTTGCTGAAAATATCATGTACATAATAATAAAAGCTGCAATATCTATTGAAAT] consensusID : consensus_5143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1409 fasta sequence [TGCNGAGGCAGAATTGCCCGAGGTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTACTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCTGAACCATTTCACAGATGTTCCTGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCAAACCATCAGCAAACAACCAGGAACTTTATNNNGGTATACTGCAAGACGANAACAATAGACCGAAACTCTTATCGGCAACAGGGAAAAGCTTCTAATTCCTCGAAACTAGGAGGGTAATGTACAAGTATGTAAGGCAAGTGCTCCATCCCAAGACGACTCTGACCGAACACCTATCAGGACCACCATNGATCATGGGACAANACCAATTTTTNCCAAAAGCTTCGGAANAAGTACGATTGACCGGGCACACACAGGTCCGGGCTNCCATTCTGCACTGGCACACGCAACATTAAATCCTAATGGTCANAACGGTTCTACGCATAATGGAGCGTAATGTACGGGACCAACATTGGTAAGTACCCGGCACCCCGGNTAAGGCAATTCAANAGCCCTCTGGCTACGCCCNTTAAGCACNNACACAGCATTCAAACAACTTGGCCGCCAAAAAACCGGGACATNANTACCCGGGNNCACACTCACANCAGGGACAANTTGNGCCACAACTGTAAACCCAACAAGACATGTAACTTAACTAATCCAAGCCANCATCTCCGAGCNGCAAACACANGGGACAAGACNCAGCAAGAACNNACNTGGNGAGAAGCACCCCNACAAGGCCCGCTNATCCACCAACAACACAACNCCCAACGCTANAACCCCCACAACCCNCAACAGGGCGANCCAGCCCACCAACNAGGGGCNCACAGAACAACGACACCNACTACNNCACCCCACACCAACCACANTGGCACACAACACTGGGCCCACACNCACACAGGGACCACCAACCCCCCCNCCCACACACCACAAAACCCCCCCGNGGNCAAAAACCCTCCCAGNGGGGCATANANAAAACCCCTCAAACACANACCAGANACACGTTCACTAACCACAACAACAAACGANATCACGACNAACCTCCAGNGCGGCGCACNCAAAACCCANCCACAGCCNACAGTAACAATAATAAGCTNGAAGNCAGGNCAGCNGGCAAACACCACNCACACNNAGCATCAGGACANNCCAAACCGTATCCTGGCGCCAACTCCCCAAAANCAACGNGCCCGAGGNGNCCGNCCATACAAACAANCAAACCAGAGGAAACGAGTACAAAGCAAN] [+] EMBL AL693905 [TGCNGAGGCAGAATTGCCCGAGGTTTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTACTCTCCTTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAGTCAAGACGCGTTAATGGAGTTCCTGAACCATTTCACAGATGTTCCTGTGATGGGCAATACGAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATTTTTCCTGAACTGATCGCGTTACTGCAAACCATCAGCAAACAACCAGGAACTTTATNNNGGTATACTGCAAGACGANAACAATAGACCGAAACTCTTATCGGCAACAGGGAAAAGCTTCTAATTCCTCGAAACTAGGAGGGTAATGTACAAGTATGTAAGGCAAGTGCTCCATCCCAAGACGACTCTGACCGAACACCTATCAGGACCACCATNGATCATGGGACAANACCAATTTTTNCCAAAAGCTTCGGAANAAGTACGATTGACCGGGCACACACAGGTCCGGGCTNCCATTCTGCACTGGCACACGCAACATTAAATCCTAATGGTCANAACGGTTCTACGCATAATGGAGCGTAATGTACGGGACCAACATTGGTAAGTACCCGGCACCCCGGNTAAGGCAATTCAANAGCCCTCTGGCTACGCCCNTTAAGCACNNACACAGCATTCAAACAACTTGGCCGCCAAAAAACCGGGACATNANTACCCGGGNNCACACTCACANCAGGGACAANTTGNGCCACAACTGTAAACCCAACAAGACATGTAACTTAACTAATCCAAGCCANCATCTCCGAGCNGCAAACACANGGGACAAGACNCAGCAAGAACNNACNTGGNGAGAAGCACCCCNACAAGGCCCGCTNATCCACCAACAACACAACNCCCAACGCTANAACCCCCACAACCCNCAACAGGGCGANCCAGCCCACCAACNAGGGGCNCACAGAACAACGACACCNACTACNNCACCCCACACCAACCACANTGGCACACAACACTGGGCCCACACNCACACAGGGACCACCAACCCCCCCNCCCACACACCACAAAACCCCCCCGNGGNCAAAAACCCTCCCAGNGGGGCATANANAAAACCCCTCAAACACANACCAGANACACGTTCACTAACCACAACAACAAACGANATCACGACNAACCTCCAGNGCGGCGCACNCAAAACCCANCCACAGCCNACAGTAACAATAATAAGCTNGAAGNCAGGNCAGCNGGCAAACACCACNCACACNNAGCATCAGGACANNCCAAACCGTATCCTGGCGCCAACTCCCCAAAANCAACGNGCCCGAGGNGNCCGNCCATACAAACAANCAAACCAGAGGAAACGAGTACAAAGCAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5143#0 CCGCGGACGCGTGGGCGCGGAATAATAATAGTGAATCTGTTTCCAAAGGGGGTGGCGGCG 60 consensus_5143#1 ------------------------------------------------------------ consensus_5143#0 GAGCGAAGGATCGTAACAAAGAGCAACAGCAGAAGCAACAGCAACACAGTAAATCCAATG 120 consensus_5143#1 ------------------------------------------------------------ consensus_5143#0 GACAAAGCTCAGCCGCTACACAATCTTCTCCCACAAACAACAATAACATCCCTTCGTCGT 180 consensus_5143#1 ------------------------------------------------------------ consensus_5143#0 TAAATAGTTCTTTCCCTGTGTTAGGCAGTTCTAACAGTGTTCATTTTGCACTAGCAGCCG 240 consensus_5143#1 ------------------------------------------------------------ consensus_5143#0 GTCCCAAACGTACGCCACCTGGATTTGAAAACGTAAATTTAAAACGAATGCCCGGTCCTC 300 consensus_5143#1 ------------------------------------------------------------ consensus_5143#0 CACCTGGCTTTGGGAATGTCACATTAAATTCCGTTGCAAGGAATGCGAACAACATGAC-T 359 consensus_5143#1 ------------------------------------TGCNGAGGCAGAATTGCCCGAGGT 24 ** *** * ** * consensus_5143#0 TTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGT-CTCTCC 418 consensus_5143#1 TTTACGAACTCAACAGGGGAATCGTACAATATCTTGCCCACTTACAGTTATGTACTCTCC 84 ***************************************************** ****** consensus_5143#0 TTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAG 478 consensus_5143#1 TTCAAACGCCAGTAAAAGAAATCAAGTGCTTGTAACACATTTTCAAAGAGCGTTGAAAAG 144 ************************************************************ consensus_5143#0 TCAAGACGCGTTAATGGAGTTCC-GAACCATTTCACAGATGTTCC-GTGATGGGCAATAC 536 consensus_5143#1 TCAAGACGCGTTAATGGAGTTCCTGAACCATTTCACAGATGTTCCTGTGATGGGCAATAC 204 *********************** ********************* ************** consensus_5143#0 GAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATT 596 consensus_5143#1 GAAGCATCAGCTTATTATGAGCACTGCAGAGTAGCACTAGGTGATCGTTTCCATGAAATT 264 ************************************************************ consensus_5143#0 TTTCCTGAACTGATCGCGTTACTGCCAACCATCAGCAAACAAC-AGGAACTTTATTTGG- 654 consensus_5143#1 TTTCCTGAACTGATCGCGTTACTGCAAACCATCAGCAAACAACCAGGAACTTTATNNNGG 324 ************************* ***************** *********** * consensus_5143#0 TATACTGCCAAGACGAAAACAATAGACCGAAATCTTT--CGGCAA--AGGGAAAGCTTCT 710 consensus_5143#1 TATACTGC-AAGACGANAACAATAGACCGAAACTCTTATCGGCAACAGGGAAAAGCTTCT 383 ******** ******* *************** ** ****** ** ********* consensus_5143#0 AATTCCTCGAAACTAG-AGGTTTGT---CAAGTTTGTAAG-CAAGTGCTCA--TCCAAGA 763 consensus_5143#1 AATTCCTCGAAACTAGGAGGGTAATGTACAAGTATGTAAGGCAAGTGCTCCATCCCAAGA 443 **************** *** * * ***** ****** ********* ****** consensus_5143#0 CGATT-TGACCGAACAC-TATCAGACACATTATATGGAAAACAATTTTCCAAAGCTCGGA 821 consensus_5143#1 CGACTCTGACCGAACACCTATCAGGACCACCATNGATCATGGGACAANACCAATTTTTNC 503 *** * *********** ****** ** ** * * * ** * consensus_5143#0 AAAGTAGATGACGGAAAAGTCGGTTCATCTGCATGGAAGAAATAATCTATGTCAAAGTTC 881 consensus_5143#1 CAAA-AGCTTCGGAANAAGTACGATTGACCGGGCACACACA--GGTCCGGGCTNCCATTC 560 ** ** * * * **** * * * * * * ** * *** consensus_5143#0 TACATTGGCGTATGTTGGNCAACTTGTAGTACCGCCCGTAGATTAAGCTGTGCATAGAAA 941 consensus_5143#1 TGCACTGGCACACGC--AACATTAAATCCTAATGGTCANA-ACGGTTCTACGCATAATGG 617 * ** **** * * ** * ** * * * * ** ***** consensus_5143#0 AGATAAATGCGCAA-ACGGATATTTGTTATAAGGCATGGAAATACAAAAATGTATATTCA 1000 consensus_5143#1 AGCGTAATGTACGGGACCAACATTGGTAA--GTACCCGGCACCCCGGNTAAGGCAATTCA 675 ** **** * ** * *** ** * * ** * * * * ***** consensus_5143#0 GCATCGCTTTGTTCAA---TATGAACTAGCTTCAAACCATACAAAAGGTGCTTATGCTAT 1057 consensus_5143#1 ANAGCCCTCTGGCTACGCCCNTTAAGCACNNACACAGCATTCAAACAACTTGGCCGCCAA 735 * * ** ** * * ** * ** * *** **** ** * consensus_5143#0 AAATTTCCAGAATGAA-ATGCTTTTTGTTATTTTTTTAAATACCGATCTGGGTACTACAA 1116 consensus_5143#1 AAAACCGGGACATNANTACCCGGGNNCACACTCACANCAGGGACAANTTGNG--CCACAA 793 *** ** * * * * * * * * ** * * **** consensus_5143#0 GTAAACAGTTATTGGTTAACACATATTTACGAGACACAGTGAA-ATTGCTTAGCT----- 1170 consensus_5143#1 CTGTAAACCCAACAAGACATGTAACTTAACTAATCCAAGCCANCATCTCCGAGCNGCAAA 853 * * * * * * ** ** * * ** * ** * *** consensus_5143#0 --TGTGCTAGAAAGAGTTACACAAATAAACTCCAATTACGATTACTTGCTACGGTCGAAT 1228 consensus_5143#1 CACANGGGACAAGACNCAGCAAGAACNNACNTGGNGAGAAGCACCCCNACAAGGCCCGCT 913 * * ** ** ** ** * * ** * * consensus_5143#0 GGTTCGT-----ACAAAACACAC----TTAAAATGTC---GATTTGTAATACAGAGATAG 1276 consensus_5143#1 NATCCACCAACAACACAACNCCCAACGCTANAACCCCCACAACCCNCAACAGGGCGANCC 973 * * *** *** * * ** ** * * ** * * ** consensus_5143#0 CATTGCAGGATAAAAAAAGTACTGAAAAGTGTTGGCTTTGTTTTGTAGGACGGACGAACC 1336 consensus_5143#1 AGCCCACCAACNAGGGGCNCACAGAACAACGACA-CCNACTACNNCACCCCACACCAACC 1032 * * ** *** * * * * * * ** **** consensus_5143#0 AAAATATCGAAT----TTGTACNAATGTTGCTGAAAATATCATGTACATAATAAT--AAA 1390 consensus_5143#1 ACANTGGCACACAACACTGGGCCCACACNCACACAGGGACCACCAACCCCCCCNCCCACA 1092 * * * * * ** * * * * ** ** * * consensus_5143#0 AGCTGCAATATCTATT-GAAAT-------------------------------------- 1411 consensus_5143#1 CACCACAAAACCCCCCCGNGGNCAAAAACCCTCCCAGNGGGGCATANANAAAACCCCTCA 1152 * *** * * * consensus_5143#0 ------------------------------------------------------------ consensus_5143#1 AACACANACCAGANACACGTTCACTAACCACAACAACAAACGANATCACGACNAACCTCC 1212 consensus_5143#0 ------------------------------------------------------------ consensus_5143#1 AGNGCGGCGCACNCAAAACCCANCCACAGCCNACAGTAACAATAATAAGCTNGAAGNCAG 1272 consensus_5143#0 ------------------------------------------------------------ consensus_5143#1 GNCAGCNGGCAAACACCACNCACACNNAGCATCAGGACANNCCAAACCGTATCCTGGCGC 1332 consensus_5143#0 ------------------------------------------------------------ consensus_5143#1 CAACTCCCCAAAANCAACGNGCCCGAGGNGNCCGNCCATACAAACAANCAAACCAGAGGA 1392 consensus_5143#0 ----------------- consensus_5143#1 AACGAGTACAAAGCAAN 1409 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||