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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence
[CAGCAAGAGCAACAATTAGGATTTTACGTGAAATTTTTAGCCGTTTTGGAATGCCTAATGTTTTAGTAAGCGACAACGGGTCGCAGTTTGTAAGCACGGAGTTTGAGCTATTTTGTACGTTAAACGGCATTGAGCATTTGCGAACAGCCCCCTTCCATCCGCAATCCAACGGGCAAGCGGAAAGATTTGTGGATACATTTAAACGGGCACTTAAGAAAATGGAGGGGGAAGGTGGTACAGTGCAAGAAGCAATAGATATTTTCTTAATGACGTATCGAAGCATACCGCATAAGCTTTTGGAACGGAATCAATCGCCAGCAGAAGTGATGATAGGGCGTAAAATGCGTACATGCATGGA--GCTTTTGCGACCGTCTATGGATTATTGGCAC-AGACGTTAAACATAGGATGCGATT-AAGAAAATATGAATGTAATGATCTCGTTTACGC-AAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGG-AAGCGTTTAGGCTCGGTTATGTA-CGAGATTGTTACCACA-GAAAATAGACATTTACGATCCCATATTAATCAGTTGCGTTCTCGAGTGAGTGATAAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTTCGTACCGTATGTTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGAATGAACCGGGAGCTAGCAGGCAGGGAAACGCTGAAATGAACNCGGATATAGCTAGGGCACAATATACGGAATCGCCATCGTTGGCTATATCGTCATCAACCCCATCATCCTCATCGTCTTCACCGCTACTGTCGTCCGTCCAGGCGGTT]
[+] EMBL BX627881 [CAGCAAGAGCAACAATTAGGATTTTACGTGAAATTTTTAGCCGTTTTGGAATGCCTAATGTTTTAGTAAGCGACAACGGGTCGCAGTTTGTAAGCACGGAGTTTGAGCTATTTTGTACGTTAAACGGCATTGAGCATTTGCGAACAGCCCCCTTCCATCCGCAATCCAACGGGCAAGCGGAAAGATTTGTGGATACATTTAAACGGGCACTTAAGAAAATGGAGGGGGAAGGTGGTACAGTGCAAGAAGCAATAGATATTTTCTTAATGACGTATCGAAGCATACCGCATAAGCTTTTGGAACGGAATCAATCGCCAGCAGAAGTGATGATAGGGCGTAAAATGCGTACATGCATGGA GCTTTTGCGACCGTCTATGGATT TGGGCAC AGACGTTAAACATAGGATGCGATT AAGAAAATATGAATGTAATGATCTCGTTTACGC AAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGG AAGCGTTTAGGCTCGGTTATGTA CGAGATTGTTACCACA GAAAATAGACATTTACGATCCCATATTAATCAGTTGCGTTCTCGAGTGAGTGATAAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTTCGTACCGTATGTTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGAATGAACCGGGAGCTAGCAGGCAGGGAAACGCTGAAATGAACNCGGATATAGCTAG ]
[+] EMBL AL694462 [ cccccgAGGTTGT AAATGCGTACATGCATGGACGGCTTTTGCGACCGTCTATGGATTATTGGCACAAGACGTTAAACATAGGATGCGATTAAAGAAAATATGAATGTAATGATCTCGTTTACGCAAAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGGAAAGCGTTTAGGCTCGGTTATGTACCGAGATTGTTACCACAGGAAAATAGACATTTAC ]
[+] EMBL AL930877 [ cgaGGTTTA TGGCAC AGACGTT AACATAGGATGCGATT AGAAAATATGAATGTAATGATCTCGTTTACGC AAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGG AAGCGTTTAGGCTCGGTTATGTA CGAGATTGTTACCACA GAAAATAGACATTTACGATCCCACATTAATCAGTTGCGTTCTCGAGTGAGTGATAAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTTCGTACCGTATGTTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGAATGAACCGGGAGCTAGCAGGCAGGGAAACGCTGAAATGAACACGTATATAGCTAGGGCACAATATACGGAATCGCCATCGTTGGCTATATCGTCATCAACCCCATCATCCTCATCGTCTTCACCGCTACTGTCGTCCGTCCAGGCGGTT]
consensusID : consensus_5161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence
[TATGCTGAGCAGAATACCGNGTTAAGATACGGATAAGCTTTTGGAACGGATAATCGTCAGAGAAGTGATGATAGGGGTAAAATGTGTACATGCATGGAGTTTTGCTGACTGTTATGGATTATGGACAGACGTNTAAACATAGGATGCGATATAAGAAAATATGAATGTAATGATACTACGTATATAGCAAAAGAGTATATTAGAAACAAATGGAACATGGGTATCNCGGAACAGTCAGGAAGCGTATAGGCTCGGTATATGTACGCAGATNTGTTACCAAANGGAAAAATTAGACANTGCAGCGGAAAGCGCAAACGAGTAAAAATACAGGAAGGCGATACAATCCGAAGCTGAAGATNGAATAAAACAAATACAAAGACTNCCGNTAACCGATAGGAACTGACGNTCCACCGGCATAACCGGAAACCACGGACACAGGCNNCACCGCCCCCCTNCGCANACGCCNCCGGCCNCNGCCCCCGCACCCNGCCNACGTTGCACCACCCNTCCCGCACACACCNGGNACACCCCCGGCAGCTNCCCGCTCCCATANCNCCCNCCCCCCGATCGAGCACCANANCTGGTGGCCAAAAACTACCNGGCCCATGTGACTCACTTGTGTAACCCAACACGTTGTAATTTACTTACGCCCTTAACAGTTGGGCCAACAACTCAACATNCACCGGGNGCTACACAACTTATNCTGCCCCACAACTACATACNCAGGTGGCCACNANACNCCTCCCAGCGCACNACATATCCACCCCCCCCCCCCAACCCCCNCCNNCCCCNNACCCNCACCCCCNCCNCCCCCTACCACN]
[+] EMBL AL695676 [TATGCTGAGCAGAATACCGNGTTAAGATACGGATAAGCTTTTGGAACGGATAATCGTCAGAGAAGTGATGATAGGGGTAAAATGTGTACATGCATGGAGTTTTGCTGACTGTTATGGATTATGGACAGACGTNTAAACATAGGATGCGATATAAGAAAATATGAATGTAATGATACTACGTATATAGCAAAAGAGTATATTAGAAACAAATGGAACATGGGTATCNCGGAACAGTCAGGAAGCGTATAGGCTCGGTATATGTACGCAGATNTGTTACCAAANGGAAAAATTAGACANTGCAGCGGAAAGCGCAAACGAGTAAAAATACAGGAAGGCGATACAATCCGAAGCTGAAGATNGAATAAAACAAATACAAAGACTNCCGNTAACCGATAGGAACTGACGNTCCACCGGCATAACCGGAAACCACGGACACAGGCNNCACCGCCCCCCTNCGCANACGCCNCCGGCCNCNGCCCCCGCACCCNGCCNACGTTGCACCACCCNTCCCGCACACACCNGGNACACCCCCGGCAGCTNCCCGCTCCCATANCNCCCNCCCCCCGATCGAGCACCANANCTGGTGGCCAAAAACTACCNGGCCCATGTGACTCACTTGTGTAACCCAACACGTTGTAATTTACTTACGCCCTTAACAGTTGGGCCAACAACTCAACATNCACCGGGNGCTACACAACTTATNCTGCCCCACAACTACATACNCAGGTGGCCACNANACNCCTCCCAGCGCACNACATATCCACCCCCCCCCCCCAACCCCCNCCNNCCCCNNACCCNCACCCCCNCCNCCCCCTACCACN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5161#0 CAGCAAGAGCAACAATTAGGATTTTACGTGAAATTTTTAGCCG--TTTTGGAATGCCTAA 58
consensus_5161#1 -------TATGCTGAGCAGAATACCGNGTTAAGATACGGATAAGCTTTTGGAACGGATAA 53
* ** ** ** ** * ******** * ***
consensus_5161#0 TGTTTTAGTAAGCGACAACGGGTCGCAGTTTGTAAGCACGGAGTTTGAGCTATTTTGTAC 118
consensus_5161#1 TCGTCAGAGAAGTGATGATAGGG-GTAAAATGTGTACATGCA--TGGAGTTTTGCTGACT 110
* * *** ** * ** * * *** ** * * * *** * * **
consensus_5161#0 GTTAAACGGCATTGA-GCATTTGCGAACAGCCCCCTTCCATCCGCAATCCAACGG-GCAA 176
consensus_5161#1 GTTATGGATTATGGACAGACGTNTAAACA------TAGGATGCGATATAAGAAAATATGA 164
**** ** ** * * **** * ** ** ** * *
consensus_5161#0 GCGGAAAGAT-TTGTGGATACATTTAAACGGGCACTTAAGAA--AATGGAG---GGGGAA 230
consensus_5161#1 ATGTAATGATACTACGTATATAGCAAAAGAGTATATTAGAAACAAATGGAACATGGGTAT 224
* ** *** * * *** * *** * *** ** ****** *** *
consensus_5161#0 GGTGGTACAGTGCAAGAAGCA-ATAG-------ATATTTTCTTAATGACGTATCGAAGCA 282
consensus_5161#1 CNCGGAACAGT-CAGGAAGCGTATAGGCTCGGTATATGTACGCAGATNTGTTACCAAANG 283
** ***** ** ***** **** **** * * * ** * **
consensus_5161#0 TACCGCATAAGCTTTTGGAACGGAATCAATCGCCAGCAGAAGTGATGATAGGGCGTAAAA 342
consensus_5161#1 GAAAAATTAGACANTGCAGCGGAAAGCGCAAACGAGTAAAAATACAGGAAGGCGATACAA 343
* ** * * * ** * * ** * ** * * *** ** **
consensus_5161#0 TGCGTACATGCATGGAGCTTTTGCGACCGTCTATGGATTATTGGCACAGACGTTAAACAT 402
consensus_5161#1 TCCGAAGCTGAAGATNGAATAAAACAA-ATACAAAGACTNCCGNTA-ACCGATAGGAACT 401
* ** * ** * * * * * * ** * * * * * * *
consensus_5161#0 AGGATGCGATTAAGAAAATATGAATGTAATGATCTCGTTTACGCAAAACAGTATATTAGA 462
consensus_5161#1 GACGNTCCACCGGCATAACCGGAAACCACGGACACAGGCNNCACCGCCCCCCTNCGCANA 461
* * * ** *** * ** * * * * * *
consensus_5161#0 AACAAATGGAAATGGGTATCCGGAACAGTCAG-GAAGCGTTTAGGCTCGGTTATGTACGA 521
consensus_5161#1 CGCCNCCGGCCNCNGCCCCCGCACCCNGCCNACGTTGCACCACCCNTCCCGCACACACCN 521
* ** * * * * * * ** ** * **
consensus_5161#0 GATTGTTACCACAGAAAATAGACATTTACG-ATCCCATATTAATCAGTTGCGTTCTCGAG 580
consensus_5161#1 GGN-ACACCCCCGGCAGCTNCCCGCTCCCATANCNCCCNCCCCCCGATCGAGCACCANAN 580
* ** * * * * * * * * * * * * * * * *
consensus_5161#0 TGAGTGAT---AAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTT-CGTACCGTATG 636
consensus_5161#1 CTGGTGGCCAAAAACTACCNGGCCCATGTGACTCACTTGTGTAACCCAACACGTTGTAAT 640
*** **** * * * ** * * ** ** ** ** * ***
consensus_5161#0 TTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGA-ATGAACCGGGAGCTA-GCAGGC 694
consensus_5161#1 TTACTTACGCCCTTA-ACAGTTGGGCCAACAACTCAACATNCACCGGGNGCTACACAACT 699
*** * ** * ***** * ***** * ** ****** **** **
consensus_5161#0 AGGGAAACGCTGAAATGA-ACNCGGATATAGCTAGGGCACAATATACGGAATCGCCATCG 753
consensus_5161#1 TATNCTGCCCCACAACTACATACNCAGGTGGCCACNANACNCCTCCCAGCG-CACNACAT 758
* * ** * * * * * ** * ** * * * * *
consensus_5161#0 TTGGCTATATCGTCATCAACCCCATCATCCTCATCGTCTTCACCGCTACTGTCGTCCGTC 813
consensus_5161#1 ATCCACCCCCCCCCCCCAACCCCCNCCNNCCCCNNACCCNCACCCCCNCCNCCCCCTACC 818
* * * ******* * * * * **** * * * * *
consensus_5161#0 CAGGCGGTT 822
consensus_5161#1 ACN------ 821
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||