These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1155 fasta sequence [CCGAGGTAAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGATATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAATTTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCCTAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCGCGG-TAGTCGTCCTCTGTCCACGTTATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAA-AAGTGGGTAAAATCAGAA-AAAGGACTCACATCGAATACGAAAATCT-CCTC-CCTTGACACAACTTAATCG-CTTTGTGCGCGCACAAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTATGGAAAACTAAAAGACAGCCATCACTTTCACGCACTCTAGGATCGATCCTTGGAACCATTGCAAGGGTTTCCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAACATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGGTTCAATGCAAAAACAAATATGCGTTAAGGCAATAAAGGGGACAGAGAGAGAGACAAATATGCTACAAGTACAAGGCGCAACAGAAAGGGGGCTTGGCCGTTAAGGGAAAGGCATTTCCTAAGTAACCAGGCCATAAGCCTATCCGGTGGTTAACTTGTACACACACACGGGACGTTACACAAACTGGTGGAAACCGAATTAAAACACGGAAATGGCACCACNTAAAAGCAAGGGNATTTCGGGTCGGTTNGGGAGCACTTCNTTANAAAGGNTTGGAACNCGGGNTAAACGATGNGGTGGTATCACAACTGGGGTTGACCCTTAAAAGGNTGAAAACCGGNTTGCCACGCACAGATTGTTGACCGGACTGACGNGNTAGGGAGCCCCAAGATNNGGGTCTTCANAAAGAGGCNTCTTNCGACGGCATTA] [+] EMBL AL694652 [CCGAGGTAAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGATATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAATTTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCCTAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCGCGG TAGTCGTCCTCTGTCCACG TATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAACAAGTGGGTAAAATCAGAA AAAGGACTCACATCGAATACGAAAATCT CCTCTCTTTGACACAACTTAATCG CTTTGTGCGCGCACAAAACA ACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTATGGAAAACTAAA ] [+] EMBL AL694536 [CCGAGGTTAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGATATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAATTTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCCTAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCGCGGCTAGTCGTCCTCTGTCCACGTTATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAA AAGTGGGTAAAATCAGAACANAGGACTCACATCGAATACGAAAATCTCCCTC TCTTGACNCAACTTNNTCGCCTTCGTGCGCGCAC AAACACACCAACACACAcgct ] [+] EMBL BX467922 [ gcaagAATCGGCACGA T GGCGACCTCTGTCCACGTTATTTCGTATGCGCACGGGGAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCGGAAAAGAAAAACAGAACAAA AAATGGTTAAAATCAGAA AAAGGACTCACATCGAATACGAAAATCT CCTC CCTTGACACAACTTAATCG CTTTGTGCGCGCACAACACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTTTGG AAACTAAAAGACAGCCATCACTTTCACGCACTCTAGGATCGATCCTTGGAACCATTGCAAGGGTTTCCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAACATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGGTTCAATGCAAAAACAAATATGCGTTAAGGCAATAAAGGGGACAGAGAGAGAGACAAATATGCTACAAGTACAAGGCGCAACAGAAAGGGGGCTTGGCCGTTAAGGGAAAGGCATTTCCTAAGTAACCAGGCCATAAGCCTATCCGGTGGTTAACTTGTACACACACACGGGACGTTACACAAACTGGTGGAAACCGAATTAAAACACGGAAATGGCACCACNTAAAAGCAAGGGNATTTCGGGTCGGTTNGGGAGCACTTCNTTANAAAGGNTTGGAACNCGGGNTAAACGATGNGGTGGTATCACAACTGGGGTTGACCCTTAAAAGGNTGAAAACCGGNTTGCCACGCACAGATTGTTGACCGGACTGACGNGNTAGGGAGCCCCAAGATNNGGGTCTTCANAAAGAGGCNTCTTNCGACGGCATTA] consensusID : consensus_5165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGCGAAAATCTCCTCCCTTGACACAACTTAATCGCTATGTGCGCGCACAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTTTGGAAACTAAAAGACAGCCATCACTTTCACGCACTATAGGATCGATCCTTGGAACCATTGCATAGGGTTTGCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAATATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGTTAATGCGAAAACAAATATGCGTAAGGCAATAAAGGGAAACACATTAATACAAGCGAAAATACAAGCGAAAGAAAGGGCTGCCTTAGGAAGCATTCTAGTAACAGCATAGCTATCGTGTAATGTAAAAAGGAGTAAAAATGTTAACGATAAACAGAATGCACACTGTATTGTGTTATCTCTAAAGTGACCGTTAGTGTGTCCACTGTCCTAAACTAACGTTCACAATGTCGTTGTGTGGCCCATTTGTCTCAAAGCCTCAGCATATTCGTCGCAGCTTCCATGTACGCACAAAACATACGCACACACACAGTAAACCCAGGGGAGGTGTTTGCGCATAACTGTTGCTAATGTGTCTTACATCAACGCGCAAACTTAGTACGCAAAAGGGTATATGGGCAGCATAGCT] [+] EMBL BM636335 [CCGCGAAAATCTCCTCCCTTGACACAACTTAATCGCTATGTGCGCGCACAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTTTGGAAACTAAAAGACAGCCATCACTTTCACGCACTATAGGATCGATCCTTGGAACCATTGCATAGGGTTTGCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAATATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGTTAATGCGAAAACAAATATGCGTAAGGCAATAAAGGGAAACACATTAATACAAGCGAAAATACAAGCGAAAGAAAGGGCTGCCTTAGGAAGCATTCTAGTAACAGCATAGCTATCGTGTAATGTAAAAAGGAGTAAAAATGTTAACGATAAACAGAATGCACACTGTATTGTGTTATCTCTAAAGTGACCGTTAGTGTGTCCACTGTCCTAAACTAACGTTCACAATGTCGTTGTGTGGCCCATTTGTCTCAAAGCCTCAGCATATTCGTCGCAGCTTCCATGTACGCACAAAACATACGCACACACACAGTAAACCCAGGGGAGGTGTTTGCGCATAACTGTTGCTAATGTGTCTTACATCAACGCGCAAACTTAGTACGCAAAAGGGTATATGGGCAGCATAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5165#0 CCGAGGTAAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGA 60 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 TATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAAT 120 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 TTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCC 180 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 TAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCG 240 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 CGGTAGTCGTCCTCTGTCCACGTTATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAA 300 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 TGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGC 360 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 GAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAAAAGTGGGTA 420 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 AAATCAGAAAAAGGACTCACATCGAATACGAAAATCTCCTCCCTTGACACAACTTAATCG 480 consensus_5165#1 -------------------------CCGCGAAAATCTCCTCCCTTGACACAACTTAATCG 35 ******************************** consensus_5165#0 CTTTGTGCGCGCACAAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCC 540 consensus_5165#1 CTATGTGCGCGCACAAA-CACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCC 94 ** ************** ****************************************** consensus_5165#0 GTATGGAAAACTAAAAGACAGCCATCACTTTCACGCACTCTAGGATCGATCCTTGGAACC 600 consensus_5165#1 GTTTGGAAA-CTAAAAGACAGCCATCACTTTCACGCACTATAGGATCGATCCTTGGAACC 153 ** ****** ***************************** ******************** consensus_5165#0 ATTGCA-AGGGTTTCCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAA 659 consensus_5165#1 ATTGCATAGGGTTTGCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAA 213 ****** ******* ********************************************* consensus_5165#0 ACGTCTGTGCTTGGAATAAAGAAGCTAACATTGTCTTTCTATCCCGTATCTTGTGTGCTT 719 consensus_5165#1 ACGTCTGTGCTTGGAATAAAGAAGCTAATATTGTCTTTCTATCCCGTATCTTGTGTGCTT 273 **************************** ******************************* consensus_5165#0 CTGTTGGTTCAATGCAAAAACAAATATGCGTTAAGGCAATAAAGGGGACAGAGAGAGAGA 779 consensus_5165#1 CTGTTG--TTAATGCGAAAACAAATATGCGT-AAGGCAATAAAGG-----------GAAA 319 ****** * ***** *************** ************* ** * consensus_5165#0 CAAATATGCTACAAGTACAAGGCGCAACAGAAAGGGGGCTTGGCCGTTAAGGGAAAGGCA 839 consensus_5165#1 CACAT-TAATACAAGCG-AAAATACAAGCGAAAGAAAGGGCTGCCTTAGGAAGCATTCTA 377 ** ** * ****** ** *** ***** * *** * * * * consensus_5165#0 TTTCCTAAGTAACCAGGCCATAAGCCTATCCGGTGGTTAACTTGTACAC-ACACACGGGA 898 consensus_5165#1 GTAACAGCATAGCTATCGTGTAA-TGTAAAAAGGAGTAAAAATGTTAACGATAAACAGAA 436 * * ** * * *** ** * ** ** *** ** * * ** * * consensus_5165#0 CGTTACACAAACTGGTGGAAAC-CGAATTAAAACACGGAAATGGCACCACNTAAAAGCAA 957 consensus_5165#1 TGC-ACACTGTATTGTGTTATCTCTAAAGTGACCGTTAGTGTGTCCACTGTCCTAAACTA 495 * **** * *** * * * ** * * ** * * ** * * consensus_5165#0 GGGNATTTCGGGTCGGTTNGGGAGCACTTCNTTANAAAGGNTTGGAACNCGGGNTA-AAC 1016 consensus_5165#1 ACGTTCACAATGTCGTTGTGTGGCCCATTTGTCTCAAAGCCTCAGCATATTCGTCGCAGC 555 * **** * * * * ** * **** * * * * * * consensus_5165#0 GATGNGGTGGTATCACAACTGGGGTTGACCCTTAAAAGGNTGAAAACCGGNTTGCCACGC 1076 consensus_5165#1 TTCCATGTACGCACAAAACATACGCACACACACAGTAAACCCAGGGGAGGTGT-TTGCGC 614 ** ** *** * ** * * * * ** * *** consensus_5165#0 ACAGATTGTTGACCGGACTGACGNGNTAGGGAGCCCCAAGATNNGGGTCTTCANAAAGAG 1136 consensus_5165#1 ATA-ACTGTTG------CTAATGTGTCTTACATCAACGCG--CAAACTTAGTACGCAAAA 665 * * * ***** ** * * * * * * * * * * * consensus_5165#0 GCNTCTTNCGACGGCATTA-- 1155 consensus_5165#1 GGGTATATGGGCAGCATAGCT 686 * * * * * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||