These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence [AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTGTTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCATTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGACTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGAGAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTACCCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGAGATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA] [+] EMBL AL932871 [AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTGTTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCATTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGACTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGAGAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTACCCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCG ] [+] EMBL BX617210 [ GGTGGAAGACGATAACTGTGACGAGGCAGTAACACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGAGATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA] consensusID : consensus_5170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGATAGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTTGCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTG] [+] EMBL AL694724 [GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGATAGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTTGCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTG] consensusID : consensus_5170#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT] [+] EMBL BX616110 [TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5170#1 ------------------------------------------------------------ consensus_5170#2 -----------------TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTC 43 consensus_5170#0 AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTG 60 consensus_5170#1 ------------------------------------------------------------ consensus_5170#2 CCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAAT--TCTGCT 101 consensus_5170#0 CAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTG 120 consensus_5170#1 --------------------------------------GCCCGAGTTA-----AAGTCCT 17 consensus_5170#2 TTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGA-----AGTTCCT 156 consensus_5170#0 TTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCA 180 * * * ** consensus_5170#1 TTGGGTGTTTGCATCGAAGGGGCGG-GTTGAACGTTTAAACTCTGTG--CTTGTATAA-A 73 consensus_5170#2 TAGGGTGTTTGCATCGAAGGGGCGG-GTTGAACGTTTAAACTCTGTG--CTTGTATAA-A 212 consensus_5170#0 TTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGA 240 * * * *** * *** * * * ** * *** * * **** * consensus_5170#1 TACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTT 133 consensus_5170#2 TACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTT 272 consensus_5170#0 CTTTCTTAATAATTACTATTTA-GCAAACGAATCACATAACACAACCGCTCTACACAGAG 299 * ** * * ** * * * * * ***** * ** * * * consensus_5170#1 TTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAG--GT 191 consensus_5170#2 TTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAG--GT 330 consensus_5170#0 AGAATGAC-ACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGT 358 * * * * * ****** *** * * *** * * * * * ** consensus_5170#1 TTGAGCTGGTTAGATGGCATAATTATTATGTTTAGT-TTTN-GTTTTCCGTTGCTTATCG 249 consensus_5170#2 TTGAGCTGGTTAGATGGCATAATTATTATGTTTTGT-TTTTTGTTTTCCGTTGCTTATCG 389 consensus_5170#0 ACCCAAAAGCTCTATTCTACACACAC-ACGTACGATCTTTTTATCCTTCTCAACGCGTTG 417 * * ** * * * * ** * *** * * * * * * consensus_5170#1 TGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTT 309 consensus_5170#2 TGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT------------------ 431 consensus_5170#0 AACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATAT 477 ** ** ** *** * * ** * consensus_5170#1 TTTTTT-----AACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGT 364 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 GCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGA 537 consensus_5170#1 TTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAA 424 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 TTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTG 597 consensus_5170#1 AATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACC 484 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 GGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCT 657 consensus_5170#1 ACAATGCGATGCATTATAA----TTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGAT 540 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 AACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCC 717 consensus_5170#1 AGTGTATTTCATTTATTATTAGTGCGAAAGGT--TTCAGTCTTTATTTAGNAGTATATCG 598 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 GGAG-ATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGT 776 consensus_5170#1 TTGCCTG-GCGGGTTCGGA-------TTCAATCAAAGCACTTCTCTTCATTCGGCCGAAG 650 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 GTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGG 836 consensus_5170#1 AGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGG 710 consensus_5170#2 ------------------------------------------------------------ consensus_5170#0 TTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGA 896 consensus_5170#1 TGTAAAGTGCCACGTG--------------------- 726 consensus_5170#2 ------------------------------------- consensus_5170#0 TGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA 933 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||