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Anopheles gambiae
cluster # 5170 cluster # 5170       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5170#0 length = 933 sequences # 2  
consensus_5170#1 length = 726 sequences # 1  
consensus_5170#2 length = 431 sequences # 1  

consensusID : consensus_5170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 933
fasta sequence
                              [AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTGTTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCATTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGACTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGAGAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTACCCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGAGATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA]

[+] EMBL AL932871             [AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTGTTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCATTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGACTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGAGAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTACCCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCG                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX617210             [                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTGGAAGACGATAACTGTGACGAGGCAGTAACACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGAGATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA]


>consensus_5170#0 AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTG CAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTG TTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCA TTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGA CTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGA GAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTAC CCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAAC GTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCA GTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTG GAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGA AAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAAC ATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGA GATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGC GTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTG CCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAA GGTAAAAACGATCGTCATCAAAGCTATGATCTA



consensusID : consensus_5170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 726
fasta sequence
                              [GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGATAGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTTGCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTG]

[+] EMBL AL694724             [GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGATAGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTTGCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTG]


>consensus_5170#1 GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCT GTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCA TCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAAC CAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGT TGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTC TTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTA TTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGA AGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAA CACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGAT AGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTT GCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAG TAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGC CACGTG



consensusID : consensus_5170#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence
                              [TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT]

[+] EMBL BX616110             [TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT]


>consensus_5170#2 TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGT GGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAG AAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCG GGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTT GTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTC GCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATG TTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTT CCAGCGATGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5170#1      ------------------------------------------------------------
consensus_5170#2      -----------------TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTC 43
consensus_5170#0      AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTG 60
                                                                                  

consensus_5170#1      ------------------------------------------------------------
consensus_5170#2      CCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAAT--TCTGCT 101
consensus_5170#0      CAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTG 120
                                                                                  

consensus_5170#1      --------------------------------------GCCCGAGTTA-----AAGTCCT 17
consensus_5170#2      TTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGA-----AGTTCCT 156
consensus_5170#0      TTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCA 180
                                                                 *   *     *   ** 

consensus_5170#1      TTGGGTGTTTGCATCGAAGGGGCGG-GTTGAACGTTTAAACTCTGTG--CTTGTATAA-A 73
consensus_5170#2      TAGGGTGTTTGCATCGAAGGGGCGG-GTTGAACGTTTAAACTCTGTG--CTTGTATAA-A 212
consensus_5170#0      TTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGA 240
                      *    * * ***      *  ***  *    * *  **  *   ***   * * **** *

consensus_5170#1      TACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTT 133
consensus_5170#2      TACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTT 272
consensus_5170#0      CTTTCTTAATAATTACTATTTA-GCAAACGAATCACATAACACAACCGCTCTACACAGAG 299
                          *  **   * * **  *   *     *   * *  ***** *  ** * * *    

consensus_5170#1      TTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAG--GT 191
consensus_5170#2      TTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAG--GT 330
consensus_5170#0      AGAATGAC-ACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGT 358
                          *  * *   *  * ******    *** * * ***  *  *  * *    *   **

consensus_5170#1      TTGAGCTGGTTAGATGGCATAATTATTATGTTTAGT-TTTN-GTTTTCCGTTGCTTATCG 249
consensus_5170#2      TTGAGCTGGTTAGATGGCATAATTATTATGTTTTGT-TTTTTGTTTTCCGTTGCTTATCG 389
consensus_5170#0      ACCCAAAAGCTCTATTCTACACACAC-ACGTACGATCTTTTTATCCTTCTCAACGCGTTG 417
                              * *  **   * *   *  * **    * ***   *  * *    *   * *

consensus_5170#1      TGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTT 309
consensus_5170#2      TGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT------------------ 431
consensus_5170#0      AACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATAT 477
                         **   ** **    *** *    *       **  *                     

consensus_5170#1      TTTTTT-----AACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGT 364
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      GCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGA 537
                                                                                  

consensus_5170#1      TTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAA 424
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      TTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTG 597
                                                                                  

consensus_5170#1      AATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACC 484
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      GGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCT 657
                                                                                  

consensus_5170#1      ACAATGCGATGCATTATAA----TTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGAT 540
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      AACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCC 717
                                                                                  

consensus_5170#1      AGTGTATTTCATTTATTATTAGTGCGAAAGGT--TTCAGTCTTTATTTAGNAGTATATCG 598
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      GGAG-ATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGT 776
                                                                                  

consensus_5170#1      TTGCCTG-GCGGGTTCGGA-------TTCAATCAAAGCACTTCTCTTCATTCGGCCGAAG 650
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      GTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGG 836
                                                                                  

consensus_5170#1      AGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGG 710
consensus_5170#2      ------------------------------------------------------------
consensus_5170#0      TTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGA 896
                                                                                  

consensus_5170#1      TGTAAAGTGCCACGTG--------------------- 726
consensus_5170#2      -------------------------------------
consensus_5170#0      TGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA 933
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)