These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAAACGAATTGCTAAT] [+] EMBL BM600633 [CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTA ] [+] EMBL BX623220 [ TGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAAACGAATTGCTAAT] consensusID : consensus_5181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAGCGAATACAG] [+] EMBL AL694890 [TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAGCGAATACAG] consensusID : consensus_5181#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGCGGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCACGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGGACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTGCGAATCGTTGGATGGTNAGAGTGTG] [+] EMBL BX619984 [ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGCGGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCACGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGGACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTGCGAATCGTTGGATGGTNAGAGTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5181#0 CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTG---------A 51 consensus_5181#2 -----------------------------ACAGATCATCGAACAGCACTGTCTTCCAAGA 31 consensus_5181#1 TCCCCCGAGGTT-----AAACACTTCGAGGTAGATCATCGGACAGCACTG---------A 46 ********* ********* * consensus_5181#0 TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTA 111 consensus_5181#2 TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTA 91 consensus_5181#1 TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTA 106 *********************************************** ******** *** consensus_5181#0 TTTCGC-TTATCTGCCAGTAATCGTGAGGC-GATAGGTTATAGAGTTTTGCAGCAGAAAT 169 consensus_5181#2 TTTCGC-TTATCTGCCAGTAATCGTGATGC-GGTAGGTTATAGAGCATTTGAGGAGAAAT 149 consensus_5181#1 TTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAAT 166 ****** ******************** ** * ************ ** ** ****** consensus_5181#0 CGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGAT 229 consensus_5181#2 CGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGAT 209 consensus_5181#1 CGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGAT 226 ******************* **** * * *************** ******* ** **** consensus_5181#0 CGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGT 289 consensus_5181#2 CGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGT 269 consensus_5181#1 CGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGT 286 ******************* ** ** ********************** *** ******* consensus_5181#0 ACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGG 349 consensus_5181#2 ACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGG 329 consensus_5181#1 ACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGG 346 ** * ** **************** ********* ****** * *********** **** consensus_5181#0 GCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 409 consensus_5181#2 GCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 389 consensus_5181#1 GCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 406 ***************** *** ************************************* consensus_5181#0 TTAATCAATGGACTCAGGGTGAACCAAATCATGCTCA-GGTGGGCAACTGTACAGTGGAG 468 consensus_5181#2 TTGATCGGTGGACTCANNGTGAACCCAACCACGGGCN-GGTGAACGATTGTACAGTGGAG 448 consensus_5181#1 TTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAG 466 ** *** ***** ** ******* ** ** * * **** * * ************ consensus_5181#0 CATTGTGTGGTGCTGCAGCACTACCAAAACGG-TCTCG-GTGCTACCTATTCGTTT-GAT 525 consensus_5181#2 CGTTGTGTGGTGCTGCAGCACTACCAAAACGG-ACATG-GTGCTANCTATTCGTTT-GAT 505 consensus_5181#1 CATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGAT 526 * ****************************** * * ****** ******* ** *** consensus_5181#0 GATAGAGCATGTGAATGGCAAT-ACTATTTCATGTGCGAA-TCCTTAGATT--GTTAGAG 581 consensus_5181#2 GATAGACCATGCGAAAGGGAAT-ACTTTTTCATGTGCGAA-TCGTTGGATG--GTNAGAG 561 consensus_5181#1 GATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAA 586 ****** **** *** ** *** *** **** ******** ** ** ** ** * * consensus_5181#0 TGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAG 641 consensus_5181#2 TGTG-------------------------------------------------------- 565 consensus_5181#1 NCTGCCAGGAC----TAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGG-GCCTCNA 641 consensus_5181#0 TTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGA 701 consensus_5181#2 ------------------------------------------------------------ consensus_5181#1 CTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGC-ANNAGCATTCCTA 700 consensus_5181#0 ATCAAATCTCTTAAAATAAACGAATTGCTAAT 733 consensus_5181#2 -------------------------------- consensus_5181#1 TTCACTACNNCAATCAACAGCGAATACAG--- 729 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||