Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5181 cluster # 5181       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5181#0 length = 733 sequences # 2  
consensus_5181#1 length = 729 sequences # 1  
consensus_5181#2 length = 565 sequences # 1  

consensusID : consensus_5181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence
                              [CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAAACGAATTGCTAAT]

[+] EMBL BM600633             [CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTA                                                                                                                                                                   ]
[+] EMBL BX623220             [                                                          TGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAAACGAATTGCTAAT]


>consensus_5181#0 CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATG GCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTA TCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTC GGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTC TTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAA AGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTG GGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGG ACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTG CTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAA TGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGG GTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATT ATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAA ACGAATTGCTAAT



consensusID : consensus_5181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence
                              [TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAGCGAATACAG]

[+] EMBL AL694890             [TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAGCGAATACAG]


>consensus_5181#1 TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCG TCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTG CCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGT ACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTC CTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGT GGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGA GAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACC CAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCT GCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGA ATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAA CGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACA CTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAG CGAATACAG



consensusID : consensus_5181#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence
                              [ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGCGGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCACGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGGACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTGCGAATCGTTGGATGGTNAGAGTGTG]

[+] EMBL BX619984             [ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGCGGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCACGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGGACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTGCGAATCGTTGGATGGTNAGAGTGTG]


>consensus_5181#2 ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCC GATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGC GGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAA CTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAG CCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAA CGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCT CTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCA CGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGG ACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTG CGAATCGTTGGATGGTNAGAGTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5181#0      CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTG---------A 51
consensus_5181#2      -----------------------------ACAGATCATCGAACAGCACTGTCTTCCAAGA 31
consensus_5181#1      TCCCCCGAGGTT-----AAACACTTCGAGGTAGATCATCGGACAGCACTG---------A 46
                                                     ********* *********         *

consensus_5181#0      TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTA 111
consensus_5181#2      TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTA 91
consensus_5181#1      TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTA 106
                      *********************************************** ******** ***

consensus_5181#0      TTTCGC-TTATCTGCCAGTAATCGTGAGGC-GATAGGTTATAGAGTTTTGCAGCAGAAAT 169
consensus_5181#2      TTTCGC-TTATCTGCCAGTAATCGTGATGC-GGTAGGTTATAGAGCATTTGAGGAGAAAT 149
consensus_5181#1      TTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAAT 166
                      ****** ******************** ** * ************  **  ** ******

consensus_5181#0      CGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGAT 229
consensus_5181#2      CGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGAT 209
consensus_5181#1      CGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGAT 226
                      ******************* **** * * *************** ******* ** ****

consensus_5181#0      CGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGT 289
consensus_5181#2      CGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGT 269
consensus_5181#1      CGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGT 286
                      ******************* ** ** ********************** *** *******

consensus_5181#0      ACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGG 349
consensus_5181#2      ACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGG 329
consensus_5181#1      ACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGG 346
                      ** * ** **************** ********* ****** * *********** ****

consensus_5181#0      GCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 409
consensus_5181#2      GCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 389
consensus_5181#1      GCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 406
                      ***************** ***  *************************************

consensus_5181#0      TTAATCAATGGACTCAGGGTGAACCAAATCATGCTCA-GGTGGGCAACTGTACAGTGGAG 468
consensus_5181#2      TTGATCGGTGGACTCANNGTGAACCCAACCACGGGCN-GGTGAACGATTGTACAGTGGAG 448
consensus_5181#1      TTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAG 466
                      ** ***  ***** **  ******* ** ** *  *  ****  * * ************

consensus_5181#0      CATTGTGTGGTGCTGCAGCACTACCAAAACGG-TCTCG-GTGCTACCTATTCGTTT-GAT 525
consensus_5181#2      CGTTGTGTGGTGCTGCAGCACTACCAAAACGG-ACATG-GTGCTANCTATTCGTTT-GAT 505
consensus_5181#1      CATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGAT 526
                      * ******************************  *  * ****** ******* ** ***

consensus_5181#0      GATAGAGCATGTGAATGGCAAT-ACTATTTCATGTGCGAA-TCCTTAGATT--GTTAGAG 581
consensus_5181#2      GATAGACCATGCGAAAGGGAAT-ACTTTTTCATGTGCGAA-TCGTTGGATG--GTNAGAG 561
consensus_5181#1      GATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAA 586
                      ****** **** *** ** *** *** **** ******** ** ** **    ** * * 

consensus_5181#0      TGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAG 641
consensus_5181#2      TGTG-------------------------------------------------------- 565
consensus_5181#1      NCTGCCAGGAC----TAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGG-GCCTCNA 641
                                                                                  

consensus_5181#0      TTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGA 701
consensus_5181#2      ------------------------------------------------------------
consensus_5181#1      CTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGC-ANNAGCATTCCTA 700
                                                                                  

consensus_5181#0      ATCAAATCTCTTAAAATAAACGAATTGCTAAT 733
consensus_5181#2      --------------------------------
consensus_5181#1      TTCACTACNNCAATCAACAGCGAATACAG--- 729
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)