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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1210 fasta sequence
[CCGGGTCAAGTCGGAGCTCGGGCTGGAGATGGTAAAGCCGAAGGTGTCCTTCCTGCAGCGCTTCACCGCACTGATGGACGTCGGGCTGCTGCGCGACGGCATCTACCTGAACATCCTGTTCGGCCTGTCCATCTTCTACGTCGCGGAGATGAACTTCAAGATGGTGACGCCGTTCTTCATGGCCAGCCTCGGGTTCGACAAGAGCGACACCGCGTTCGTGCTGTCCGTGTCGGCGCTGACCGACATTGCGGCCCGTATCATCGTGCCGCCGATAGGCGATCGGTTGAAGCTGCGCAAACGCTACATCTTCATGGTGTCGCTCGTGTTCGTCGCGATCAGCCGGTCGATTGTTGCCCACCAGCGCACGTACACGGACGTGATGATCTGGCTGTCGGTGACCGGGTTCTTCCGCGGTGTCGCCCTCGCCAACTTTACGCTGTGCGTGTCGGAGTACTCGTCGCTCGAGAAGCTGCCGGCCGCGTTCGGCTGGCACATGGTCGGCAAGGCGCTGTTTGTGATCGCGTTCGGGCCACT-GATCGGTGCGATCCGCGACTGGACGGACAGTTACGCGATCTGCATCCACTCGCAGTCGTTCTGCATCTTTCTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGAAAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTGTGTGTAAGTATATGTGTGTTTGAATGAATGCGTGCGTGTGTAATAATGTAATTAGTAATAATTTTTGACGCAAGTGTGCCGGTCATCGTTTGATCGTATCTTAATTCCGAAGACTGCGATACTAGGGTACGCTATATAGCTGGGTAGGATGAAAATTAGTAGCAAAATACAACCGAGTAAGGGCCTAGGCACGCAAGGATTTAATAATGAGCGAAGGCGCGGAATCCAAAGTCTCTACCGAAAACCTCTTACTAGCGGACAACGGTACTAGTGAGTACTTACAGAGCGCGTTTTAACGACAGGGGAGGAGGAGAGAGCAAAAAAGAAAAGCGTCCAACAGCACAGTATTAGGCGCAGACACGTGTTTGTTTTAGCGAGTAAGCAGCAAGCAGACCAACCACACAGCCTCGAAAAGGGTGATTTTATTGTAAATTGCATGCACGGGACGGACATCAAACGAGGGCCGTTTTCCAATCGAGCTTAGCGATCGT]
[+] EMBL BM657283 [CCGGGTCAAGTCGGAGCTCGGGCTGGAGATGGTAAAGCCGAAGGTGTCCTTCCTGCAGCGCTTCACCGCACTGATGGACGTCGGGCTGCTGCGCGACGGCATCTACCTGAACATCCTGTTCGGCCTGTCCATCTTCTACGTCGCGGAGATGAACTTCAAGATGGTGACGCCGTTCTTCATGGCCAGCCTCGGGTTCGACAAGAGCGACACCGCGTTCGTGCTGTCCGTGTCGGCGCTGACCGACATTGCGGCCCGTATCATCGTGCCGCCGATAGGCGATCGGTTGAAGCTGCGCAAACGCTACATCTTCATGGTGTCGCTCGTGTTCGTCGCGATCAGCCGGTCGATTGTTGCCCACCAGCGCACGTACACGGACGTGATGATCTGGCTGTCGGTGACCGGGTTCTTCCGCGGTGTCGCCCTCGCCAACTTTACGCTGTGCGTGTCGGAGTACTCGTCGCTCGAGAAGCTGCCGGCCGCGTTCGGCTGGCACATGGTCGGCAAGGCGCTGTTTGTGATCGCGTTCGGGCCACTGGATCGGTGCGATCCGCGACTGGACGGACAGCTACGCGATCTGCATCCACTCGCAGTCGTTCTGCATCTTTCTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAG ]
[+] EMBL CNS09B7Y [ CGCTCGTGTTCGTCGCGATCAGCCGGTCGATTGTTGCCCACCAGCGCACGTACACGGACGTGATGATCTGGCTGTCGGTGACCGGGTTCTTCCGCGGTGTCGCCCTCGCCAACTTTACGCTGTGCGTGTCGGAGTACTCGTCGCTCGAGAAGCTGCCGGCCGCGTTCGGCTGGCACATGGTCGGCAAGGCGCTGTTTGTGATCGCGTTCGGGCCACT GATCGGTGCGATCCGCGACTGGACGGACAGTTACGCGATCTGCATCCACTCGCAGTCGTTCTGCATCTTTCTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGAAAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTGTGTGTAAGTATATGTGTGTTTGAATGAATGCGTGCGTGTGTA ]
[+] EMBL CNS09P2N [ CGCGATCAGCCGGTCGATTGTTG CCACCAGCGCACGTACACGGACGTGATGATCTGGCTGTCGGTGACCGGGTTCTTCCGCGGTGTCGCCCTCGCCAACTTTACGCTGTGCGTGTCGGAGTACTCGTCGCTCGAGAAGCTGCCGGCCGCGTTCGGCTGGCACATGGTCGGCAAGGCGCTGTTTGTGATCGCGTTCGGGCCACT GATCGGTGCGATCCGCGACTGGACGGACAGTTACGCGATCTGCATCCACTCGCAGTCGTTCTGCATCTTTCTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGAAAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTGTGTGTAAGTATATGTGTGTGTGAATGAATGCGTGCGTGTGTAATAATGTAATTAGTAATAATTTTTGACGCAAGTGTGCCGGTCATCGTTTGATCGTATCTTAATTCCGAAGACTGCGATACTAGGGTACGCTATATAGCTGGGTAGGATGAAAATTAGTAGCAAAATACAACCGAGTAAGGGCCTAGGCACGCAAGGATTTAATAATGAGCGAAGGCGCGGAATCCAAAGTCTCTACCGAAAACCTCTTACTAGCGGACAACGGTACTAGTGAGTACTTACAGAGCGCGTTTTAACGACAGGGGAGGAGGAGAGAGCAAAAAAGAAAAGCGTCCAACAGCACAGTATTAGGCGCAGACACGTGTTTGTTTTAGCGAGTAAGCAGCAAGCAGACCAACCACACAGCCTCGAAAAGGGTGATTTTATTGTAAATTGCATGCACGGGACGGACATCAAACGAGGGCCGTTTTCCAATCGAGCTTAGCGATCGT]
consensusID : consensus_5187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence
[GCAGAATCCCCCGAGGTTACGATCTGCATCCACTCGCAGTCGTTCTGCATCTTTCTTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGAAAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTGTGTGTGAGTGTATGTGTGTTTGAATGAATGCGTGCGTGTGTAATAATGTAATTAGTAATAATTTTTGACGCAAGTGTGCCGGTCATCGTTTGATCGTATCTTAATTCCGAAGACTGCGATACTAGGGTACGCTATATAGCTGGGTAGGATGAAAATTAGTAGCAAAATACAACCGAGTAAGGGCCTAGGCACGCAAGGATTTAATAATGAGCGAAGGCGCGGAATCCAAAGTCTCTACCGAAAACCTCTTACTAGCGGACAACGGTACTAGTGAGTACTTACAGAGCGCGTTTTAACGACAGGGGCAGGAGGAGAGAGCAAAAAAGAAAAGCGTCCAACAGCACAGTATTAGGCGCAGACACGTGTTTGTTTTAGCGAGTAAGCAGCAAGCAGACCAACCACACAGCCTCGAAAAGCGGTGATTTTATTGTAAATTGCATGCACTGGGACGGACATCAAACGAGGGCCGTTTTCCAACTCGAGCAAAGCGATCGTACATTGCCGGTGAGGTTTCNACAAAAAAACGAGGAAGCTTCAAATACAAAACTGGTCGAATAGAAGGAAAAGCGAGCGGTGTTAGGA]
[+] EMBL AL695030 [GCAGAATCCCCCGAGGTTACGATCTGCATCCACTCGCAGTCGTTCTGCATCTTTCTTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGAAAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTGTGTGTGAGTGTATGTGTGTTTGAATGAATGCGTGCGTGTGTAATAATGTAATTAGTAATAATTTTTGACGCAAGTGTGCCGGTCATCGTTTGATCGTATCTTAATTCCGAAGACTGCGATACTAGGGTACGCTATATAGCTGGGTAGGATGAAAATTAGTAGCAAAATACAACCGAGTAAGGGCCTAGGCACGCAAGGATTTAATAATGAGCGAAGGCGCGGAATCCAAAGTCTCTACCGAAAACCTCTTACTAGCGGACAACGGTACTAGTGAGTACTTACAGAGCGCGTTTTAACGACAGGGGCAGGAGGAGAGAGCAAAAAAGAAAAGCGTCCAACAGCACAGTATTAGGCGCAGACACGTGTTTGTTTTAGCGAGTAAGCAGCAAGCAGACCAACCACACAGCCTCGAAAAGCGGTGATTTTATTGTAAATTGCATGCACTGGGACGGACATCAAACGAGGGCCGTTTTCCAACTCGAGCAAAGCGATCGTACATTGCCGGTGAGGTTTCNACAAAAAAACGAGGAAGCTTCAAATACAAAACTGGTCGAATAGAAGGAAAAGCGAGCGGTGTTAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5187#0 CCGGGTCAAGTCGGAGCTCGGGCTGGAGATGGTAAAGCCGAAGGTGTCCTTCCTGCAGCG 60
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 CTTCACCGCACTGATGGACGTCGGGCTGCTGCGCGACGGCATCTACCTGAACATCCTGTT 120
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 CGGCCTGTCCATCTTCTACGTCGCGGAGATGAACTTCAAGATGGTGACGCCGTTCTTCAT 180
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 GGCCAGCCTCGGGTTCGACAAGAGCGACACCGCGTTCGTGCTGTCCGTGTCGGCGCTGAC 240
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 CGACATTGCGGCCCGTATCATCGTGCCGCCGATAGGCGATCGGTTGAAGCTGCGCAAACG 300
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 CTACATCTTCATGGTGTCGCTCGTGTTCGTCGCGATCAGCCGGTCGATTGTTGCCCACCA 360
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 GCGCACGTACACGGACGTGATGATCTGGCTGTCGGTGACCGGGTTCTTCCGCGGTGTCGC 420
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 CCTCGCCAACTTTACGCTGTGCGTGTCGGAGTACTCGTCGCTCGAGAAGCTGCCGGCCGC 480
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 GTTCGGCTGGCACATGGTCGGCAAGGCGCTGTTTGTGATCGCGTTCGGGCCACTGATCGG 540
consensus_5187#1 ------------------------------------------------------------
consensus_5187#0 TGCGATCCGCGACTGGACGGACAGTTACGCGATCTGCATCCACTCGCAGTCGTTCTGCAT 600
consensus_5187#1 --------GCAGAATCCCCCGAGGTTACG--ATCTGCATCCACTCGCAGTCGTTCTGCAT 50
** * ****** *****************************
consensus_5187#0 CTTTCT-GTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGA 659
consensus_5187#1 CTTTCTTGTGCGTGACCGCCTGGTCGATCGAGCTGCTGGTGAAGCGCTGCCGCACGAAGA 110
****** *****************************************************
consensus_5187#0 AAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTG 719
consensus_5187#1 AAATCGTCGAGGCGAACCCGACCGTATAGAGCGCGTGCGTGGATGTAAGTGGAGAGTGTG 170
************************************************************
consensus_5187#0 TGTGTAAGTATATGTGTGTTTGAATGAATGCGTGCGTGTGTAATAATGTAATTAGTAATA 779
consensus_5187#1 TGTGTGAGTGTATGTGTGTTTGAATGAATGCGTGCGTGTGTAATAATGTAATTAGTAATA 230
***** *** **************************************************
consensus_5187#0 ATTTTTGACGCAAGTGTGCCGGTCATCGTTTGATCGTATCTTAATTCCGAAGACTGCGAT 839
consensus_5187#1 ATTTTTGACGCAAGTGTGCCGGTCATCGTTTGATCGTATCTTAATTCCGAAGACTGCGAT 290
************************************************************
consensus_5187#0 ACTAGGGTACGCTATATAGCTGGGTAGGATGAAAATTAGTAGCAAAATACAACCGAGTAA 899
consensus_5187#1 ACTAGGGTACGCTATATAGCTGGGTAGGATGAAAATTAGTAGCAAAATACAACCGAGTAA 350
************************************************************
consensus_5187#0 GGGCCTAGGCACGCAAGGATTTAATAATGAGCGAAGGCGCGGAATCCAAAGTCTCTACCG 959
consensus_5187#1 GGGCCTAGGCACGCAAGGATTTAATAATGAGCGAAGGCGCGGAATCCAAAGTCTCTACCG 410
************************************************************
consensus_5187#0 AAAACCTCTTACTAGCGGACAACGGTACTAGTGAGTACTTACAGAGCGCGTTTTAACGAC 1019
consensus_5187#1 AAAACCTCTTACTAGCGGACAACGGTACTAGTGAGTACTTACAGAGCGCGTTTTAACGAC 470
************************************************************
consensus_5187#0 AGGGG-AGGAGGAGAGAGCAAAAAAGAAAAGCGTCCAACAGCACAGTATTAGGCGCAGAC 1078
consensus_5187#1 AGGGGCAGGAGGAGAGAGCAAAAAAGAAAAGCGTCCAACAGCACAGTATTAGGCGCAGAC 530
***** ******************************************************
consensus_5187#0 ACGTGTTTGTTTTAGCGAGTAAGCAGCAAGCAGACCAACCACACAGCCTCGAAAAG-GGT 1137
consensus_5187#1 ACGTGTTTGTTTTAGCGAGTAAGCAGCAAGCAGACCAACCACACAGCCTCGAAAAGCGGT 590
******************************************************** ***
consensus_5187#0 GATTTTATTGTAAATTGCATGCAC-GGGACGGACATCAAACGAGGGCCGTTTTCCAA-TC 1195
consensus_5187#1 GATTTTATTGTAAATTGCATGCACTGGGACGGACATCAAACGAGGGCCGTTTTCCAACTC 650
************************ ******************************** **
consensus_5187#0 GAGCTTAGCGATCGT--------------------------------------------- 1210
consensus_5187#1 GAGCAAAGCGATCGTACATTGCCGGTGAGGTTTCNACAAAAAAACGAGGAAGCTTCAAAT 710
**** *********
consensus_5187#0 ------------------------------------------
consensus_5187#1 ACAAAACTGGTCGAATAGAAGGAAAAGCGAGCGGTGTTAGGA 752
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||