These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1247 fasta sequence [CCGCGCACCTTGTTTACAACGCTCCACAAATCGTAGTTGGCACCTTTCGTCGCAACATTTCCTGTTGCTGCGTGTTGTAAAATAAAAACGGTGAAAAACTCGACCCAAAAGACGGGCAACGGTGGTGAGAGCGAAAGGAAACACACACACACAGAGCGATGGAGGACTTTCAGAAGATTGAAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTGAGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCCACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGACGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCC-GAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCCGCGATGGTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGGGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCTGGTCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTTCAGGGTGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGTATACTGCGCACGCCGACGGATGACATCTGGCCGGGGGTGACCTCGCTGCCGGACTACAAATCATCCTTCCCTTGCTGGACGCAGAACAATCTCGCTAGTCAGGTGTCGAATCTGGATTCGGCCGGTATCGATCTGCTGCAGAAGTGCCTTATCTACGATCCGATGCTGCGCATCTCGGCGAAGAAGATCCTCGAGCACAAGTACTTCGATGGGTTCGAGCGGTGCAACATCCCGACGGAGTAATTTTAATTCCCCGTTTTCTTCTCCCCCTCTTGCGCTGTCAGGTGTTTTGCCATTCCTTTCCACTTCTTTTTTCTCTCTCTCTCTCCAAGGTGCGCTCGTGAATTACGTTACTGAATTTGCGCGCGAGTTTGTGCTTGTGTGTTTGTCCGCGTGTGCCGAATTATTAGGAATTATTACTGTACATTTTTACACA] [+] EMBL BM598711 [CCGCGCACCTTGTTTACAACGCTCCACAAATCGTAGTTGGCACCTTTCGTCGCAACATTTCCTGTTGCTGCGTGTTGTAAAATAAAAACGGTGAAAAACTCGACCCAAAAGACGGGCAACGGTGGTGAGAGCGAAAGGAAACACACACACACAGAGCGATGGAGGACTTTCAGAAGATTGAAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTGAGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCCACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGACGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCC GAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCCGCGATGGTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGG ] [+] EMBL BM616667 [ ccGGAGGACTTTCAGAAGATTGAAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTGAGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCGACTGCGATCAGAGAGATCTCCCTGCTGAAGGAACTGAAGCACCGGAACGTGGTATCGCTGAAGGATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCCGCGATGCTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCGATTTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCTGGTCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTTCAGGGTGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGTATACTGCGCACGCCGACGGATGACA ] [-] EMBL BM604432 [ GGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCTGGTCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTCCAGGGCGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGCATACTGCGCACGCCGACGGATGACATCTGGCCGGGGGTGACCTCGCTGCCGGACTACAAATCATCCTTCCCTTGCTGGACGCAGAACAATCTCGCTAGTCAGGTGTCGAATCTGGATTCGGCCGGTATCGATCTGCTGCAGAAGTGCCTTATCTACGATCCGATGCTGCGCATCTCGGCGAAGAAGATCCTCGAGCACAAGTACTTCGATGGGTTCGAGCGGTGCAACATCCCGACGGAGTAATTTTAATTCCCCGTTTTCTTCTCCCCCTCTTGCGCTGTCAGGTGTTTTGCCATTCCTTTCCACTTCTTTTTTCTCTCTCTCTCTCCAAGGTGCGCTCGTGAATTACGTTACTGAATTTGCGCGCGAGTTTGTGCTTGTGTGTTTGTCCGCGTGTGCCGAATTATTAGGAATTATTACTGTACATTTTTACACA] consensusID : consensus_5192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [CCCGAGGTTAAGGACGAGGGCATCCCATCGACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCGCGATGCTGTTCTGTCACCGTCGGCGCGTCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGGCCCGTGGACATCTGGGTCGATTGGGTGTATCTTTGCCGAGATGGTACCCGGAAGCCACTGTTCCAGGGGCGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGATACTGGGCA] [+] EMBL AL695208 [CCCGAGGTTAAGGACGAGGGCATCCCATCGACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCGCGATGCTGTTCTGTCACCGTCGGCGCGTCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGGCCCGTGGACATCTGGGTCGATTGGGTGTATCTTTGCCGAGATGGTACCCGGAAGCCACTGTTCCAGGGGCGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGATACTGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5192#0 CCGCGCACCTTGTTTACAACGCTCCACAAATCGTAGTTGGCACCTTTCGTCGCAACATTT 60 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 CCTGTTGCTGCGTGTTGTAAAATAAAAACGGTGAAAAACTCGACCCAAAAGACGGGCAAC 120 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 GGTGGTGAGAGCGAAAGGAAACACACACACACAGAGCGATGGAGGACTTTCAGAAGATTG 180 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 AAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTG 240 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 AGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCCACTG 300 consensus_5192#1 --------------------------CCCGAGGTTAAGGACGAGGGCATCCCATCGACTG 34 * ** ******************* **** consensus_5192#0 CGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGG 360 consensus_5192#1 CGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGG 94 ************************************************************ consensus_5192#0 ACGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGA 420 consensus_5192#1 ATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGA 154 * ********************************************************** consensus_5192#0 AGAAGTACATGGACAGCCTGCCGCCG-AGAAGATGATCGATGCGGATCTGGTCAAGAGCT 479 consensus_5192#1 AGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCT 214 ************************** ********************************* consensus_5192#0 ACATGTATCAGATCACGGCCGCGATGGTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCG 539 consensus_5192#1 ACATGTATCAGATCACGGC-GCGATGCTGTTCTGTCACCGTCGGCGCGTC-TGCACCGCG 272 ******************* ****** *********************** ********* consensus_5192#0 ATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTG 599 consensus_5192#1 ATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTG 332 ************************************************************ consensus_5192#0 GGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGT 659 consensus_5192#1 GGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGT 392 ************************************************************ consensus_5192#0 GGTACCGGGGGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCT 719 consensus_5192#1 GGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGGCCCGTGGACATCT 452 ********* ************************************ ************* consensus_5192#0 GG-TCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTTCAGGG-TGA 777 consensus_5192#1 GGGTCGATTGGGTGTATCTTTGCCGAGATGGT-ACCCGGAAGCCACTGTTCCAGGGGCGA 511 ** **************************** ***************** ***** ** consensus_5192#0 TTCGGAGATCGATCAGCTGTTCCGGATGTTCCGTATACTGCGCACGCCGACGGATGACAT 837 consensus_5192#1 TTCGGAGATCGATCAGCTGTTCCGGATGTTCCG-ATACTGGGCA---------------- 554 ********************************* ****** *** consensus_5192#0 CTGGCCGGGGGTGACCTCGCTGCCGGACTACAAATCATCCTTCCCTTGCTGGACGCAGAA 897 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 CAATCTCGCTAGTCAGGTGTCGAATCTGGATTCGGCCGGTATCGATCTGCTGCAGAAGTG 957 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 CCTTATCTACGATCCGATGCTGCGCATCTCGGCGAAGAAGATCCTCGAGCACAAGTACTT 1017 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 CGATGGGTTCGAGCGGTGCAACATCCCGACGGAGTAATTTTAATTCCCCGTTTTCTTCTC 1077 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 CCCCTCTTGCGCTGTCAGGTGTTTTGCCATTCCTTTCCACTTCTTTTTTCTCTCTCTCTC 1137 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 TCCAAGGTGCGCTCGTGAATTACGTTACTGAATTTGCGCGCGAGTTTGTGCTTGTGTGTT 1197 consensus_5192#1 ------------------------------------------------------------ consensus_5192#0 TGTCCGCGTGTGCCGAATTATTAGGAATTATTACTGTACATTTTTACACA 1247 consensus_5192#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||