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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1243 fasta sequence
[CCTCCGTCACTATTATTTGTACTCGTTTGTTTTTTTTTAGTAGGAATTTTATTTTTCAGACTCTTTATACAAAGTGCCAAAGCATTTGCCTCGTAAATCGGTGTACCAACAGTGACCATGGCATTGTGCAATCCGTTCAGTGTTGCCACGGGAGAATACAAGAACAGTCAGCC--GTACTGCCCAGGGGAGCCACTATTTCCAGCGTATTCACACGCTGCGGATAGTAGCACCAACAGCAGCAACAACAACTACAACAGCAACGTGGGTGGTCTTTCTGACTTCAGCTACAACTCCATCACGACCACCCCCACCGATGCAAGCATTAGCACCACTG-CTATCTGCGCCGCCAGCACTCCGCTGTACGAAGC-AGGGTCAGCTCGCCGTAAGCTGTTCAAAAAAACGCCCAAACCACAGCAGCTCTCCAAGCTGGCCAGTGTGCTGAAACCGTACAGCTCCGGTCTCGCGTTGCACAATGTACTCAGCCCAGCCATGCCGGAGATCACCGTCGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAGATCGTCGTCAATGCGACCCGCTACGAAGCGATC-GGGCAGAACAAAAAGATAGCGAAAGCTAA-TGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGG--GGCGACGAGGAGCAGCAGCTTGACGAAG-CG-AGCCAAACTCCTACGAAGCGTTGCTGATGACGAATGTGACCTC-GTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTGAACTGGCAGCCGACCGTTTCGAGCCCGACGGCCGACGGCATCAAGATCCGGTCCCAGCTTCCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGC-CGCAG--AAAGTTCGAGGATGATGGAGTAAAGAT-CTCGGGT-CACGGATCA-AAGATCTACAAGGCACGGGCACGGGTACACGAGCAGTGCTTTTTCGGCACGGGGTCGTCGAAAAAGTTGGCCCGCGTGGCGGCAGCAAAGGACGCGTGCAAGACACTGTTCGGGGTTGAGTACTAGAATTTGACGAAATTATTACCTCCGGAGGTATTTGGCAGCAAAGTGGAAAGGAAGTGTTTTTTTAGTGTTAGATACACTATTAGCCTTCTCGTCTGGATTACGAATACGAACTACAGTGACGAATAATGTTTATCGTTAGTTTTTACATCAATTCCAAACTGAACTGAAATTCAATTTA]
[+] EMBL CNS08WZZ [CCTCCGTCACTATTATTTGTACTCGTTTGTTTTTTTTTAGTAGGAATTTTATTTTTCAGACTCTTTATACAAAGTGCCAAAGCATTTGCCTCGTAAATCGGTGTACCAACAGTGACCATGGCATTGTGCAATCCGTTCAGTGTTGCCACGGGAGAATACAAGAACAGTCAGCC GTACTGCCCAGGGGAGCCACTATTTCCAGCGTATTCACACGCTGCGGATAGTAGCACCAACAGCAGCAACAACAACTACAACAGCAACGTGGGTGGTCTTTCTGACTTCAGCTACAACTCCATCACGACCACCCCCACCGATGCAAGCATTAGCACCACTG CTATCTGCGCCGCCAGCACTCCGCTGTACGAAGC AGGGTCAGCTCGCCGTAAGCTGTTCAAAAAAACGCCCAAACCACAGCAGCTCTCCAAGCTGGCCAGTGTGCTGAAACCGTACAGCTCCGGTCTCGCGTTGCACAATGTACTCAGCCCAGCCATGCCGGAGATCACCGTCGCCAAGTTGCGGGATCTTGAATTCAAGGCGGAGATCGTCGTCAATGCGACCCGCTACGAAGCGATCGGGGCAGAACAAAAAGATAGCGAAAGCTAA TGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGGGCGGCGACGAGGAGCAGCAGCTTGACGAAG CGAAGCCAAACTCCTACGAAGCGTTGCTGATGACGAATGTGACCTC GTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTGAACTGGCAGCCGACCGTTTCGAGCCCGACGGCCGACGGCATCAAGATCCGGTCCCAGCTTCCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGC CGCAG AAAGTTCGAGGATGATGGAGTAAAGAT CTCGGGT CACGGATCA AAGATCTA ]
[+] EMBL CNS08N63 [ TCCGTCACTATTATTTGTACTCGTTTGTTTTTTTTTAGTAGGAATTTTATTTTTCAGACTCTTTATACAAAGTGCCAAAGCATTTGCCTCGTAAATCGGTGTACCAACAGTGACCATGGCATTGTGCAATCCGTTCAGTGTTGCCACGGGAGAATACAAGAACAGTCAGCCCGGTACTGCCCAGGGGAGCCACTATTTCCAGCGTATTCACACGCTGCGAATAGTAGCACCAACAGCAGCAACAACAACTACAACAGCAACGTGGGTGGTCTTTCTGACTTCAGCTACAACTCCATCACGACCACCCCCACCGATGCAAGCATTAGCACCACTGACTATCTGCGCCGCCAGCACTCCGCTGTACGAAGCTAGGGTCAGCTCGCCGTAAGCTGTTCAAAAAAACGCCCAAACCACAGCAGCTCTCCAAGCTGGCCAGTGTGCTGAAACCGTACAGCTCCGAAAAAAAGTTGCACAATGTACTCAGCCCAGCCATGCCGGAGATCACCGTCGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAGATCGTCGTCAATGCGACCCGCTACGAAGCGATC GGGCAGAACAAAAAGATAGCGAAA CTAAGTGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGG GGCGACGAGGAGCAGCAGCTTGACGAAG CG AGCCAAACTCCTACGAAGCGTTGCTGATGACGAATGTGACCTC GTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTGAACTGGCAGCCGACCGTTTCGAGCCCGACGGCCGACGG ]
[-] EMBL CNS08X00 [ GCACCACTG CTATCTGCGCCGCCAGCACTCCGCTGTACGAAGC AGGGTCAGCTCGCCGTAAGCTGTTCAAAAAAACGCCCAAACCACAGCAGCTCTCCAAGCTGGCCAGTGTGCTGAAACCGTACAGCTCCGGTCTCGC TTGCACAATGTACTCAGCCCAGCCATGCCGGAGATCACCGTCGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAGATCGTCGTCAATGCGACCCGCTACGAAGCGATC GGGCAGAACAAAAAGATAGCGAAAGCTAA TGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGG GGCGACGAGGAGCAGCAGCTTGACGAAGTCG AGCCAAACTCCTACGAAGCGTTGCTGATGACGAATGTGACCTCAAATTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTGAACTGGCAGCCGACCGTTTCGAGCCCGACGGCCGACGGCATCAAGATCCGGTCCCAGCTTCCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGCGCGCAGGCGAAGTTCGAGGATGATGGAGTAAAGATCCTCGGGTCCACGGATCAGAAGATCTACAAGGCACGGGCACGGGTACACGAGCAGTGCTTTTTCGGCACGGGGTCGTCGAAAAAGTTGGCCCGCGTGGCGGCAGCAAAGGACGCGTGCAAGACACTGTTCGGGGTTGAGTACTAGAATTTGACGAAATTATTACCTCCGGAGGTATTTGGCAGCAAAGTGGAAAGGAAGTGTTTTTTTAGTGTTAGATACACTATTAGCCTTCTCGTCTGGATTACGAATACGAACTACAGTGACGAATAATGTTTATCGTTAGTTTTTACATCAATTCCAAACTGAACTGAAATTCAATTTA]
consensusID : consensus_5193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence
[CGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAGATCGTCGTCAATGCGACCCGCTACGAAGCGATCGGGCAGAACAAAAAGATAGCGAAAGCTAATGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGGGGCGACGAGGAGCAGCAGCTTGACGAAGTCGAGCCAAACTCCTACGAAGCGTTGCTGATGACGAATGTGACCTCGTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTGAACTGGCAGCCGACCGTTTCGTTTTTTTTTTTTTTCGGCATCAAGATCCGGTCCCAGCTTCCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGCCGCAGGCGAAGTTCGAGGATGATGGAGTAAAGATCCTCGGGTCCACGGATCAGAAGATCTACAAGGCACGGGCACGGGTACACGAGCAGTGCTTTTTCGGCACGGGGTCGTCGAAAAAGTTGGCCCCGTGGCGGCAGCAAAGGACGCGTGCAAGACACTGTTCGGGGTTGAGTACTAGAATTTGACGAAATTATTACCTCCGGAGGTATTTGGCAGCAAAGTGGAAAGGAAGTGTTTTTTTAGTGTTAGATACACTATTAGCCTTCTCGTCTGGATTACGAATACGAACTACAGTGACGAATAATGTTTATCGTTAGTTTTTACATCAATTCCAAACTGAACTGAAATTCAATTTAAATAAAACTTTACCATCACGTGCA]
[-] EMBL CNS08N64 [CGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAGATCGTCGTCAATGCGACCCGCTACGAAGCGATCGGGCAGAACAAAAAGATAGCGAAAGCTAATGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGGGGCGACGAGGAGCAGCAGCTTGACGAAGTCGAGCCAAACTCCTACGAAGCGTTGCTGATGACGAATGTGACCTCGTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTGAACTGGCAGCCGACCGTTTCGTTTTTTTTTTTTTTCGGCATCAAGATCCGGTCCCAGCTTCCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGCCGCAGGCGAAGTTCGAGGATGATGGAGTAAAGATCCTCGGGTCCACGGATCAGAAGATCTACAAGGCACGGGCACGGGTACACGAGCAGTGCTTTTTCGGCACGGGGTCGTCGAAAAAGTTGGCCCCGTGGCGGCAGCAAAGGACGCGTGCAAGACACTGTTCGGGGTTGAGTACTAGAATTTGACGAAATTATTACCTCCGGAGGTATTTGGCAGCAAAGTGGAAAGGAAGTGTTTTTTTAGTGTTAGATACACTATTAGCCTTCTCGTCTGGATTACGAATACGAACTACAGTGACGAATAATGTTTATCGTTAGTTTTTACATCAATTCCAAACTGAACTGAAATTCAATTTAAATAAAACTTTACCATCACGTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5193#0 CCTCCGTCACTATTATTTGTACTCGTTTGTTTTTTTTTAGTAGGAATTTTATTTTTCAGA 60
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 CTCTTTATACAAAGTGCCAAAGCATTTGCCTCGTAAATCGGTGTACCAACAGTGACCATG 120
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 GCATTGTGCAATCCGTTCAGTGTTGCCACGGGAGAATACAAGAACAGTCAGCCGTACTGC 180
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 CCAGGGGAGCCACTATTTCCAGCGTATTCACACGCTGCGGATAGTAGCACCAACAGCAGC 240
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 AACAACAACTACAACAGCAACGTGGGTGGTCTTTCTGACTTCAGCTACAACTCCATCACG 300
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 ACCACCCCCACCGATGCAAGCATTAGCACCACTGCTATCTGCGCCGCCAGCACTCCGCTG 360
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 TACGAAGCAGGGTCAGCTCGCCGTAAGCTGTTCAAAAAAACGCCCAAACCACAGCAGCTC 420
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 TCCAAGCTGGCCAGTGTGCTGAAACCGTACAGCTCCGGTCTCGCGTTGCACAATGTACTC 480
consensus_5193#1 ------------------------------------------------------------
consensus_5193#0 AGCCCAGCCATGCCGGAGATCACCGTCGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAG 540
consensus_5193#1 --------------------------CGCCAAGCAGCGGGATCTTGAATTCAAGGCGGAG 34
**********************************
consensus_5193#0 ATCGTCGTCAATGCGACCCGCTACGAAGCGATCGGGCAGAACAAAAAGATAGCGAAAGCT 600
consensus_5193#1 ATCGTCGTCAATGCGACCCGCTACGAAGCGATCGGGCAGAACAAAAAGATAGCGAAAGCT 94
************************************************************
consensus_5193#0 AATGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGGGGCGAC 660
consensus_5193#1 AATGTGTCCGAGATGGTGCTGCGTGACCTTTGTTTGCAACATTTGTCGGCGCGGGGCGAC 154
************************************************************
consensus_5193#0 GAGGAGCAGCAGCTTGACGAAG-CGAGCCAAACTCCTACGAAGCGTTGCTGATGACGAAT 719
consensus_5193#1 GAGGAGCAGCAGCTTGACGAAGTCGAGCCAAACTCCTACGAAGCGTTGCTGATGACGAAT 214
********************** *************************************
consensus_5193#0 GTGACCTCGTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTG 779
consensus_5193#1 GTGACCTCGTTTGCCGTCCACAAACTGCTTGAGGAGTGGAACGCGAGCCTGCTGGCTGTG 274
************************************************************
consensus_5193#0 AACTGGCAGCCGACCGTTTCGAGCCCGACGGCCGACGGCATCAAGATCCGGTCCCAGCTT 839
consensus_5193#1 AACTGGCAGCCGACCGTTTCGTTTTTTTTTTTTTTCGGCATCAAGATCCGGTCCCAGCTT 334
********************* *************************
consensus_5193#0 CCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGCCGCAGA-- 897
consensus_5193#1 CCACCGAATCCGACCAGCTACGTTCCGACCTCGCTGCTGGTGTTCATGGTGCCGCAGGCG 394
*********************************************************
consensus_5193#0 AAGTTCGAGGATGATGGAGTAAAGATC-TCGGGTC-ACGGATCA-AAGATCTACAAGGCA 954
consensus_5193#1 AAGTTCGAGGATGATGGAGTAAAGATCCTCGGGTCCACGGATCAGAAGATCTACAAGGCA 454
*************************** ******* ******** ***************
consensus_5193#0 CGGGCACGGGTACACGAGCAGTGCTTTTTCGGCACGGGGTCGTCGAAAAAGTTGGCCCGC 1014
consensus_5193#1 CGGGCACGGGTACACGAGCAGTGCTTTTTCGGCACGGGGTCGTCGAAAAAGTTGGCCC-C 513
********************************************************** *
consensus_5193#0 GTGGCGGCAGCAAAGGACGCGTGCAAGACACTGTTCGGGGTTGAGTACTAGAATTTGACG 1074
consensus_5193#1 GTGGCGGCAGCAAAGGACGCGTGCAAGACACTGTTCGGGGTTGAGTACTAGAATTTGACG 573
************************************************************
consensus_5193#0 AAATTATTACCTCCGGAGGTATTTGGCAGCAAAGTGGAAAGGAAGTGTTTTTTTAGTGTT 1134
consensus_5193#1 AAATTATTACCTCCGGAGGTATTTGGCAGCAAAGTGGAAAGGAAGTGTTTTTTTAGTGTT 633
************************************************************
consensus_5193#0 AGATACACTATTAGCCTTCTCGTCTGGATTACGAATACGAACTACAGTGACGAATAATGT 1194
consensus_5193#1 AGATACACTATTAGCCTTCTCGTCTGGATTACGAATACGAACTACAGTGACGAATAATGT 693
************************************************************
consensus_5193#0 TTATCGTTAGTTTTTACATCAATTCCAAACTGAACTGAAATTCAATTTA----------- 1243
consensus_5193#1 TTATCGTTAGTTTTTACATCAATTCCAAACTGAACTGAAATTCAATTTAAATAAAACTTT 753
*************************************************
consensus_5193#0 -------------
consensus_5193#1 ACCATCACGTGCA 766
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||