cluster # 5212

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5212 cluster # 5212 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5212#0 length = 936 sequences # 1

consensus_5212#1 length = 784 sequences # 3

consensusID : consensus_5212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 936
fasta sequence

                              [CGNGGTTTATTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCCGGCTCGAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCATACGAACGAGCGGCAACAACGATGCGGGCAGTGGTGGGGGCAACAGTATACTGCCGGAATNTTCGCTGTCCGACACGCAGAATTTNGATTTGCCAACTTGCATGGAATCGCTACAGAAATCCGTGTACGACTGCCAACAGCCATAGTACAGCACGGGAGCCGAGCCAGTATCCCGCCCGGGCCACNGAAATAGACTTAACGGCGACATTCCCGGATNCNACCGGACNGCAATNTNGGGCAGAGNAACAGGCTTGGGNNAACGTTGGGTTAGGGTAGGNGGGGAACAAAGTTTGGCTAGTCCNGGGTANAGAGACTCAAATATCCCCCTGTNCCANGATAAGACAAATTACGNGTACCCAANAGCCCCGGACAACTTGCCCTTGCCCTTCTNAATNGGGTAATTCTCCCTAAGCGAGTATCCTCNCTTCCCATCGCCCACGACCAAGNCAGGCCACNGNNCAAATTGNGTGANATACAACNCACACTAGTAGGGAGCATAGTAGGGACTAGTAGCCCTCTACANGGATGAGNAGANCCAACGACACGTCAACTAGGCGGGAAAAACAANACNACAAAGATNGGCCCCNCCGGCAACAGTNNGACGGACTGACAACCCCCAAATCACACATNGGTANTCACCGGCAGGGGCACCCACCGTGCACACAAACGTGGGGGCGTCCCAAGCGAAAACCATTTGCGCACAACACCACAAACGGCCCACANCCATANCATTAGTGGCACGACCANGAAACATTCCCCCCCGGNCAACAACCAAACTTAGNGATAACACACCCAAGCGACGGNAGCCCCCCAACGGCACAACAGCGCAACA]

[+] EMBL AL695581             [CGNGGTTTATTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCCGGCTCGAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCATACGAACGAGCGGCAACAACGATGCGGGCAGTGGTGGGGGCAACAGTATACTGCCGGAATNTTCGCTGTCCGACACGCAGAATTTNGATTTGCCAACTTGCATGGAATCGCTACAGAAATCCGTGTACGACTGCCAACAGCCATAGTACAGCACGGGAGCCGAGCCAGTATCCCGCCCGGGCCACNGAAATAGACTTAACGGCGACATTCCCGGATNCNACCGGACNGCAATNTNGGGCAGAGNAACAGGCTTGGGNNAACGTTGGGTTAGGGTAGGNGGGGAACAAAGTTTGGCTAGTCCNGGGTANAGAGACTCAAATATCCCCCTGTNCCANGATAAGACAAATTACGNGTACCCAANAGCCCCGGACAACTTGCCCTTGCCCTTCTNAATNGGGTAATTCTCCCTAAGCGAGTATCCTCNCTTCCCATCGCCCACGACCAAGNCAGGCCACNGNNCAAATTGNGTGANATACAACNCACACTAGTAGGGAGCATAGTAGGGACTAGTAGCCCTCTACANGGATGAGNAGANCCAACGACACGTCAACTAGGCGGGAAAAACAANACNACAAAGATNGGCCCCNCCGGCAACAGTNNGACGGACTGACAACCCCCAAATCACACATNGGTANTCACCGGCAGGGGCACCCACCGTGCACACAAACGTGGGGGCGTCCCAAGCGAAAACCATTTGCGCACAACACCACAAACGGCCCACANCCATANCATTAGTGGCACGACCANGAAACATTCCCCCCCGGNCAACAACCAAACTTAGNGATAACACACCCAAGCGACGGNAGCCCCCCAACGGCACAACAGCGCAACA]




>consensus_5212#0
CGNGGTTTATTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCCGGCTCG
AAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCATACGAACGAGCGGCAA
CAACGATGCGGGCAGTGGTGGGGGCAACAGTATACTGCCGGAATNTTCGCTGTCCGACAC
GCAGAATTTNGATTTGCCAACTTGCATGGAATCGCTACAGAAATCCGTGTACGACTGCCA
ACAGCCATAGTACAGCACGGGAGCCGAGCCAGTATCCCGCCCGGGCCACNGAAATAGACT
TAACGGCGACATTCCCGGATNCNACCGGACNGCAATNTNGGGCAGAGNAACAGGCTTGGG
NNAACGTTGGGTTAGGGTAGGNGGGGAACAAAGTTTGGCTAGTCCNGGGTANAGAGACTC
AAATATCCCCCTGTNCCANGATAAGACAAATTACGNGTACCCAANAGCCCCGGACAACTT
GCCCTTGCCCTTCTNAATNGGGTAATTCTCCCTAAGCGAGTATCCTCNCTTCCCATCGCC
CACGACCAAGNCAGGCCACNGNNCAAATTGNGTGANATACAACNCACACTAGTAGGGAGC
ATAGTAGGGACTAGTAGCCCTCTACANGGATGAGNAGANCCAACGACACGTCAACTAGGC
GGGAAAAACAANACNACAAAGATNGGCCCCNCCGGCAACAGTNNGACGGACTGACAACCC
CCAAATCACACATNGGTANTCACCGGCAGGGGCACCCACCGTGCACACAAACGTGGGGGC
GTCCCAAGCGAAAACCATTTGCGCACAACACCACAAACGGCCCACANCCATANCATTAGT
GGCACGACCANGAAACATTCCCCCCCGGNCAACAACCAAACTTAGNGATAACACACCCAA
GCGACGGNAGCCCCCCAACGGCACAACAGCGCAACA

consensusID : consensus_5212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 784
fasta sequence

                              [CCGCGATATTTTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCGGGCTCGAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCACCGAACGAGCGGCAACAACGATGCGGGCAGTGGTGGGGGCAACAGCACTGCAGGAATTTCGCTGTCCGACACGCAGAATTTGATTGCCAACTTGATGGAATCGCTACAGAAATCCGTGTCCGACGCCAACAGCCATAGTACAGCGGGAGCGGGCAGTGCCGCCGGCAGCAATAGCTACGCGAATCCGATCACGACGATTGGCGGTAGTGCTGGTAGTGGTGGTGGGGAAAGTGCTGTCGGTAAAACAATTCCCGGCAAGATAACATCGGCCACGCCGAATGCCTCCTCTATGTATCCGGGCTTCCCTCAGCAACAGCAGCAGCATGGTCAATCCATGGGAATGGGCATGCCCTTCGGTGGACAGCAGGGACAGATGCCGATGGGACAAATGTCCGGGCCGCAAGGGCAGATGCAACAGCAATTTGGCAATCCTTACATGTACCAGGGCCAGCAGATGTTCGGTGCGAATGGTCCCGGCCCGCAGCAGATGCAACAGTTTGGCGGTTACGGTAACTACGGATACTATTAGACTAGTTGGCAGATTTATATAGGACAGAGCATCAGAGTGAATAAGTAAAGTTTCGGTATTACGCATATGTAAACTTAACTCACTTTCGATGGGAAACAGATATTGATGTATAAAACAAAATGAATGAATCACCATAAATACATGATCGAT]

[+] EMBL BM613598             [CCGCGATATTTTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCGGGCTCGAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCACCGAACGAGCGGCAACAACGATGCGGGCAGTGGTGGGGGCAACAGCTCTGCAGGAATTTCTCTGTCCGACACGCAGAATTTGATTGCCAACTTGATGGAATCGCTACAGAAATCCGTGTCCGACGCCAACAGCCATAGTACAGCGGGAGCGGGCAGTGCCGCCGGCAGCAATAGCTACGCGAATCCGATCACGACGATTGGCGGGACAGCTGGTAGTGGTGGTGGGGAAAGTGCTGTCGGTAAAACAATTCCCGGCAAGATAACATCGGCCACGCCGAATGCCTCCTCAATGTATCCGGGCTTCCCTCAGCAACAGCAGCAGCATGGTCAATCCATGGGAATGGGCATGCCCTTCGGTGGACAGCAGGGACAGATGCCGATGGGACAAATGTCCGGGCCGCAAGGGCAGATGCAACAGCAATTTGGCAATCCGTACATGTACCAGGGCCAGCAGATGTTCGGTGCGAATGGTCCCGGCCCGCAGCAGATGCAACAGTTTGGCGGTTACGGTAACTACGGATACTATTAGACTAGTTGGCAGATTTATATAGGACAGAGCATCAGAGTGAATAAGTA                                                                                                       ]
[+] EMBL BX615836             [                                     AACGTACCGCTGCTTTCGGGCTCGAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCACCGAACGAGCGGCAACAACGATGCGGGCAGTGGTGGGGGCAACAGCACTGCAGGAATTTCGCTGTCCGACACGCAGAATTTGATTGCCAACTTGATGGAATCGCTACAGAAATCCGTGTCCGACGCCAACAGCCATAGTACAGCGGGAGCGGGCAGTGCCGCCGGCAGCAATAGCTACGCGAATCCGATCACGACGATTGGCGGTAGTGCTGGTAGTGGTGGTGGGGAAAGTGCTGTCGGTAAAACAATTCCCGGCAAGATAACATCGGCCACGCCGAATGCCTCCTCTATGTATCCGGGCTTCCCTCAGCAACAGCAGCAGCATGGTCAATCCATGGGAATGGGCATGCCCTTCGGTGGACAGCAGGGACAGATGCCGATGGGACAAATGTCCGGGCCGCAAGGGCAGATGCAACAGCAATTTGGCAATCCTTACATGTACCAGGGCCAGCAGATGTTCGGTGCGAATGGTCCCGGCCCGCAGCAGATGCAACAGTTTGGCGGGTACGGTAACTACGGATACTATTAGACTAG                                                                                                                                                 ]
[+] EMBL BX616880             [                                                                                  GACACGAGCTCGAACCATTCGCACCGAACGAGCGGCAACAACGATGCGGGCAGTGGTGGGGGCAACAGCACTGCAGGAATTTCGCTGTCCGACACGCAGAATTTGATTGCCAACTTGATGGAATCGCTACAGAAATCCGTGTCCGACGCCAACAGCCATAGTACAGCGGGAGCGGGCAGTGCCGCCGGCAGCAATAGCTACGCGAATCCGATCACGACGATTGGCGGTAGTGCTGGTAGTGGTGGTGGGGAAAGTGCTGTCGGTAAAACAATTCCCGGCAAGATAACATCGGCCACGCCGAATGCCTCCTCTATGTATCCGGGCTTCCCTCAGCAACAGCAGCAGCATGGTCAATCCATGGGAATGGGCATGCCCTTCGGTGGACAGCAGGGACAGATGCCGATGGGACAAATGTCCGGGCCGCAAGGGCAGATGCAACAGCAATTTGGCAATCCTTACATGTACCAGGGCCAGCAGATGTTCGGTGCGAATGGTCCCGGCCCGCAGCAGATGCAACAGTTTGGCGGTTACGGTAACTACGGATACTATTAGACTAGTTGGCAGATTTATATAGGACAGAGCTTGAGAGTGAATAAGTAAAGTTTCGGTATTACGCATATGTAAACTTAACTCACTTTCGATGGGAAACAGATATTGATGTATAAAACAAAATGAATGAATCACCATAAATACATGATCGAT]




>consensus_5212#1
CCGCGATATTTTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCGGGCTC
GAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCACCGAACGAGCGGCAA
CAACGATGCGGGCAGTGGTGGGGGCAACAGCACTGCAGGAATTTCGCTGTCCGACACGCA
GAATTTGATTGCCAACTTGATGGAATCGCTACAGAAATCCGTGTCCGACGCCAACAGCCA
TAGTACAGCGGGAGCGGGCAGTGCCGCCGGCAGCAATAGCTACGCGAATCCGATCACGAC
GATTGGCGGTAGTGCTGGTAGTGGTGGTGGGGAAAGTGCTGTCGGTAAAACAATTCCCGG
CAAGATAACATCGGCCACGCCGAATGCCTCCTCTATGTATCCGGGCTTCCCTCAGCAACA
GCAGCAGCATGGTCAATCCATGGGAATGGGCATGCCCTTCGGTGGACAGCAGGGACAGAT
GCCGATGGGACAAATGTCCGGGCCGCAAGGGCAGATGCAACAGCAATTTGGCAATCCTTA
CATGTACCAGGGCCAGCAGATGTTCGGTGCGAATGGTCCCGGCCCGCAGCAGATGCAACA
GTTTGGCGGTTACGGTAACTACGGATACTATTAGACTAGTTGGCAGATTTATATAGGACA
GAGCATCAGAGTGAATAAGTAAAGTTTCGGTATTACGCATATGTAAACTTAACTCACTTT
CGATGGGAAACAGATATTGATGTATAAAACAAAATGAATGAATCACCATAAATACATGAT
CGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5212#0      -CGNGGTTTATTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCCGGCTC 59
consensus_5212#1      CCGCGATATTTTGCGCGCTGCATCCAAGAACGTGTCGAACGTACCGCTGCTTTCGGGCTC 60
                       ** * * * ******************************************** *****

consensus_5212#0      GAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCATACGAACGAGCGGCA 119
consensus_5212#1      GAAAATGCCGGCCGATGCGTACGACACGAGCTCGAACCATTCGCAC-CGAACGAGCGGCA 119
                      *********************************************  *************

consensus_5212#0      ACAACGATGCGGGCAGTGGTGGGGGCAACAGTATACTGCCGGAATNTTCGCTGTCCGACA 179
consensus_5212#1      ACAACGATGCGGGCAGTGGTGGGGGCAACAGC--ACTGCAGGAATTT-CGCTGTCCGACA 176
                      *******************************   ***** ***** * ************

consensus_5212#0      CGCAGAATTTNGATTTGCCAACTTGCATGGAATCGCTACAGAAATCCGTGTACGACTGCC 239
consensus_5212#1      CGCAGAATTTGA--TTGCCAACTTG-ATGGAATCGCTACAGAAATCCGTGTCCGAC-GCC 232
                      **********    *********** ************************* **** ***

consensus_5212#0      AACAGCCATAGTACAGCACGGGAGCCGAGCCAGTATC-CCGCCCGGGCCACNGAAATAGA 298
consensus_5212#1      AACAGCCATAGTACAG--CGGGAGC--GGGCAGTGCCGCCGGCAGCAATAGCTACGCGAA 288
                      ****************  *******   * ****  * *** * *    *   *     *

consensus_5212#0      CTTAACGGCGACATTCCCGGATNCNACCGGACNGCAATNTNGGGCAGAGNAACAGGCTTG 358
consensus_5212#1      TCCGATCACGACGATTGGCGGTAGTGCTGG-TAGTGGTGGTGGGGAAAGTGCTGTCGGTA 347
                          *   ****  *    * *    * **   *   *   *** * **         * 

consensus_5212#0      GGNNAACGTTGGGTTAGGGTAGGNGGGGAACAAAGTTTGGCTAGTCCNGGGTANAGAGAC 418
consensus_5212#1      AAACAATTCCCGGCAAGATAACATCGGCCACGCCGAATGCCTCCTC-TATGTATCCGGGC 406
                          **     **  **   *    **  **   *  ** **  **    ***    * *

consensus_5212#0      TCAAATATCCCCCTGTNCCANGATAAGACAAATTACGNGTACCCAANAGCCCCGGACAAC 478
consensus_5212#1      T------TCCCTCAGCAACAGCAGCAG------CATGGTCAATCCATGGGAATGGGCA-- 452
                      *      **** * *   **  *  **       * *   *  * *  *    ** **  

consensus_5212#0      TTGCCCTTGCCCTTCTNAATNGGGTAATTCTCCCTAAG-CGAGTATCCTCNCTTCCCATC 537
consensus_5212#1      -TGCCCTTCGGTGGACAGCAGGGACAGATGCCGATGGGACAAATGTCCGGGC--CGCAAG 509
                       *******             **  *  *  *  *  * * * * ***   *  * **  

consensus_5212#0      GCCCACGACCAAGNCAGGCCACNGNNCAAATTGNGTGANATACAACNCACACTAGTAGGG 597
consensus_5212#1      GGCAGATGCAACAGCAATTTGGCAATC--CTTACATGTACCAGGGCCAGCAGATGTTCGG 567
                      * *     * *   **          *   **   **    *   *   **   **  **

consensus_5212#0      AGCATAGTAGGGACTAGTAGCCCTCTACANGGATGAGNAGANCCAACGACACGTCAACTA 657
consensus_5212#1      TGC---GAATGGTCCCG--GCCCGCAGCAGATGCAA-CAGTTTGGCGGTTACGGTAACTA 621
                       **   * * ** *  *  **** *  **      *  **       *  ***  *****

consensus_5212#0      GGCGGGAAAAACAANACNACAAAGATNGGCCCCNCCGGCAACAGTNNGACGGACTGACAA 717
consensus_5212#1      --CGGATACTATTAGACTA-GTTGGCAGATTTATATAG-GACAGAGCATCAGAGTGAA-- 675
                        ***  *  *  * ** *    *   *         *  ****     * ** ***   

consensus_5212#0      CCCCCAAATCACACATNGGTANTCACCGGCAGGGGCACCCACCGTGCACACAAACGTGGG 777
consensus_5212#1      ----TAAGTAAAGTTTCGGTATT-ACGCATATGTAAACTTAACTCACTTTCGA---TGGG 727
                           ** * *    * **** * **    * *   **  * *   *   * *   ****

consensus_5212#0      GGCGTCCCAAGCGAAAACCATTTGCGCACAACACCACAAACGGCCCACANCCATANCATT 837
consensus_5212#1      --------AAACAGATATTGAT-GTATAAAACAAAATGAATGAATCACCATAAATACATG 778
                              ** *  * *    * *   * ****  *  ** *   ***    *   *** 

consensus_5212#0      AGTGGCACGACCANGAAACATTCCCCCCCGGNCAACAACCAAACTTAGNGATAACACACC 897
consensus_5212#1      ATCGAT------------------------------------------------------ 784
                      *  *                                                        

consensus_5212#0      CAAGCGACGGNAGCCCCCCAACGGCACAACAGCGCAACA 936
consensus_5212#1      ---------------------------------------