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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 841 fasta sequence
[NCGGCGTAGCTCAGGCCAGAATCGCCACGAGGTANTACGCTGCGCCAGCAGGAGCGAACGTTCGCGCGAGGAGTGCGAATCTGACCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTACCCCCG-AG-ATCA-GGGCGCTTATTAAGGAG-CAGCG-GCTCGGTTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCT-GGAGGAGCTGTCGAACAAGCTGCCGGTGATC-GACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAG--AAAGCGTCCACGCCGCTCGGGTTTTCGCTCGT-GCCGGA-AAGCAGCGAGCAGCCGACGCTTGACTTTATTGCG-CCGGACGAGGCCACGTT-CAA-CTACTGGA-CCGAT-GGTATC-AA-TGC-GCT-GCTCGGGCA-GCCGAT-GAC-GAGCAAGCA-GCA-GGA-GGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGACATTTCCAAGGATCCACCGGCCATTCCACCGGAGCCGGAAAATTACGACTTTTGCTTCGACAGTTAAGCAGCAGGAGGCACAAGAGAGAATGTTAAACCAAAGGTTTATTTTGTATGGCAAATTTCCAAAAAAAAAATTAATGCCACTTATTTTCGAGCATCCAAATTAAATACAGGTTTTAATTTTTGATACTTTCTCCCTCCATATCTTCCATATCGTGCAGCAGAGGGAAA]
[+] EMBL BX466581 [NCGGCGTAGCTCAGGCCAGAATCGCCACGAGGTANTACGCTGCGCCAGCAGGAGCGAACGTTCGCGCGAGGAGTGCGAATCTGACCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTACCCCCGTAGAATCAGGGGCGCTTATTAAGGAGACAGCGTGCTCGGTTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGGGAGGAGCTGTCGAACAAGCTGCCGGTGATC GACATCCGNCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAGGTAAAGCGTCCACGCCGCTCGGGTTTACGCTCGTGGCCGGANTAGCAGCGAGCAGCCGACGCTTGACTTTATTGCGACCGGACGAGGCCACGTTACAAGCTACTGGACCCGATAGGTATCNAACTGCGGCTGGCTCGGGCAGGCCGATAGACAGAGCAAGCAGGCAGGGAGGGAAGACTTCG ]
[+] EMBL BX625896 [ CCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTACCCCCG AG ATCA GAGCGCTTATTAAGGAG CAGCG GCTCGGCTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTACGTGCGGCTGTCCCCCAACCACAAGGTCATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCT GGAGGAGCTGTCGAACAAGCTGCCGGTGATC GACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAG AAAGCGTCCACGCCGCTCTGGTTTTCGCTCGT GCCGGA AAGCAGCGAGCAGCCGACGCTTGACTTTATTGCG CCGGACGAGGCCACGTT CAA CTACTGGA CCGAT GGTATC AA TGC GCT GCTCGGGCA GCCGAT GAC GAGCAAGCA GCA GGA GGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGACATTTCCAAGGATCCACCGGCCATTCCACCGGAGCCGGAAAATTACGACTTTTGCTTCGACAGTTAAGCAGCAGGAGGCACAAGAGAGAATGTTAAACCAAAGGTTTATTTTGTATGGCAAATTTCCAAAAAAAAAATTAATGCCACTTATTTTCGAGCATCCAAATTAAATACAGGTTTTAATTTTTGATACTTTCTCCCTCCATATCTTCCATATCGTGCAGCAGAGGGAAA]
[+] EMBL AL930260 [ agATCGCCCGAGGTTAGCTT AAGAAGAAAATTACCCCCG AG ATCA GGCGCTTATTAAGGAG CAGCG GCTCGGTTACCTGATCGTGGGCACACGGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCT GGAGGAGCTGTCGAACAAGCTGCCGGTGATCTGACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAG AAAGCGTCCACGCCGCTCGGGTTTTCGCTCGT GCCGGA AAGCAGCGAGCAGCCGACGCTTGACTTTATTGCA CCGGACGAGGCCACGTT CAA CTACTGGA CCGAT GGTATC AA TGC GCT GCTCGGGCA GCCGAT GAC GAGCAAGCA GCA GGA GGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGAC ]
consensusID : consensus_5216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[CCCCGAGGTATACGGGCGGCAGCGCGAGCGGGACAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGGAGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCGTGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCACCGGACGAGGCCACGTTCAACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGGAGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGCACATTTCCAAGGATCCACCGGCATTCCAACCGGAGCCGGAAAATTTACGAACTTATNCTGCTTTCGACAGCCTAAGCACGCCAGGAGCGGGATTTAACAGGGAACGGCACCAAAGCAGAGCANAATGGTNAAAACCCAAACGGGTTATAATANCTAGGTAATGGGCACACACTTTCCCCAACNC]
[+] EMBL AL695644 [CCCCGAGGTATACGGGCGGCAGCGCGAGCGGGACAGTACTGGTATGTGCGGCTGTCCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGGAGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGTGCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCGTGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCACCGGACGAGGCCACGTTCAACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGGAGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGGGGGTGGCACATTTCCAAGGATCCACCGGCATTCCAACCGGAGCCGGAAAATTTACGAACTTATNCTGCTTTCGACAGCCTAAGCACGCCAGGAGCGGGATTTAACAGGGAACGGCACCAAAGCAGAGCANAATGGTNAAAACCCAAACGGGTTATAATANCTAGGTAATGGGCACACACTTTCCCCAACNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5216#0 NCGGCGTAGCTCAGGCCAGAATCGCCACGAGGTANTACGCTGCGCCAGCAGGAGCGAACG 60
consensus_5216#1 ------------------------------------------------------------
consensus_5216#0 TTCGCGCGAGGAGTGCGAATCTGACCGCATCGGCCATTGTGAGCTTAAAGAAGAAAATTA 120
consensus_5216#1 ------------------------------------------------------------
consensus_5216#0 CCCCCGAGATCAGGGCGCTTATTAAGGAGCAGCGGCTCGGTTACCTGATCGTGGGCACAC 180
consensus_5216#1 ------------------------------------------------------------
consensus_5216#0 GGTTCTGCAAGTACTCGGGCGGCAAGCGCGAGCGGGACAAGTACTGGTATGTGCGGCTGT 240
consensus_5216#1 ---CCCCGAGGTATACGGGCGGCA-GCGCGAGCGGGACA-GTACTGGTATGTGCGGCTGT 55
* * *** ********* ************** ********************
consensus_5216#0 CCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGG 300
consensus_5216#1 CCCCGAACCACAAGGTTATTCACTACGGCGACTGTGACGAGAAGACGGTGCCGACGCTGG 115
************************************************************
consensus_5216#0 AGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGT 360
consensus_5216#1 AGGAGCTGTCGAACAAGCTGCCGGTGATCGACATCCGCCAGATGCTGGTCGGCAAGGAGT 175
************************************************************
consensus_5216#0 GCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCG 420
consensus_5216#1 GCCCGCACATGAAGGAGATGCGGTCGAAGAAAGCGTCCACGCCGCTCGGGTTTTCGCTCG 235
************************************************************
consensus_5216#0 TGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCGCCGGACGAGGCCACGTTCA 480
consensus_5216#1 TGCCGGAAAGCAGCGAGCAGCCGACGCTTGACTTTATTGCACCGGACGAGGCCACGTTCA 295
**************************************** *******************
consensus_5216#0 ACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGG 540
consensus_5216#1 ACTACTGGACCGATGGTATCAATGCGCTGCTCGGGCAGCCGATGACGAGCAAGCAGCAGG 355
************************************************************
consensus_5216#0 AGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGG 600
consensus_5216#1 AGGAAGACTTCGAGACGCTGCTGTCGATGGAGATCAAGCTGCGGCTGCTCGACACGGAGG 415
************************************************************
consensus_5216#0 GGGTGG-ACATTTCCAAGGATCCACCGGCCATTCCACCGGAGCCGGAAAATT-ACGA-CT 657
consensus_5216#1 GGGTGGCACATTTCCAAGGATCCACCGGCATTCCAACCGGAGCCGGAAAATTTACGAACT 475
****** ********************** * * ***************** **** **
consensus_5216#0 TTTGCTTCGACAGTTAAGCAGCAGGAGGCACAAGAGAGAATGTTAAACCAAAGGTTTATT 717
consensus_5216#1 TATNCTGCTTTCGACA-GCCTAAGCACGC-CAGGAGCGGGATTTAA--CAGGGAACGGCA 531
* * ** * * * ** ** * ** ** *** * **** ** *
consensus_5216#0 TTGTATGGCAAATTTCCAAAAAAAAAATTAATGCCACTTATTTTCGAGCATCCAAATTAA 777
consensus_5216#1 CC--AAAGCAGAGCANAATGGTNAAAACCCAAACGGGTTAT-----AATANCTAGGTAAT 584
* *** * * **** * * **** * * * * * *
consensus_5216#0 ATACAGGTTTTAATTTTTGATACTTTCTCCCTCCATATCTTCCATATCGTGCAGCAGAGG 837
consensus_5216#1 GGGCACACACTT-TCCCCAACNC------------------------------------- 606
** * * * *
consensus_5216#0 GAAA 841
consensus_5216#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||