These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1532 fasta sequence [CGGTTAATCGATCAGGTGAAGACTCGATGGATATGTGCGTAACGAGCAACTCGTACCTGGACATTTCAACCATACTACCGTCGTCTTTAAGCGACGATAACATTGAAGAGATCCTTACGCACATCTTAACGCCGACAATACGCAAACAAACGTACGTCTTCGGGATGGTCGTTCTGACGGTGAACTTCATGGACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGGTGCGGTTTGAAAGTGGTAGCTATCAAAAGCTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCAAGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTTTCTGCCACAAGCATGGTCTGCCGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTTTTTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCTATTTTAACCTTCCTGCAGGCGGTGCTGAGAACTGACGACTCAAAAGTATTCAACAACTACCATGATCTGGTACTGAAGTTACTAAGTACGGAAAGCTCCACCACGGAAGAAGCCAAGGCAAATGCGGAAGATATTACGAAGCAGCTGGGTGAACTGACGCCTGTTGTGAAGAACATTGCTGGCAACTTTAAGAAAGCTGGTGTAACTCCAGTAGAGTAAAGAAGGAGAGAGGTCGTTCGATCGGTCGTTAGGTCCTTAGTGCATTAAATTGGGTTGGATCTTACTTGTGTGCTGGAGGTATGGTTAATATTCTTTATTTTTTCGCGTCAATAAAACCCGAGCTTGTTAATT] [+] EMBL CNS08XNL [CGGTTAATCGATCAGGTGAAGACTCGATGGATATGTGCGTAACGAGCAACTCGTACCTGGACATTTCAACCATACTACCGTCGTCTTTAAGCGACGATAACATTGAAGAGATCCTTACGCACATCTTAACGCCGACAATACGCAAACAAACGTACGTCTTCGGGATGGTCGTTCTGACGGTGAACTTCATGGACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGGTGCGGTTTGAAAGTGGTAGCTATCAAAAGCTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCAAGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAA ] [-] EMBL CNS08XNM [ CTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTTTCTGCCACAAGCATGGTCTGCCGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTTTTTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCTATTTTAACCTTCCTGCAGGCGGTGCTGAGAACTGACGACTCAAAAGTATTCAACAACTACCATGATCTGGTACTGAAGTTACTAAGTACGGAAAGCTCCACCACGGAAGAAGCCAAGGCAAATGCGGAAGATATTACGAAGCAGCTGGGTGAACTGACGCCTGTTGTGAAGAACATTGCTGGCAACTTTAAGAAAGCTGGTGTAACTCCAGTAGAGTAAAGAAGGAGAGAGGTCGTTCGATCGGTCGTTAGGTCCTTAGTGCATTAAATTGGGTTGGATCTTACTTGTGTGCTGGAGGTATGGTTAATATTCTTTATTTTTTCGCGTCAATAAAACCCGAGCTTGTTAATT] consensusID : consensus_5217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1049 fasta sequence [GACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGCGTGCGGTTGAAAGTGTAGCTATCAAAAGTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCGAGACGAAGACAAAATCGACGAAAAAGCATGCCCGAGGAACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTTGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTCTCTGCCACAAGCATGGTCTGCTGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTATCTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCT] [+] EMBL BX608438 [GACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGCGTGCGGTTGAAAGTGTAGCTATCAAAAGTATATAGCAGAGAAGTCAATAAAGCATCAGGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAAGAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCGAGACGAAGACAAAATCGACGAAAAAGCATGCCCGAGGAACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTTGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTGAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTA ] [+] EMBL BX608754 [ AACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGAGATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCACAGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTTGGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGCGCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGCCAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATTTAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGGCACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAACTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGAATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGATTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGACAAAAAAAAGGATAGAAACCTAATTCTCTGCCACAAGCATGGTCTGCTGGAGCAGCTGACCAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTATCTTTACTATCTCAACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5217#0 CGGTTAATCGATCAGGTGAAGACTCGATGGATATGTGCGTAACGAGCAACTCGTACCTGG 60 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 ACATTTCAACCATACTACCGTCGTCTTTAAGCGACGATAACATTGAAGAGATCCTTACGC 120 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 ACATCTTAACGCCGACAATACGCAAACAAACGTACGTCTTCGGGATGGTCGTTCTGACGG 180 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 TGAACTTCATGGACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAG- 239 consensus_5217#1 -----------GACGAGTGTGTTAAAGGTTGTCTAGAGCTGGTGAACGAGCATGCGAAGC 49 ************************************************ consensus_5217#0 GTGCGGTTTGAAAGTGGTAGCTATCAAAAGCTATATAGCAGAGAAGTCAATAAAGCATCA 299 consensus_5217#1 GTGCGGTT-GAAAGTG-TAGCTATCAAAAG-TATATAGCAGAGAAGTCAATAAAGCATCA 106 ******** ******* ************* ***************************** consensus_5217#0 GGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAA 359 consensus_5217#1 GGAGGTGGATCACGGTGTAATGGAAGAGGAAAAGGCTGACAAGCGAGAGGAGCGACGCAA 166 ************************************************************ consensus_5217#0 GAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCAAGACGA---------- 409 consensus_5217#1 GAAGGCATCTACTGGGAAGGGTGGTGGCGGTGCCCAGGGTCGCGAGACGAAGACAAAATC 226 ******************************************* ****** consensus_5217#0 ---------------------------------------------------TGGCGGAGA 418 consensus_5217#1 GACGAAAAAGCATGCCCGAGGAACCCGGGGCAATGTGTCGGATTCGGACGATGGCGGAGA 286 ********* consensus_5217#0 GATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCAC 478 consensus_5217#1 GATACAGACGAATGCGAGCAACAAGAAGGGCGGAAAGGATCCACACATTGAGCTTATCAC 346 ************************************************************ consensus_5217#0 AGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTT 538 consensus_5217#1 AGCCAAGGAGATCGCCAAGGTGGTGGAAAAGACGCTCGAGCCTGAAGGACTGGAGATGTT 406 ************************************************************ consensus_5217#0 GGCAAAGGACGTGGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGC 598 consensus_5217#1 GGCAAAGGACGTTGCAAATCATTACTTCCCAATTTTAAGCAAACAGGCACTGGTTAAAGC 466 ************ *********************************************** consensus_5217#0 GCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGC 658 consensus_5217#1 GCACGAGCTGTACGAGCAATCACTTCAGAAGAACAATCAAAACCGTCGCCAAACTCATGC 526 ************************************************************ consensus_5217#0 CAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATT 718 consensus_5217#1 CAGCATTCAGGAGAAGCTCAACACACTATACAACGACATCCGGCTGTACGAGAAGGGATT 586 ************************************************************ consensus_5217#0 GAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGG 778 consensus_5217#1 GAAACTGTTCCCTGCCGACGTGCAGGGACAGCTGCTCAAGTATCTGCTGAAAACGTTCGG 646 ************************************************************ consensus_5217#0 CACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAA 838 consensus_5217#1 CACGGATGCATGCAATGAGTTGTGCCTGTATGTTGCGTCCGAGTGTAATCTAAACACTAA 706 ************************************************************ consensus_5217#0 CTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGA 898 consensus_5217#1 CTTTAACGCACCACTCACTACTGAACAGCGGACCAAGATTGCGAACGACAGTGGGCCGGA 766 ************************************************************ consensus_5217#0 ATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGA 958 consensus_5217#1 ATATCGGCCCCACCTGCAGACGCTCTGCAAAGCGCTGTCCGCCAGCGAAACGGTCGAAGA 826 ************************************************************ consensus_5217#0 TTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGA 1018 consensus_5217#1 TTTCCTCGACAAAACAGAAAAGACGATGCAGGCGTGCAGCATGATGCTGAAAAAGATCGA 886 ************************************************************ consensus_5217#0 CAAAAAAAAGGATAGAAACCTAATTTTCTGCCACAAGCATGGTCTGCCGGAGCAGCTGAC 1078 consensus_5217#1 CAAAAAAAAGGATAGAAACCTAATTCTCTGCCACAAGCATGGTCTGCTGGAGCAGCTGAC 946 ************************* ********************* ************ consensus_5217#0 CAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTTTTTTTACTATCTC 1138 consensus_5217#1 CAACTGTACCGATCCGGCCCTGGTACTTCATCTGGCCGTACTGATTATCTTTACTATCTC 1006 ********************************************** * *********** consensus_5217#0 AACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCTATTTTAACCTTCCTGCA 1198 consensus_5217#1 AACGCAAACCATGCTGCACGCTTCCGGTCGGCACGTGTCCGCT----------------- 1049 ******************************************* consensus_5217#0 GGCGGTGCTGAGAACTGACGACTCAAAAGTATTCAACAACTACCATGATCTGGTACTGAA 1258 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 GTTACTAAGTACGGAAAGCTCCACCACGGAAGAAGCCAAGGCAAATGCGGAAGATATTAC 1318 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 GAAGCAGCTGGGTGAACTGACGCCTGTTGTGAAGAACATTGCTGGCAACTTTAAGAAAGC 1378 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 TGGTGTAACTCCAGTAGAGTAAAGAAGGAGAGAGGTCGTTCGATCGGTCGTTAGGTCCTT 1438 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 AGTGCATTAAATTGGGTTGGATCTTACTTGTGTGCTGGAGGTATGGTTAATATTCTTTAT 1498 consensus_5217#1 ------------------------------------------------------------ consensus_5217#0 TTTTTCGCGTCAATAAAACCCGAGCTTGTTAATT 1532 consensus_5217#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||