These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1179 fasta sequence [AATCAAAAACACTTCTTCGTTCTACAGACACACACACACACAGAGTCACACAAGGGAGTGGGAGGTAGAAGAAAAAGTATGCGATCTCGACCGGCACTAGCAATCGATAGTTTAAGTTTCGTTCTTTCTATGTTTTAGCTAACCCCTGTTCGATTCATTACACATAGCGCACAGTGTGTTCACACGTCCGTCATCTGAAGTAGCGCTTTCACACTCACTTTCGACTACGTTTTGTCACATGTAGTATGTGTGTATCAGTATCGTTTCCCGCCTCACACGGGTTGATTTTTTTTCTTTCATTATTCATTAAGCGATAAACTCGTTGATTTGCAAGCGATTATTTTATACCATTCTGATGCGAGAATTTGTTTCTTTACCTTAGCCACACACTTACTGAAAAGGTTCTGTCTTTTTTTACCGTCTTTCTTTTTGTACAAAAAAAAAAAAACTAAACCCCACACCGAGCAGTCATTGTGAAGGCAACGGATCCGCGGCACCCGGAACCGGGAAGCAAGCCGCGACCGCCAATGCCACTCGCGCTGCTGCCCATAATGGCACGCTGGCAGAAGGGCAGCATTGGCTCAAAGGCCTAGAACGCAGTGAGGGGAGGGAAGGGTATAGATAACTGAAACGTCCCCACGACCGACAACCCACCCACCCACAACACAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAGCCGATAGTAGTGTGGTGCCTGCCAAATTCCACCGCCCGTAACACATCGCGTTCCTCAGCACGCACCGGCGAGGGATGTATACACCCTACATGTTCCTATTGTTTAAGAGGATGTTGTTTTTTTTTTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAAC] [+] EMBL BX626941 [AATCAAAAACACTTCTTCGTTCTACAGACACACACACACACAGAGTCACACAAGGGAGTGGGAGGTAGAAGAAAAAGTATGCGATCTCGACCGGCACTAGCAATCGATAGTTTAAGTTTCGTTCTTTCTATGTTTTAGCTAACCCCTGTTCGATTCATTACACATAGCGCACAGTGTGTTCACACGTCCGTCATCTGAAGTAGCGCTTTCACACTCACTTTCGACTACGTTTTGTCACATGTAGTATGTGTGTATCAGTATCGTTTCCCGCCTCACACGGGTTGATTTTTTTTCTTTCATTATTCATTAAGCGATAAACTCGTTGATTTGCAAGCGATTATTTTATACCATTCTGATGCGAGAATTTGTTTCTTTACCTTAGCCACACACTTACTGAAAAGGTTCTGTCTTTTTTTACCGTCTTTCTTTTTGTACAAAAAAAAAAAAACTAAACCCCACACCGAGCAGTCATTGTGAAGGCAACGGATCCGCGGCACCCGGAACCGGGAAGCAAGCCGCGACCGCCAATGCCACTCGCGCTGCTGCCCATAATGGCACGCTGGCAGAAGGGCAGCATTGGCTCAAAGGCCTAGAACGCAGTGAGGGGAGGGAAGGGTATAGATAACTGAAACGTCCCCACGACCGACAACCCACCCACCCACAACACAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATG ] [+] EMBL BM626789 [ ccgtggAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAGCCGATAGTAGTGTGGTGCCTGCCAAATTCCACCGCCCGTAACACATCGCGTTCCTCAGCACGCACCGGCGAGGGATGTATACACCCTACATGTTCCTATTGTTTAAGAGGATGTTGTTTTTTTTTTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAAC] consensusID : consensus_5220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CAGAATTCGCCCCCGAGGTNTTATAGCAGCCGATAGTAGTGTGTGTGCTGCCAAATTCCACCTGCCCTGTAACACATCGCTGTTCCTCAGCACTGCACCTGGCGAGGGATGTATACACCCTAACATGTTCCTATTGTTTAAGAGGATGTTTGTTAATATATTATATTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAACAATGGAATGCATTAGGAGCAAGGCAGAGACAAAACACACAACAGCTGCCATAAGGAGGGACATGCCCGTAGGAAACGCTCAATTGACGGAAAACAGGTGGAAAACAAGAGGGTTAGTAAACTATGTGGGATGTCACTCGCTACCTGTTACGATGAGTGAAAGCGGTACGGACAAGCCTGAGGTGTGCCATGAATTCCATAGTTTGTACCCCCATCCGCAGCTTAAATCGACTGAAAGNGGAAAGCATCGACGGATCGTGGCGTGTTAAATATATTACATAGCGTTTTGCTTTCGGGATTTTGCTATTTCCGTTTTGAAATTCTCCATGCTNTTGCCTAGCTT] [+] EMBL AL931489 [CAGAATTCGCCCCCGAGGTNTTATAGCAGCCGATAGTAGTGTGTGTGCTGCCAAATTCCACCTGCCCTGTAACACATCGCTGTTCCTCAGCACTGCACCTGGCGAGGGATGTATACACCCTAACATGTTCCTATTGTTTAAGAGGATGTTTGTTAATATATTATATTGCTTGCTTGTAGAGAAAGGGTGTTAGAAAAGGTTTGTGCAAAGTTCGCCTATCATTTGTCTTCCCTATAAGTGCGTGTGTGTACGTACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTATCCTTTGGGGCATTAATTATAATTAGCACACGTGCATCGAGCTTTGAAAAAACGAAACAATGGAATGCATTAGGAGCAAGGCAGAGACAAAACACACAACAGCTGCCATAAGGAGGGACATGCCCGTAGGAAACGCTCAATTGACGGAAAACAGGTGGAAAACAAGAGGGTTAGTAAACTATGTGGGATGTCACTCGCTACCTGTTACGATGAGTGAAAGCGGTACGGACAAGCCTGAGGTGTGCCATGAATTCCATAGTTTGTACCCCCATCCGCAGCTTAAATCGACTGAAAGNGGAAAGCATCGACGGATCGTGGCGTGTTAAATATATTACATAGCGTTTTGCTTTCGGGATTTTGCTATTTCCGTTTTGAAATTCTCCATGCTNTTGCCTAGCTT] consensusID : consensus_5220#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GAATTCCCGAGGTTTAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAACCGATAGTAGTGTGGTGCCTGCCAAATTCCAACCGGCCGTAACACATCGCGTTCCTCAGCACGCACCGGGGAGGGATGTATTACACCCTACATGTTCCTATTGTTTAAAGAGGATGTTATTAAGCTTACTTGTAGAGAAAGGGGTGTTAGGAAAAGGTTTCGTGCAAAGTTCGCTATCATTAGTCTTTCCCTATAAGTGCGTGTGTGTATGTACCGAGCGCGCACAAACACATACACCACTGACTTCCGAGCACGGCGTAATCCTTTATCCTTNGGGGCCTTCCTTCCTCNACTTAGCACAAGTGCATCGAGCTCGCAAACACACAGAAATAACTGGAATCCATAGGAGCAAGGCAGAGCACAAAACACACAACAGCGCCATAGGAGGGACATGCCCGAGGANACGCTCAATGAGGAAACAGG] [+] EMBL AL695660 [GAATTCCCGAGGTTTAACAACGTCCCTTATGAAACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTGTATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGTCGGATAGCAAACCGATAGTAGTGTGGTGCCTGCCAAATTCCAACCGGCCGTAACACATCGCGTTCCTCAGCACGCACCGGGGAGGGATGTATTACACCCTACATGTTCCTATTGTTTAAAGAGGATGTTATTAAGCTTACTTGTAGAGAAAGGGGTGTTAGGAAAAGGTTTCGTGCAAAGTTCGCTATCATTAGTCTTTCCCTATAAGTGCGTGTGTGTATGTACCGAGCGCGCACAAACACATACACCACTGACTTCCGAGCACGGCGTAATCCTTTATCCTTNGGGGCCTTCCTTCCTCNACTTAGCACAAGTGCATCGAGCTCGCAAACACACAGAAATAACTGGAATCCATAGGAGCAAGGCAGAGCACAAAACACACAACAGCGCCATAGGAGGGACATGCCCGAGGANACGCTCAATGAGGAAACAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5220#0 AATCAAAAACACTTCTTCGTTCTACAGACACACACACACACAGAGTCACACAAGGGAGTG 60 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 GGAGGTAGAAGAAAAAGTATGCGATCTCGACCGGCACTAGCAATCGATAGTTTAAGTTTC 120 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 GTTCTTTCTATGTTTTAGCTAACCCCTGTTCGATTCATTACACATAGCGCACAGTGTGTT 180 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 CACACGTCCGTCATCTGAAGTAGCGCTTTCACACTCACTTTCGACTACGTTTTGTCACAT 240 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 GTAGTATGTGTGTATCAGTATCGTTTCCCGCCTCACACGGGTTGATTTTTTTTCTTTCAT 300 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TATTCATTAAGCGATAAACTCGTTGATTTGCAAGCGATTATTTTATACCATTCTGATGCG 360 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 AGAATTTGTTTCTTTACCTTAGCCACACACTTACTGAAAAGGTTCTGTCTTTTTTTACCG 420 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TCTTTCTTTTTGTACAAAAAAAAAAAAACTAAACCCCACACCGAGCAGTCATTGTGAAGG 480 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 CAACGGATCCGCGGCACCCGGAACCGGGAAGCAAGCCGCGACCGCCAATGCCACTCGCGC 540 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TGCTGCCCATAATGGCACGCTGGCAGAAGGGCAGCATTGGCTCAAAGGCCTAGAACGCAG 600 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TGAGGGGAGGGAAGGGTATAGATAACTGAAACGTCCCCACGACCGACAACCCACCCACCC 660 consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 ACAACACAAAACAACCGCGAGTACCGGAAGCGAAAACAGCAACAACAACGTCCCTTATGA 720 consensus_5220#2 ------------------GAATTCCCGAGGTT----------TAACAACGTCCCTTATGA 32 consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 AACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTG 780 consensus_5220#2 AACACAACACACGCACACGCACATTATATTGTGGTACACACGCTGTATGGATGGATGCTG 92 consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGT 840 consensus_5220#2 TATGAAGGCGGATGACATACAGGGAATGGAAAACAACTGCATCAACAAAAGCGTTAATGT 152 consensus_5220#1 ------------------------------------CAGAATTCGC-----CCCCGAGGT 19 * * ** * * * ** consensus_5220#0 CGGATAGCAAGCCGATAGTAGTGTGGTGCCTGCCAAATTCCA-CCGCCC-GTAACACATC 898 consensus_5220#2 CGGATAGCAAACCGATAGTAGTGTGGTGCCTGCCAAATTCCAACCGGCC-GTAACACATC 211 consensus_5220#1 NTTATAGCA-GCCGATAGTAGTGTGTGTGCTGCCAAATTCCACCTGCCCTGTAACACATC 78 ****** ************** ************* * * ** ********** consensus_5220#0 GC-GTTCCTCAGCAC-GCACC-GGCGAGGGATGTAT-ACACCCTA-CATGTTCCTATTGT 953 consensus_5220#2 GC-GTTCCTCAGCAC-GCACC-GGGGAGGGATGTATTACACCCTA-CATGTTCCTATTGT 267 consensus_5220#1 GCTGTTCCTCAGCACTGCACCTGGCGAGGGATGTAT-ACACCCTAACATGTTCCTATTGT 137 ** ************ ***** ** *********** ******** ************** consensus_5220#0 TTAA-GAGGATGTTGTTT------TTTTTTTGCTTGCTTGTAGAGAAAGGG-TGTTAGAA 1005 consensus_5220#2 TTAAAGAGGATGTTATT------------AAGCTTACTTGTAGAGAAAGGGGTGTTAGGA 315 consensus_5220#1 TTAA-GAGGATGTTTGTTAATATATTATATTGCTTGCTTGTAGAGAAAGGG-TGTTAGAA 195 **** ********* * **** *************** ****** * consensus_5220#0 AAGG--TTTGTGCAAAGTTCGCCTATCATTTGTCTT-CCCTATAAGTGCGTGTGTGTACG 1062 consensus_5220#2 AAAGGTTTCGTGCAAAGTTCGC-TATCATTAGTCTTTCCCTATAAGTGCGTGTGTGTATG 374 consensus_5220#1 AAGG--TTTGTGCAAAGTTCGCCTATCATTTGTCTT-CCCTATAAGTGCGTGTGTGTACG 252 ** * ** ************* ******* ***** ********************* * consensus_5220#0 TACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTAT 1122 consensus_5220#2 TACCGA-GCGCGCACAAACACATACACCACTGACTTCCGAGCACGG-CGTAATCCTTTAT 432 consensus_5220#1 TACGAGCGCGCACACACACACATACATCCATGACTTCCGAGCACGGTCGTTATCCTTTAT 312 *** **** **** ********* * **************** *** ********* consensus_5220#0 CCTTTGGGGCATTAATTA---TAATTAGCACACGTGCATCGAGCTTTGAAAAA-ACGAAA 1178 consensus_5220#2 CCTTNGGGGCCTTCCTTCCTCNACTTAGCACAAGTGCATCGAGCTCGCAAACACACAGAA 492 consensus_5220#1 CCTTTGGGGCATTAATTA---TAATTAGCACACGTGCATCGAGCTTTGAAAAA-ACGAAA 368 **** ***** ** ** * ******** ************ *** * ** ** consensus_5220#0 C----------------------------------------------------------- 1179 consensus_5220#2 ATAACTGGAATCCATAGGAGCAAGGCAGAGCACAAAACACACAACAGCGCCATAGGAGGG 552 consensus_5220#1 CAATGGAATGCATTAGGAGCAAGGCAGAGACAAAACACACAACAGCTGCCATAAGGAGGG 428 consensus_5220#0 ------------------------------------------------------------ consensus_5220#2 ACATGCCCGAGGANACGCTCAATGAGGAAACAGG-------------------------- 586 consensus_5220#1 ACATGCCCGTAGGAAACGCTCAATTGACGGAAAACAGGTGGAAAACAAGAGGGTTAGTAA 488 consensus_5220#0 ------------------------------------------------------------ consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 ACTATGTGGGATGTCACTCGCTACCTGTTACGATGAGTGAAAGCGGTACGGACAAGCCTG 548 consensus_5220#0 ------------------------------------------------------------ consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 AGGTGTGCCATGAATTCCATAGTTTGTACCCCCATCCGCAGCTTAAATCGACTGAAAGNG 608 consensus_5220#0 ------------------------------------------------------------ consensus_5220#2 ------------------------------------------------------------ consensus_5220#1 GAAAGCATCGACGGATCGTGGCGTGTTAAATATATTACATAGCGTTTTGCTTTCGGGATT 668 consensus_5220#0 ------------------------------------------- consensus_5220#2 ------------------------------------------- consensus_5220#1 TTGCTATTTCCGTTTTGAAATTCTCCATGCTNTTGCCTAGCTT 711 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||