These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 906 fasta sequence [CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGTGGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCGATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGTTTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGCCTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCACTGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACGATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACGAATGATTGCCACCGTAAATGCTCGAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCGCGGGCGGCT-CCCAGTCGCAGCTGC-ATCCGATTCGGACAAATTATTACAA-CCCCGCCCAACATGTCTGT-GGTCGAGTGGGTCGAGGAAACGCGCCCGCAAGCGTTNGACGCCCATAATAGAAAAACGACAAGCGCGAAGGCAGCGTAAGCAGGACCTTGCCAAGCGGCGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTTCCCACCTCGCCCGAAAAGAGAAGGGTAGCGATGATTTCGGAATGCGCGACGAGGACTGGGATGTGTATAAGCAAATCAGTCGCGAAGAGGATAGCGACAATGAGAACGACAGTGAACGTTTG] [+] EMBL BM589706 [CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGTGGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCGATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGTTTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGCCTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCACTGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACGATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACGAATGATTGCCACCGTAAATTCTCGAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCGCGGGCGGCT CCCAGTC ] [+] EMBL BM607772 [ ccgACATGATCGCCTTTCTGCACCGATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGTTTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGCCTGCCTGACATATTATGACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCACTGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACGATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGCTACAGCAGCTAGAAGAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGTGAGCTGAAACGAATGATTGCCACCGTAAATGCTCGAATCGAAAAAGCGCGCCAAAAAATGAACGCACCATGCGCGGGCGGCT CCCAGTCGCAGCTGCAATCCGATTCGGACAAATTATTACAACCCCCGCCCAACATGTCTGTGGGTCGAGTGGGTCGAGGAAAC ] [+] EMBL AL933447 [ ccccgagGCTCAAATCGAAAAAGCGCGTC AAAAATGAACGCACCATGCGCGGGCGGCTCCCCAGTCGCAGCTGC ATCCGATTCGGACAAATTATTACAA CCCCGGCCAACATGTCTGT GGTCGAGTGGGTCGAGGAAACGCGCCCGCAAGCGTTNGACGCCCATAATAGAAAAACGACAAGCGCGAAGGCAGCGTAAGCAGGACCTTGCCAAGCGGCGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTTCCCACCTCGCCCGAAAAGAGAAGGGTAGCGATGATTTCGGAATGCGCGACGAGGACTGGGATGTGTATAAGCAAATCAGTCGCGAAGAGGATAGCGACAATGAGAACGACAGTGAACGTTTG] consensusID : consensus_5229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AGAATTGCCCGAGGTTTTAAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGTTACAGCAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAATTCTCGCAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCAGTCGCAGCTGCAATCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTAGGTGGTCGAGTGGGTCGAGGCACAACGCGCCGCAAGCGTGACGCCATAATAGAAAAACGACAAGACGCGAAGGCAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGACTGATTCTCGGCAAATGCGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCGCCNCAACNCTCCANGCTCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTNACCNCTGAACACGCTCTGCGCTNGCGAAG] [+] EMBL AL695993 [AGAATTGCCCGAGGTTTTAAACGACTGGCGCAGGATGAGGAATTGCTAATGCAGTTACAGCAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGTTTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAATTCTCGCAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCAGTCGCAGCTGCAATCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTAGGTGGTCGAGTGGGTCGAGGCACAACGCGCCGCAAGCGTGACGCCATAATAGAAAAACGACAAGACGCGAAGGCAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGCTCAGGAGCGAATGCGCATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGACTGATTCTCGGCAAATGCGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCGCCNCAACNCTCCANGCTCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTNACCNCTGAACACGCTCTGCGCTNGCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5229#0 CCGCATCGCCACCGGTTATCACACCACTCACGTCGTGCCAGTGCTGAACGGACGCATGGT 60 consensus_5229#1 ------------------------------------------------------------ consensus_5229#0 GGTGGAAAATATACGCCGCATAAACATTGGCGGATCGCACATGATCGCCTTTCTGCACCG 120 consensus_5229#1 ------------------------------------------------------------ consensus_5229#0 ATGTTTGCAGCTGAAGTATACATTCCACCTTAACGCGATCACGTTGAGTCGTTCGGAGGT 180 consensus_5229#1 ------------------------------------------------------------ consensus_5229#0 TTTGCTGCACAAGTATGGAGAGTTTGCGTACGACTACATGGAGGCGCTCCAAAACTGGGC 240 consensus_5229#1 ------------------------------------------------------------ consensus_5229#0 CTGCCTGACATATTATAACCAAAACGTGAAGAAAATACAGCTGCCCTACAACCAGACCAC 300 consensus_5229#1 ------------------------------------------------------------ consensus_5229#0 TGCAGCGCCGGCACTAACGACGGAGCAGAAGTTTGAAAAGAAGAAAGAGCTTTCTAAACG 360 consensus_5229#1 ------------------------------------------------------------ consensus_5229#0 ATTGGCAGAGATCAATGCACGGCGGCGTGAGGAACGACTGGCGCAGGATGAGGAATTGCT 420 consensus_5229#1 ----------AGAATTGCCCGAGGTTTTA---AACGACTGGCGCAGGATGAGGAATTGCT 47 * * *** ** * * **************************** consensus_5229#0 AATGCAGCTACAGCAGCTAGAAG--AGTCCGCGGAAGATGGAGAGGACATTCGCGATGGT 478 consensus_5229#1 AATGCAGTTACAGCAGCTAGCAAGCAGTCCGCGGAAGATGGAGAGGACATTCGCGATGGT 107 ******* ************ * *********************************** consensus_5229#0 TTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAAC-GAATGATTGCCACCGTAAA 537 consensus_5229#1 TTGGTCGAGCACAGCATCAAAGACGTGGGCGAGCTGAAACTGAATGATTGCCACCGTAAA 167 **************************************** ******************* consensus_5229#0 TGCTCG-AATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGC-GCGGGC-GGCTCCCA 594 consensus_5229#1 TTCTCGCAATCGAAAAAGCGCGTCAAAAAATGAACGCACCATGCTGCGGGCTGGCTCCCA 227 * **** ************************************* ****** ******** consensus_5229#0 GTCGCAGCTGCA--TCCGATTCGGACAAATTATTACAACCCC--GCCCAACA-TGTCT-- 647 consensus_5229#1 GTCGCAGCTGCAATCCCGATTCGGACAAATTATTACAAGCCCCGGNCCAACAGTGTACTA 287 ************ *********************** *** * ****** *** consensus_5229#0 -GTGGTCGAGTGGGTCGAGGAAACGCGC-CCGCAAGCGTTNGACGCCCATAATAGAAAAA 705 consensus_5229#1 GGTGGTCGAGTGGGTCGAGGCACAACGCGCCGCAAGCGT--GACGCC-ATAATAGAAAAA 344 ******************* * *** ********** ****** ************ consensus_5229#0 CGACAAG-CGCGAAGGCAGCGTAAGCAGGACCTTGCCAAG--CGGC-GGACGGCAGCCGC 761 consensus_5229#1 CGACAAGACGCGAAGGCAGCGTAAGCAGGACCTTGCCAATGCCGGCTGGACGGCAGCCGC 404 ******* ******************************* **** ************* consensus_5229#0 TCAGGAGCGAATGCGCATCATT-TCCCACCTCGCCCGAAAAGAGA----AGGGTAGCGA- 815 consensus_5229#1 TCAGGAGCGAATGCGCATCATTATCCCACCTCGCCCGCACAAAGAGCACAGGGTAGCGAC 464 ********************** ************** * * *** ********** consensus_5229#0 TGATT-TCGG--AATGCGCG----ACGAGGA--CTGGGATGTGTATAAGCAAATCAGTCG 866 consensus_5229#1 TGATTCTCGGCAAATGCGCGCAACGCAAGGAACCTNGGGCACTTGCTGCGTACTTACCCG 524 ***** **** ******** * **** ** ** * * * * ** consensus_5229#0 CGAAGAGGATAGCGACAATGAGAACGACAGTGAACGTTTG-------------------- 906 consensus_5229#1 CCNCAACNCTCCANGCTCGCCGAAACGCACNGGACTACTGCGNAACCCACTGACCAACTN 584 * * * * *** ** * ** ** consensus_5229#0 ----------------------------- consensus_5229#1 ACCNCTGAACACGCTCTGCGCTNGCGAAG 613 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||