These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence [TGCCGANGCAGAATTGCCCGAGGTTGAAACGTGTTTCTGGAAATGATATCCTGCTTGAAAAACTTCAAATTCATCGAATAAATATGAACGATGATAAGTTGCTGGAAGTAAAAAAGCAAAAACTCGAAAAGCAAAAATCGTACGTAATCAACATGTCTCGGAAGGAACGTAAACGCCAGAAAAAGTTGCAGAACTTGAAAAGGATATTTTTGAAACAAAAGCACGCAGGAGAGCAAGCAAATTAGTGCGTCGAAACATTGACAGAAAATTTCGAAGTTGACGGTTCATGCATTTCATTTCCAAGCATTCCTCTATATTGTTTACCCCCGAATTCCTAAAAGGTGCTGAGCCGCAAACACTTGGGCAAGGGCCTATCGAAAATATTTGGCGGCACACCTATTTAACAATCGGAGATATTTNATCTCTGGCCTTGGCACCCCTCAGTNTGAAGGGTTTCATATCGAAAACCACAGATACCCTCGGTTTGGGGACAAACCGGTAGAAATACTGGGGGACTTAATTAAGCGGNGNACGACCAAATTTTGGCGCACTGACGACTTTACCCAAAAACGCGGGTCGTTTGCCACTTCCAATTAACCTCTTCAAGGCTGGGCACCACACTGGGGAAGACACNGTTTCCTTAACNAAACCCACTTTAGGAATTCCCCGGGCCAACAAGGACTTACTTCTTAAGCCTTCCCGNGCACATTTTCTTTTANCACAAACAATACACACTTCTTCAACCTTGGGTAAACCGGNTTAAANAAATTGCCAAGGGGTAAAGCAAATNAGAACGCCCACACCGCCGATNGCACTACTTTGGCCACGCACTCAGTTTAATTTCCAACAACCTACACTTTTGGGGACATTGGTANCCCACTCTGNTCTTACTGTTCCCAACAAAGCACGGTCTGANTTCCGAGAAAAACCCAGGTTTAGACCCAATTTAATTTCATGCCCGGGCTCTGATGNGATTGACACACCTCATATGGATTGGAANACACGG] [+] EMBL AL696524 [TGCCGANGCAGAATTGCCCGAGGTTGAAACGTGTTTCTGGAAATGATATCCTGCTTGAAAAACTTCAAATTCATCGAATAAATATGAACGATGATAAGTTGCTGGAAGTAAAAAAGCAAAAACTCGAAAAGCAAAAATCGTACGTAATCAACATGTCTCGGAAGGAACGTAAACGCCAGAAAAAGTTGCAGAACTTGAAAAGGATATTTTTGAAACAAAAGCACGCAGGAGAGCAAGCAAATTAGTGCGTCGAAACATTGACAGAAAATTTCGAAGTTGACGGTTCATGCATTTCATTTCCAAGCATTCCTCTATATTGTTTACCCCCGAATTCCTAAAAGGTGCTGAGCCGCAAACACTTGGGCAAGGGCCTATCGAAAATATTTGGCGGCACACCTATTTAACAATCGGAGATATTTNATCTCTGGCCTTGGCACCCCTCAGTNTGAAGGGTTTCATATCGAAAACCACAGATACCCTCGGTTTGGGGACAAACCGGTAGAAATACTGGGGGACTTAATTAAGCGGNGNACGACCAAATTTTGGCGCACTGACGACTTTACCCAAAAACGCGGGTCGTTTGCCACTTCCAATTAACCTCTTCAAGGCTGGGCACCACACTGGGGAAGACACNGTTTCCTTAACNAAACCCACTTTAGGAATTCCCCGGGCCAACAAGGACTTACTTCTTAAGCCTTCCCGNGCACATTTTCTTTTANCACAAACAATACACACTTCTTCAACCTTGGGTAAACCGGNTTAAANAAATTGCCAAGGGGTAAAGCAAATNAGAACGCCCACACCGCCGATNGCACTACTTTGGCCACGCACTCAGTTTAATTTCCAACAACCTACACTTTTGGGGACATTGGTANCCCACTCTGNTCTTACTGTTCCCAACAAAGCACGGTCTGANTTCCGAGAAAAACCCAGGTTTAGACCCAATTTAATTTCATGCCCGGGCTCTGATGNGATTGACACACCTCATATGGATTGGAANACACGG] consensusID : consensus_5232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGAAAACTCGAAAAGCAAAAATCGTACGTAATCAACATGTCTCGGAAGGAACGTAAACGCAAGAAAAAGTTGCAAGAACTTGAAAAGGATATTTTTGAAACAAAAGCAGAGGAGAGCAAGCAAATTGTGCGTCGAAAATTGACAGAAATTTCGAAGTTGACGTTCATGATTTATTTCAAAATTCTTAAATGTTACCCCGATTCTAAAGTGCTGAGCGCAACATTGGAAGGACTATCGAAATTTGCGCACACTATTAACATCGATTTTTTTGCTGACCTAGTTGAGTTATTGAACAATCTGTTGGAAAACGTAGAATTGGGATATAGGGAGCAATTGCACTGCATTCAAACGGTGTTCATCATACTTAGTGGACAAGGAGAAGTTCTAAACATTGATCCGGCAAGATTTTACTCGCATTTTTACAAAAATTTACTGTACGTAAATGCAGGAAAAAACCACGATGATATGCAGACTATTATCAAAACATTGGATGTCATTTTATTCAAACGTCGTCGAAACGTAACATATCACCGCTACGTGAGCTTTGTGAAACGGCTTGCATCGCTATGCCTACAGGTGCTCCCCAATGGATGCCTAGGTCTTATATCTTTAATTCGAAGCTGTATGCACATGAA] [+] EMBL BM607654 [CCGAAAACTCGAAAAGCAAAAATCGTACGTAATCAACATGTCTCGGAAGGAACGTAAACGCAAGAAAAAGTTGCAAGAACTTGAAAAGGATATTTTTGAAACAAAAGCAGAGGAGAGCAAGCAAATTGTGCGTCGAAAATTGACAGAAATTTCGAAGTTGACGTTCATGATTTATTTCAAAATTCTTAAATGTTACCCCGATTCTAAAGTGCTGAGCGCAACATTGGAAGGACTATCGAAATTTGCGCACACTATTAACATCGATTTTTTTGCTGACCTAGTTGAGTTATTGAACAATCTGTTGGAAAACGTAGAATTGGGATATAGGGAGCAATTGCACTGCATTCAAACGGTGTTCATCATACTTAGTGGACAAGGAGAAGTTCTAAACATTGATCCGGCAAGATTTTACTCGCATTTTTACAAAAATTTACTGTACGTAAATGCAGGAAAAAACCACGATGATATGCAGACTATTATCAAAACATTGGATGTCATTTTATTCAAACGTCGTCGAAACGTAACATATCACCGCTACGTGAGCTTTGTGAAACGGCTTGCATCGCTATGCCTACAGGTGCTCCCCAATGGATGCCTAGGTCTTATATCTTTAATTCGAAGCTGTATGCACATGAA] consensusID : consensus_5232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CCGCGCATTTTTACAAAAATTTACTGTACGTAAATGCAGGAAAAAACCACGATAAAATGACATCCAATGTTTTGATAATAGTCTGCATATCATCAAAACATTGGATGTCATTTTATTCAAACGTCGTCGAAACGTAACATATCACCGCTACGTGAGCTTTGTGAAACGGCTTGCAACGCTATGCCTACAGGTGCTCCCCAATGGATGCCTAGGTCTTATATCTTTAATTCGAAGCTGTATGCACATGAATCAACAACTGGACATCCTGCTTGACTCTGAAGCGGTCGTAGGTTCGGGGAAATTCGATCCTTTTAATGATGAACCGGAATTCGCTAATGCTAATTGTACTGCACTTTTTGAAAGTAGCTGCTTGGTACGGCACTACCACCCCTTAATTCGCAAAATGGTAATGAATGTCCTTAAAGGTTCTGACAGCGTTCCCATCAATTCCGGGCGAACTTTAACGCCGGACGAATACTACACTAACTACGATTGCACGGAAATGGTATTCAAC] [+] EMBL BM576592 [CCGCGCATTTTTACAAAAATTTACTGTACGTAAATGCAGGAAAAAACCACGATAAAATGACATCCAATGTTTTGATAATAGTCTGCATATCATCAAAACATTGGATGTCATTTTATTCAAACGTCGTCGAAACGTAACATATCACCGCTACGTGAGCTTTGTGAAACGGCTTGCAACGCTATGCCTACAGGTGCTCCCCAATGGATGCCTAGGTCTTATATCTTTAATTCGAAGCTGTATGCACATGAATCAACAACTGGACATCCTGCTTGACTCTGAAGCGGTCGTAGGTTCGGGGAAATTCGATCCTTTTAATGATGAACCGGAATTCGCTAATGCTAATTGTACTGCACTTTTTGAAAGTAGCTGCTTGGTACGGCACTACCACCCCTTAATTCGCAAAATGGTAATGAATGTCCTTAAAGGTTCTGACAGCGTTCCCATCAATTCCGGGCGAACTTTAACGCCGGACGAATACTACACTAACTACGATTGCACGGAAATGGTATTCAAC] consensusID : consensus_5232#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [AGATCGCCCGAGGTTATTTGAAACAAAAGCAGAGGAGAGCAGCAATTGTGTCGTCGAAAATTGACAGAAATTTCGAAGTTGACGTTCATGATTTATTTCAAAATTCTTAAATGTTACCCCGATTCTAAAGTGCTGAGCGCAACATTGGAAGGACTATCGAAATTTGCGCACACTATTAACATCGATTNTTTNTTCGCTGACCTANTTCGAGTTATNGACACAATCTGCTTCGGACAAACGTACCAATTGGGCATATACGGAGCAATTGCACTGCATTCAAAACGGTGTATCATCACACTTAGTGGACCAAGGACGAAAGTTCTACAACATNCGATACCGCGCACACGATTTNTACTCGCCATTCTTTACCAAAAAATCTNACTGTGACGTAACATTGCAGGANAAAACCACGAAC] [+] EMBL AL696199 [AGATCGCCCGAGGTTATTTGAAACAAAAGCAGAGGAGAGCAGCAATTGTGTCGTCGAAAATTGACAGAAATTTCGAAGTTGACGTTCATGATTTATTTCAAAATTCTTAAATGTTACCCCGATTCTAAAGTGCTGAGCGCAACATTGGAAGGACTATCGAAATTTGCGCACACTATTAACATCGATTNTTTNTTCGCTGACCTANTTCGAGTTATNGACACAATCTGCTTCGGACAAACGTACCAATTGGGCATATACGGAGCAATTGCACTGCATTCAAAACGGTGTATCATCACACTTAGTGGACCAAGGACGAAAGTTCTACAACATNCGATACCGCGCACACGATTTNTACTCGCCATTCTTTACCAAAAAATCTNACTGTGACGTAACATTGCAGGANAAAACCACGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5232#1 ------------------------------------------------------------ consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 TGCCGANGCAGAATTGCCCGAGGTTGAAACGTGTTTCTGGAAATGATATCCTGCTTGAAA 60 consensus_5232#2 ------------------------------------------------------------ consensus_5232#1 -------------------------------------------------------CCGAA 5 consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 AACTTCAAATTCATCGAATAAATATGAACGATGATAAGTTGCTGGAAGTAAAAAAGCAAA 120 consensus_5232#2 ------------------------------------------------------------ consensus_5232#1 AACTCGAAAAGCAAAAATCGTACGTAATCAACATGTCTCGGAAGGAACGTAAACGCAAGA 65 consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 AACTCGAAAAGCAAAAATCGTACGTAATCAACATGTCTCGGAAGGAACGTAAACGCCAGA 180 consensus_5232#2 -----------------CCGCGCATTTTTACAAAAATTT--ACTGTACGTAAATGCAGGA 41 consensus_5232#1 AAAAGTTGCAAGAACTTGAAAAG-GATATTTTTGAAACAAAA-GCAG---AGGAGAGCAA 120 consensus_5232#3 ------------AGATCGCCCGA-GGT-TATTTGAAACAAAA-GCAG---AGGAGAGCAG 42 consensus_5232#0 AAAAGTTGCA-GAACTTGAAAAG-GATATTTTTGAAACAAAA-GCACG-CAGGAGAGCAA 236 consensus_5232#2 AAAAACCACGATAAAATGACATCCAATGTTTTGATAATAGTCTGCATATCATCAAAACAT 101 * * * * ** ** * *** * * * ** consensus_5232#1 GCAA-ATTGTG-CGTCGAAA-ATTGACAGAAA-TTTCGAAGTTGACG-TTCATGA--TTT 173 consensus_5232#3 C--A-ATTGTGTCGTCGAAA-ATTGACAGAAA-TTTCGAAGTTGACG-TTCATGA--TTT 94 consensus_5232#0 GCAA-ATTAGTGCGTCGAAACATTGACAGAAAATTTCGAAGTTGACGGTTCATGCATTTC 295 consensus_5232#2 TGGATGTCATTTTATTCAAACGTCGTCGAAACGTAAC-ATATCACCGCTACGTGAGCTTT 160 * * * *** * * * ** * * * * ** * * ** ** consensus_5232#1 ATTTCAAA--ATTCTTAAATGTTA-----CCCCGA--TTCTAAA---GTGCTGAGC-GCA 220 consensus_5232#3 ATTTCAAA--ATTCTTAAATGTTA-----CCCCGA--TTCTAAA---GTGCTGAGC-GCA 141 consensus_5232#0 ATTTCCAAGCATTCCTCTATATTGTTTACCCCCGAATTCCTAAAAG-GTGCTGAGCCGCA 354 consensus_5232#2 GT---GAAACGGCTTGCAACGCTATGCCTACAGGTGCTCCCCAATGGATGCCTAGGTCTT 217 * ** * * * * * * ** *** ** consensus_5232#1 A-CATTGG----AAGGACTATCGAAA---TTTG----CGCACACTATTAACA-TCGAT-- 265 consensus_5232#3 A-CATTGG----AAGGACTATCGAAA---TTTG----CGCACACTATTAACA-TCGAT-- 186 consensus_5232#0 AACACTTGGGCAAGGGCCTATCGAAAATATTTGGCGGCACACCTATTTAACAATCGGAGA 414 consensus_5232#2 A-TATCTT--------TAATTCGAAGCTGTATG----CACATG-AATCAACAACTGGACA 263 * * ***** * ** * ** * **** * consensus_5232#1 TTTT--TT---GCTGACCTAGTT-GAGTT--ATTGA-ACAATCTGTT---GGAAAACGTA 313 consensus_5232#3 TNTT--TNTTCGCTGACCTANTTCGAGTT--ATNGACACAATCTGCTTCGGACAAACGTA 242 consensus_5232#0 TATT--TNATCTCTGGCCTTGGCACCCCTCAGTNTGAAGGGTTTCATATCGAAAACCACA 472 consensus_5232#2 TCCTGCTTGACTCTGAAGCGGTCGTAGGT---TCGGGGAAATTCGATCCTTTTAATGATG 320 * * * *** * * * * ** consensus_5232#1 G-AA--------TTGGG-ATATAGGG--AGCAATTGCACTGCATTCAA---A-CGGTGT- 356 consensus_5232#3 CCAA--------TTGGGCATATACGG--AGCAATTGCACTGCATTCAA---AACGGTGTA 289 consensus_5232#0 GATACCCTCGGTTTGGGGACAAACCGGTAGAAATACTGGGGGACTTAATTAAGCGGNGNA 532 consensus_5232#2 AACC-----------GGAATTCGCTAATGCTAATTGTACTGCACTTTTT------GAAAG 363 ** * *** * * * * consensus_5232#1 TCATCATACTT-AGTGGAC-AAGGA--------GAAGTTCTA-AACATT-GATCCGGCA- 403 consensus_5232#3 TCATCACACTT-AGTGGACCAAGGACG------AAAGTTCTACAACATNCGATACCGCGC 342 consensus_5232#0 CGACCAAATTTTGGCGCACTGACGACTTTACCCAAAAACGCGGGTCGTTTGCCACTTCCA 592 consensus_5232#2 TAGCTGCTTGGTACGGCACTACCACCCCT----TAATTCGCAAAATGGTAATGAATGTCC 419 * ** ** consensus_5232#1 ----AGATTTT----AC-T---CGC--ATTTTTAC---AAAAATTTACTGT-ACGTAAA- 444 consensus_5232#3 ACACGATTTNT----AC-T---CGCCATTCTTTACCAAAAAATCTNACTGTGACGTAACA 394 consensus_5232#0 ATTAACCTCTTCAAGGC-TGGGCACCACACTGGGGAAGACACNGTTTCCTTAACNAAACC 651 consensus_5232#2 TTAAAGGTTCTGACAGCGTTCCCATCAATTCCGGGCGAACTTTAACGCCGGACGAATACT 479 * * * * * * * * consensus_5232#1 -TGCAGGAAAAAACCACGATGATATGCAGACTATTATCAAAACATTGGATGT---CATTT 500 consensus_5232#3 TTGCAGGANAAAACCACGAAC--------------------------------------- 415 consensus_5232#0 CACTTTAGGAATTCCCCGGGCCAACAAGGACTTACTTCTTAAGCCTTCCCGNGCACATTT 711 consensus_5232#2 ACACTAACTACGATTGCACGGAAATGGTATTCAAC------------------------- 514 * * consensus_5232#1 TATTCAAACGTCGTCGAAACGTAACATATCACCGCTACGTGAGCTTTGTGAAACGGCTTG 560 consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 TCTTTTANCACAAACAATACACACTTCTTCAACCTTGGGTAAACCGGNTTAAANAAATTG 771 consensus_5232#2 ------------------------------------------------------------ consensus_5232#1 CATCGCTATGCCTACAGGTGCTCCCCAATGGATGCCTAGGTCTTATATCTTTAATTCGAA 620 consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 CCAAGGGGTAAAGCAAATNAGAACGCCCACACCGCCGATNGCACTACTTTGGCCACGCAC 831 consensus_5232#2 ------------------------------------------------------------ consensus_5232#1 GCTGTATGCACATGAA-------------------------------------------- 636 consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 TCAGTTTAATTTCCAACAACCTACACTTTTGGGGACATTGGTANCCCACTCTGNTCTTAC 891 consensus_5232#2 ------------------------------------------------------------ consensus_5232#1 ------------------------------------------------------------ consensus_5232#3 ------------------------------------------------------------ consensus_5232#0 TGTTCCCAACAAAGCACGGTCTGANTTCCGAGAAAAACCCAGGTTTAGACCCAATTTAAT 951 consensus_5232#2 ------------------------------------------------------------ consensus_5232#1 ------------------------------------------------------- consensus_5232#3 ------------------------------------------------------- consensus_5232#0 TTCATGCCCGGGCTCTGATGNGATTGACACACCTCATATGGATTGGAANACACGG 1006 consensus_5232#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||