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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1125 fasta sequence
[AAGCGACCATGAACGCACACAGGGCGACCCAGACCACCACAACGNGAAACNANNTCNNTAACTTAGGCTCGAGGCAAGAATCTGCCCCGAGGTTTAATTTCCTGCTTCCCTCAATGCGTGCTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCTGCCTGCCCCCATCATGACGCGCACCGTGATCGTCCTGTTGCGCACTAGGTACCGCTAGTAGGTCGCTAGCCATGAGAGCCACCCGTTGCTGCTTCCAGGCCCCAGTGCCTGCGGTTACCCTTATCGGCCTTTGTTNGCAAGCCGGAAACCGGAAACCGGCACGCCTTTTTGNCCCCCGGGGCTTGGGAAGTGGACAGCCAACCTGGACCGGGGTCAAGGCACATGAAAGCCAAACCCGGGGCCCGGGCTAAACCACCTTAATTCCCGCCAAAAGCCCCGATTGGTTCCCCGGGACCGGGTTAAACCCAAGTTAATTCCCCCAAAAGGTCCTGGGGACCCAAAAAGGACGGTTTCCCCCCGGGATTGGGCNCCGAGCGGCCGGAACGGGCACGCGAATTGTTCCCACGCCCGGGGCGTTNATTCCAACACCACGCCCGGAAGGCCCACGGCGGCAGAACCCTNGGAGCACAGCCCCGACAAGAGAACCGGACACAGCAACCAAAGCCNGGGAGGTTAACCACCAAAGGACGTGCAAGCGTGCGAACTGGCCAAGGAGTTGCCCGGGAAAACCAAAAGACACTGGGAACCGGGGACACATTTCCTGGAANGATGCGGGAAACGAGCACCANCTGGGNACCTTAAAACANCCAACCTTTTNGCCAGTGGGCCTTTATTAAACCTGGAAACACGGAAAACNTNTAAAACGGGAANACGNCAATTTAGGGCTTTCAACCATTAGGGGANNGCACGNGCCCCNCTCTGANGGAACAGATCCCNGAACACGTNNGCGGCGCCAGNACATTCTGGAACTAAGACCCCAAAAAGTCGGTTTAGGAANGGGTCAGCCTTCACAAGACTTATGGATGTGCTACCCTGGGCCTGGCNGCCGAAGAGGGANGGGGCTTTTTACAATCTGGNCCCCCCCTGGGANCATGGTTATCCACCTGGATTCCNCCCCCTTTAAGAA]
[+] EMBL AL696586 [AAGCGACCATGAACGCACACAGGGCGACCCAGACCACCACAACGNGAAACNANNTCNNTAACTTAGGCTCGAGGCAAGAATCTGCCCCGAGGTTTAATTTCCTGCTTCCCTCAATGCGTGCTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCTGCCTGCCCCCATCATGACGCGCACCGTGATCGTCCTGTTGCGCACTAGGTACCGCTAGTAGGTCGCTAGCCATGAGAGCCACCCGTTGCTGCTTCCAGGCCCCAGTGCCTGCGGTTACCCTTATCGGCCTTTGTTNGCAAGCCGGAAACCGGAAACCGGCACGCCTTTTTGNCCCCCGGGGCTTGGGAAGTGGACAGCCAACCTGGACCGGGGTCAAGGCACATGAAAGCCAAACCCGGGGCCCGGGCTAAACCACCTTAATTCCCGCCAAAAGCCCCGATTGGTTCCCCGGGACCGGGTTAAACCCAAGTTAATTCCCCCAAAAGGTCCTGGGGACCCAAAAAGGACGGTTTCCCCCCGGGATTGGGCNCCGAGCGGCCGGAACGGGCACGCGAATTGTTCCCACGCCCGGGGCGTTNATTCCAACACCACGCCCGGAAGGCCCACGGCGGCAGAACCCTNGGAGCACAGCCCCGACAAGAGAACCGGACACAGCAACCAAAGCCNGGGAGGTTAACCACCAAAGGACGTGCAAGCGTGCGAACTGGCCAAGGAGTTGCCCGGGAAAACCAAAAGACACTGGGAACCGGGGACACATTTCCTGGAANGATGCGGGAAACGAGCACCANCTGGGNACCTTAAAACANCCAACCTTTTNGCCAGTGGGCCTTTATTAAACCTGGAAACACGGAAAACNTNTAAAACGGGAANACGNCAATTTAGGGCTTTCAACCATTAGGGGANNGCACGNGCCCCNCTCTGANGGAACAGATCCCNGAACACGTNNGCGGCGCCAGNACATTCTGGAACTAAGACCCCAAAAAGTCGGTTTAGGAANGGGTCAGCCTTCACAAGACTTATGGATGTGCTACCCTGGGCCTGGCNGCCGAAGAGGGANGGGGCTTTTTACAATCTGGNCCCCCCCTGGGANCATGGTTATCCACCTGGATTCCNCCCCCTTTAAGAA]
consensusID : consensus_5243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 680 fasta sequence
[GGCAGAATTGCACGAGGNTAATCTCATCAATCAATTAATTTCCGCTCCCTCAAGCGTGCTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCGCCGCCCCCATCATGACGCGCACCGTGATCGTCCTGTTCGCACTGGTCGCTGTGGTCGCTGCCGAGCCACCGTTGCGCTTCCGGCCCCGTGCCGCGTCCTTCGCTGTGCAGCGACCGAACGCTCGCTTTGCCCGGCTGGAGGACGCACCGCCGGCAGCAGAGCAACCGGCCGGCTACCACTATCCCAAGCCGATGTCCGCTGGCTACCACTATCCCAAGCCGGACCAAGCGTTCCCGCTGCCGGGCGAGGAGATGCCACCGGCTTTCACCACCGAGCAGGCACCGGCCGCCGAGACGACGACACCGGTCCAGGAGGAGCAGTCGACAACGACGGATTCGAGCGACACCATGACTACCACCGCGGCTTACGAAGACTACGAAGATGCTACTGGC-GCCCCGGAACCGACGGCCGATGATACCAACGTGAGCGCTAAGCTGCGCCGCCGCCAGCAGCTTAACGCCCGCCGTCCCGCTCCCCTAACGCTGGTCAATCGGCCGAGCCAGCGTCTGGAGGAACTGCCTGCCGCCGTGTACGTGGGCCGACCAGGAGCAGCAGCAGCAGCAGGTGGTACAGCAGCGTCCGGT]
[+] EMBL AL696694 [GGCAGAATTGCACGAGGNTAATCTCATCAATCAATTAATTTCCGCTCCCTCAAGCGTGCTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCGCCG CCCCATCATGACGCGCACCGTGATCGTCCTGTTCGCACTGGTCGCTGTGGTCGCTGCCGAGCCACCGTTGCGCTTCCGGCCCCGTGCCGCGTCCTTCGCTGTGCAGCGAACGAACGCACGCTTTGCCCGGCTGGAGGACGCACCG CGGCAGCAGAGCAACCGGCCGG TACCACTATCCCAAGCCGATGTCCGCCGGCTACCA TATCCCAAGCCGGACCAAGCGTTCCCG TGCCGGGCGAGGAGATGTCACCGGCTTTCACCACCGAGCAGGCACCGGCCGCCGAGACGACGACACCGGTCCAGGAGGAGCAGTCGACAACGACGGAATCGAGCGACACCATGACTACCACTGCGGCTTACGAAGACTACGAAGATGCTACTGGCAGCCCCGGAACCGACGG CGATGATACCAACGTGAGCGCTAAGCTGCGCC ]
[+] EMBL BM634578 [ ccgATCAATCAATTAATTTCCGCTCCCTCAAGCGTGCTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCGCCGCCCCCATCATGACGCGCACCGTGATCGTCCTGTTCGCACTGGTCGCTGTGGTCGCTGCCGAGCCACCGTTGCGCTTCCGGCCCCGTGCCGCGTCCTTCGCTGTGCAGCGACCGAACGCTCGCTTTGCCCGGCTGGAGGACGCACCGCCGGCAGCAGAGCAACCGGCCGGCTACCACTATCCCAAGCCGATGTCCGCTGGCTACCACTATCCCAAGCCGGACCAAGCGTTCCCGCTGCCGGGCGAGGAGATGCCACCGGCTTTCACCACCGAGCAGGCACCGGCCGCCGAGACGACGACACCGGTCCAGGAGGAGCAGTCGACAACGACGGATTCGAGCGACACCATGACTACCACCGCGGCTTACGAAGACTACGAAGATGCTACTGGC GCCCCGGAACCGACGGCCGATGATACCAACGTGAGCGCTAAGCTGCGCCGCCGCCAGCAGCTTAACGCCCGCCGTCCCGCTCCCCTAACGCTGGTCAATCGGCCGAGCCAGCGTCTGGAGGAACTGCCTGCCGCCGTGTACGTGGGCCGACCAGGAGCAGCAGCAGCAGCAGGTGGTACAGCAGCGTCCGGT]
[+] EMBL BM639986 [ ccgAATCAATTAATTTCCGCTCCCTCAAGCGTGCTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCGCCGCCCCCATCATGGGGGGCGCCGTGATCGTCCTGTTCGCACTGGTCGCTGTGGTCGCTGCCGAGCCACCGTTGCGCTTCCGGCCCCGTGCCGCGTCCTTCGCTGTGCAGCGACCGAACGCTCGCTTTGCCCGGCTGGAGGACGCACCGCCGGCAGCAGAGCAACCGGCCGGCTACCACTATCCCAAGCCGATGTCCGCTGGCTACCACTATCCCAAGCCGGACCAAGCGTTCCCGCTGCCGGGCGAGGAGATGCCACCGGCTTTCACCACCGAGCAGGCACCGGCCGCCGAGACGACGACACCGGTCCAGGAGGAGCAGTCGACAACGACGGATTCGAGCGACACCATGACTACCACCGCGGCTTACGAAGACTACGAAGATGCTACTGGC GCCCCGGAACCGACGGCCGATGATACCAACGTGAGCGCTAAGCTGCGCCGCCGCCAGCAGCTTAACGCCCGCCGTCCCGCTCCCCTAACGCTGGTCAATCGGCCGAGCCAGCGTCTGGAGGAACTGCCTGCCGCCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5243#0 AAGCGACCATGAACGCACACAGGGCGACCCAGACCACCACAACGNGAAACNANNTCNNTA 60
consensus_5243#1 -------------------------------------------------------GGCAG 5
consensus_5243#0 ACTTAGGCTCGAGGCAAGAATCTGCCCCGAGGTTTAATTTCCTGCTTCCCTCAATGCGTG 120
consensus_5243#1 AATT--GCACGAGGNT--AATCTCATCAATCAATTAATTTCCG--CTCCCTCAA-GCGTG 58
* ** ** ***** ***** * ********* ******** *****
consensus_5243#0 CTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATCTGCCTGCCCCCATCATGACGCGC 180
consensus_5243#1 CTTGTTTCCTGTTTGCCGCAGCAGCAAAAACCTTATC--GCCGCCCCCATCATGACGCGC 116
************************************* * ******************
consensus_5243#0 ACCGTGATCGTCCTGTTGCGCACTAGGTACCGCTAGTAGGTCGCTAGCCATGAGAGCCAC 240
consensus_5243#1 ACCGTGATCGTCCTGTT-CGCACTGGTCGCTGT-----GGTCGCTGCC-----GAGCCAC 165
***************** ****** * * * ******* * *******
consensus_5243#0 CCGTTGCTGCTTCCAGGCCCCAGTGCCTGCGGTTACCCTTATCGGCCTTTGTTNGCAAGC 300
consensus_5243#1 C-GTTGC-GCTTCCGG--CCCCGTGCC--------------GCGTCCTTCGCTGTGCAGC 207
* ***** ****** * *** ***** ** **** * * ***
consensus_5243#0 CGGAAACCGGAAACCGGCACGCCTTTTTGNCCCCCGGGGCTTGGGAAGTGGACAGCCAAC 360
consensus_5243#1 ----GACCGAACGCTCGC------TTTGCCCGGCTGGAGGACGCACCGCCGGCAGCAGAG 257
**** * * ** *** * * ** * * * * **** *
consensus_5243#0 CTGGACCGGGGTCAAGGCACATGAAAGCCAAACCCGGGGCC-CGGGCTAA-ACCACCTTA 418
consensus_5243#1 C--AACCGG---CCGGCTACCACTATCCCAAGCCGATGTCCGCTGGCTACCACTATCCCA 312
* ***** * * ** * **** ** * ** * ***** ** * * *
consensus_5243#0 ATTCCCGCCAAAAGCCCCGATTGGTTCCCCGGGACCGGGTTAAACCCAAGTTAATTCCCC 478
consensus_5243#1 AGCCGGACCAAGCGTTCCCGCTG----CCGGGCGAGGAGATGCCACCGGCTTTCACCACC 368
* * **** * ** ** ** ** * * * ** ** * **
consensus_5243#0 CAAAAGGTCCTGGGGACCCAAAAAGGACGGTTTCCCCCCGGGATTGGGCNCCGAGCGGCC 538
consensus_5243#1 GAGCAGGCACCGGCCGCC--GAGACGACGACACCGGTCCAGGA----GGAGCAGTCGACA 422
* *** * ** ** * * **** * ** *** * * ** *
consensus_5243#0 GGAACGGGCACGCGAATTGTTCCCACGCCCGGGGCGTTNATTCCAACACCACGCCCGGAA 598
consensus_5243#1 ACGACGGATTCGAGCGACACCATGACTACCACCGCGGCT-TACGAAGACTACG---AAGA 478
**** ** * ** ** *** * * ** ** *** *
consensus_5243#0 GGCCCACGGCGGC--AGAACCCTNGGAGCACAGCCCCGACAAGAGAACCGGACACAGCAA 656
consensus_5243#1 TGCTACTGGCGCCCCGGAACCGACGGCCGATGATACCAACGTGAGCGCTAAGCTGCGCCG 538
** **** * ***** ** * ** ** *** * * **
consensus_5243#0 CCAAAGCCNGGGAGGTTAACCACCAAAGGACGTGCAAGCGTGCGAACTGGCCAAGGAGTT 716
consensus_5243#1 CCG----CCAGCAGCTTAACGCCC----GCCGTCCCGCTCCCCTAAC--GCTGGTCAATC 588
** * * ** ***** ** * *** * * *** ** * *
consensus_5243#0 GCCCGGGAAAAC--CAAAAGACACTGGGAACCGGGGACACATTTCCTGGAANGATGCGGG 774
consensus_5243#1 GGCCGAGCCAGCGTCTGGAGGAACTG----CCTGCCGCCGTGTACGTGGGCCGACCAGGA 644
* *** * * * * ** **** ** * * * * *** ** **
consensus_5243#0 AAACGAGCACCANCTGGGNACCTTAAAACANCCAACCTTTTNGCCAGTGGGCCTTTATTA 834
consensus_5243#1 GCAGCAGCAGCAGCAGGTGGTACAGCAGCGTCCGGT------------------------ 680
* **** ** * ** * * **
consensus_5243#0 AACCTGGAAACACGGAAAACNTNTAAAACGGGAANACGNCAATTTAGGGCTTTCAACCAT 894
consensus_5243#1 ------------------------------------------------------------
consensus_5243#0 TAGGGGANNGCACGNGCCCCNCTCTGANGGAACAGATCCCNGAACACGTNNGCGGCGCCA 954
consensus_5243#1 ------------------------------------------------------------
consensus_5243#0 GNACATTCTGGAACTAAGACCCCAAAAAGTCGGTTTAGGAANGGGTCAGCCTTCACAAGA 1014
consensus_5243#1 ------------------------------------------------------------
consensus_5243#0 CTTATGGATGTGCTACCCTGGGCCTGGCNGCCGAAGAGGGANGGGGCTTTTTACAATCTG 1074
consensus_5243#1 ------------------------------------------------------------
consensus_5243#0 GNCCCCCCCTGGGANCATGGTTATCCACCTGGATTCCNCCCCCTTTAAGAA 1125
consensus_5243#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||