These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCACCTACGACTACTCCGCACACATCATGGACCTGGGACCGACCGGTTTCGTCGACGTCGATGTAGCGACGATGACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTCTACATCTGGATGCAGGACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGCGGTAACATTCTCGTCGACTGGATGGCAACATTTTCGTCAACATCATCACGACG] [+] EMBL AL929870 [ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCACCTACGACTACTCCGCACACATCATGGACCTGGGACCGACCGGTTTCGTCGACGTCGATGTAGCGACGATGACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTCTACATCTGGATGCAGGACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGCGGTAACATTCTCGTCGACTGGATGGCAACATTTTCGTCAACATCATCACGACG] consensusID : consensus_5245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence [AAACTCCCCCNAGGTTAGTTTGTGTTTGTGTGTGTGCGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTA-CATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGGCAATGTGTACTGGTAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGAATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGAGGGCTGACGAAAAATTTGTATGGTTGTTTGAACCAGGCATCTAGCTCGGAAATAGTATGTGCACATGTATGTTAAATGCGTAT] [+] EMBL AL932301 [AAACTCCCCCNAGGTTAGTTTGTGTTTGTGTGTGTGCGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTA CATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGGCAATGTGTACTGGTAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGAATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGAGGGCTGACGAAAAATTTGTATGGTTGTTTGAA ] [+] EMBL BX626638 [ GTTGATTC AATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGACGGAGGTTGAAGATGAAGTGCAACGCAACACCGCTATGTCGGCGAACATGAACAACTACATCGACGTGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCGATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCACTTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGCACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAAGTATGGCGAGG AATGTGTACTGGTAGAATGTGCAACG AGGAAGAATT GTTCACCAGAATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGCGTTGATTCAGTACAAAGTACATGAGGGCTGACGAAAAATTTGTATGGTTGTTTGAACCAGGCATCTAGCTCGGAAATAGTATGTGCACATGTATGTTAAATGCGTAT] consensusID : consensus_5245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTGTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTTGAAGATGAAGTGCAACGCAAAAACCGCTAATGTCGGGCGGAAAACCATTGAAAACAAATTTACAATTCCGGAACCGGTTGGGGTTGGATTGGAATTTCCAAAGTTTGGGAACCCGGTTGGGCATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGCCTGGCCCCNGGAATTGGTTGGGTTCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGCCCCAAAATCCCTGGAATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAACTTTAAACCCAAAACGAGGCCGGATGGTTTACCCAAGAAGCCAATTTCCANACCAAGGGTTGGTTGGGGGCCCCGGGCGAAAATNGGCGCAAACACATTGGCCCGGGAATTCGCAATTTGGCCAACCTTTAACCGGGAAGGCCGG] [+] EMBL AL696606 [AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTGTGTTTGTGTGTGTGCTGTTGATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACTGGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTTGAAGATGAAGTGCAACGCAAAAACCGCTAATGTCGGGCGGAAAACCATTGAAAACAAATTTACAATTCCGGAACCGGTTGGGGTTGGATTGGAATTTCCAAAGTTTGGGAACCCGGTTGGGCATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGCCTGGCCCCNGGAATTGGTTGGGTTCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGCCCCAAAATCCCTGGAATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAACTTTAAACCCAAAACGAGGCCGGATGGTTTACCCAAGAAGCCAATTTCCANACCAAGGGTTGGTTGGGGGCCCCGGGCGAAAATNGGCGCAAACACATTGGCCCGGGAATTCGCAATTTGGCCAACCTTTAACCGGGAAGGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5245#0 ----ATCCCCCCGAGGTTTAGTTTGTCAGAGTGTGTTTGCTGTTTGTGTGTGTGCTGTTG 56 consensus_5245#1 -----------------AAACTCCCCCNAGGTTAGTTTG-TGTTTGTGTGTGTGC-GTTG 41 consensus_5245#2 AGGCAGAATCGCAGAGGNNTAGTTGTCAGAGTGTGTTTG-TGTTTGTGTGTGTGCTGTTG 59 * ** ***** *************** **** consensus_5245#0 ATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACT 116 consensus_5245#1 ATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACT 101 consensus_5245#2 ATTCAAATTGAACTTGAAGGAGCAGAACGCCCAAAGCTTTAAAATGCGTATCCTTTTACT 119 ************************************************************ consensus_5245#0 GGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAG--ACGGAGGTT 174 consensus_5245#1 GGTGGCTTTCGGGCTCATCTGCGCCCTA-CATCGGTTGGTGGTTACGAG--ACGGAGGTT 158 consensus_5245#2 GGTGGCTTTCGGGCTCATCTGCGCCCTAGCATCGGTTGGTGGTTACGAGGCACGGAGGTT 179 **************************** ******************** ********* consensus_5245#0 GAAGATGAAGTGCAACGCAACA-CCGCTA-TGTCGGCGAACATGAACAACTACATCGACG 232 consensus_5245#1 GAAGATGAAGTGCAACGCAACA-CCGCTA-TGTCGGCGAACATGAACAACTACATCGACG 216 consensus_5245#2 GAAGATGAAGTGCAACGCAAAAACCGCTAATGTCGG-GCGGAAAACCATTGAAAACAAAT 238 ******************** * ****** ****** * * * ** * * * * consensus_5245#0 TGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCG 292 consensus_5245#1 TGGTGATGATTCAAGTTGGACCGTGGATGAACACGCATCTGGTTCCCATGGCGCTGCCCG 276 consensus_5245#2 TTACAAT--TCCGGAACCGGTTGGGGTTGGATTGGAAT-----TTCCAAAGTTTGGG--A 289 * ** * * * * ** ** * * ** * *** * * consensus_5245#0 ATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCAC 352 consensus_5245#1 ATGTGGTCGAAGGATTTGAGCATCGCCCAATCCTGATCACCTACCATGGCGAGCTGGCAC 336 consensus_5245#2 ACCCGGTTGGGCATTGAAAACAACGGCCATTCTTGGGGTTTTCCCCCAATTGGGCGGC-C 348 * *** * * * ** ** *** ** ** * ** * *** * consensus_5245#0 TTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGC 412 consensus_5245#1 TTACCAACGGCGTGTTCCACACCATTCACAGTGTGGGCCGCAATGGAAATGCGATGATGC 396 consensus_5245#2 TGGCCCCNGGAATTGGTTGGGT--TCCGGAAACGGGGATTCTTGGGAGGCCAAATTCCGC 406 * ** ** * * * * *** * *** ** ** consensus_5245#0 ACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGTCGGTTTCAC 472 consensus_5245#1 ACTACGACCGTCAGTTGCTACGCGTCGCCGTCGGAGCCAACATTCGACAGCTCGGTGTAA 456 consensus_5245#2 CCCAAAATC-CCTGGAATTCCAAGCCTTAAACCCAATTGGGGCGGAAGGCCTTGGGCCAA 465 * * * * * * * * * * * * * * * consensus_5245#0 CTACGACTACTCCGCACACATCAT--GGACCTGGGACC--GACCGGTTTCGTCGACGTCG 528 consensus_5245#1 GTATGGCGAGGCAATGTGTACTGGTAGAATGTGCAACGCAGGAAGAATTCGTTCACCAGA 516 consensus_5245#2 CTTTAA--ACCCAAAACGAGGCCGGATGGTTTACCCAAGAAGCCAATTTC-CANACCAAG 522 * * * * *** ** consensus_5245#0 ATGTAGCGACGAT---GACTTTCACACAGACGAGTTCATCATCGCACTTGACGGCATTTC 585 consensus_5245#1 ATTTGGTTAACGTCTGGGTTGGTAGTTGGGTCCGCTTCTTGGAAAGTCGCTCGATAGGGC 576 consensus_5245#2 GGTTGGTTGGGG----GCCCCGGGCGAAAATNGGCGCA--AACACATTGGCCCGGGAATT 576 * * * * * consensus_5245#0 TACATCTGGATGCAGGACTTCCGCTAACAACATGGGCAACCTAAACATTCGCTTCCGC-- 643 consensus_5245#1 GTTGATTCAGTACAAAGTACATGAGGGCTG-ACGAAAAATTTGTATGGTTGTTTGAACCA 635 consensus_5245#2 CGCAATTTGGC-CAACCTTTAACCGGGAAGGCCGG------------------------- 610 * ** * consensus_5245#0 GGTAACATTCTCGTCGACTGGATGGCAACATTTTCGTCAACATCATCACGACG 696 consensus_5245#1 GGCATCTAGCTCGGAAATAGTATGTGCACATGTATGTTAAATGCGTAT----- 683 consensus_5245#2 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||