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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 769 fasta sequence
[CAGAATCCCCCCGAGGTTTTAAGCTTTCAATGCGCATTGCGTTGCTGCACACCAACACACAGCACGCATCATCATCCTCTAGTAGTGCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTTTGGTTCATTATCTATCCTCGGACAGTTTAAGTGCTGTTTTTTTTGTGTGTGTGCAACTAATTCCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGTTGTGGTTGGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGCCGGCATCTTGGGGCAGGGGTAGGCAACAGAGAGCAAGCGAGCAGGAGCAAAGCGTGCGATACAGTCATTTNNTAGTGTGTCAACGGACTACANGTCTCTTTCTTTCNNNTCTCTCTAACGCAATTCCAACGTTGTCCCTNGTACATACACAATCTTTATTCCTTACCAAACCTACCTACCTAACTACCTACCTCCCGCGCAA-CCATTTGCGGGATAAANACGGAAACAGAACAAGGCAACAAACTACACTAGGCCGTGTGCGTGCAGT-ACAGGTACGAGCACAAATGTCCACAATATGCGCA-CTTTCGCCTTG-TGCGTATGTGCGAG-ATTCATCCTAGGAGATCCAAAGTAGCAGGTAGG-CAGAC-AGGCAGGAGGTNTGCCTAGCACTGGAGTNCTCCATCGCGCCAGGCAAAGGGGGAAGAGAAAAAGCA]
[+] EMBL AL932988 [CAGAATCCCCCCGAGGTTTTAAGCTTTCAATGCGCATTGCGTTGCTGCACACCAACACACAGCACGCATCATCATCCTCTAGTAGTGCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTTTGGTTCATTATCTATCCTCGGACAGTTTAAGTGCTGTTTTTTTTGTGTGTGTGCAACTAATTCCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGTTGTGGTTGGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGCCGGCATCTTGGGGCAGGGGTAGGCAACAGAGAGCAAGCGAGCAGGAGCAAAGCGTGCGATACAGTCATTTNNTAGTGTGTCAACGGACTACANGTCTCTTTCTTTCNNNTCTCTCTAACGCAATTCCAACGTTGTCCCTNGTACATACACAATCTTTATTCCTTACCAAACCTACCTACCTAACTACCTACCTCCCGCGCAA CCATTTGCGGGATAAANACGGAAACAGAACAAGGCAACAAACTACACTAGGCCGTGTGCGTGCAGT ACAGGTACGAGCACAAATGTCCACAATATGCGCA CTTTCGCCTTG TGCGTATGTGCGAG ATTCATCCTAGGAGATCCAAAGTAGCAGGTAGG CAGAC AGGCAGGAGGTNTGCCTAGCACTGGAGTNCTCCATCGCGCCAGGCAAA ]
[+] EMBL BX466101 [CAGAATCGCCACGAGGNTATAAGCTTTCAATGCGCATTGCGTTGC GCACACCAACACAC GCACGCATCATCATCCTCTAGTAG GCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTTTGGTTCATTATCTATCCTCGGACAGTTTAAGTGCTGTTTTTTTTGTGTGTGTGCAACTAATTCCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGTTGTGGTTGGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGCCGGCATCTTGGGGCA GGGTAGGCAA AGAGAGCAAGCGAG AGGAGCAAAGCGTGCGATACAGTCATTT TTAGTGTGT AA GGA TA A GTCTCTTTCTTT T TTTTTAA G AATTCCAAC TT TCCCTTGTACATACACAATCTTTATTCCTTACCAAACCTACCTACCTAACTACCTACCTCCCGCGCAACCCATTTGCGGGATAAA ACGGAAA AGAACAAGGCAACAAACTACACTAGGCCGTGTGCGTGCAGTCACAGGTACGAGCACAAATGTCCACAATATGCGCACCTTTCGCCTTGTTGCGT TGTGCGAGAATTCATCCTA GAGATCC AAGTAGCA GTAGGACAGACAAGGCAGGNTGT TGCCTAGCACTGTTGT CTCCATCG GCCANGGAAAGGGGGAAGAGAAAAAGCA]
consensusID : consensus_5251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGAGCAGATCGGCCCAGGCTTTAACTTTCAATGCGCATTGCGTTGCGCACACCAACACACTGCACGCATCATCATCCTCTAGTAGGCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTTTGGTTCATTATCTATCCTCGGACAGTTTAACATGCTGTTTAAATGTGTGTGTGCAACTAATTCCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGTATGTGGTTGGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGCGGCATCTTGGGGCAGGGTAGGCACAAGAGAGCAAGCGAGAGGAGCAAAGCGTGCCGATACAGTCATTCTNTNNAGTGTGTCAAGGATAAGTCTCTTTCTTTTATTTAAAGAATTCCAACTTTCCCTTGTACATACACAATCTTTATTCCTTACCAAACTAACTAACTAACTACCTAACTCCCGGCAAACCATTTTGCGGGATAAAACGGCAAAAGAACCAAGGCAACAAACTACCACTAGGCGTGTGCGTGCAGTACCAGGTAACGAGCACAAATTGTCCACCAATATGC]
[+] EMBL AL696752 [CCGAGCAGATCGGCCCAGGCTTTAACTTTCAATGCGCATTGCGTTGCGCACACCAACACACTGCACGCATCATCATCCTCTAGTAGGCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTTTGGTTCATTATCTATCCTCGGACAGTTTAACATGCTGTTTAAATGTGTGTGTGCAACTAATTCCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGTATGTGGTTGGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGCGGCATCTTGGGGCAGGGTAGGCACAAGAGAGCAAGCGAGAGGAGCAAAGCGTGCCGATACAGTCATTCTNTNNAGTGTGTCAAGGATAAGTCTCTTTCTTTTATTTAAAGAATTCCAACTTTCCCTTGTACATACACAATCTTTATTCCTTACCAAACTAACTAACTAACTACCTAACTCCCGGCAAACCATTTTGCGGGATAAAACGGCAAAAGAACCAAGGCAACAAACTACCACTAGGCGTGTGCGTGCAGTACCAGGTAACGAGCACAAATTGTCCACCAATATGC]
consensusID : consensus_5251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[ACCCACGCGTCCGGCAACACCATCCTGCCGCCGCAAGCCTTCGTCAAGATGGAATCGGTCGAGATTGACAACGATGCGTCGCAGTACATTCTCTACACGGATTAAACGTGACGTGTGGAGAGGAACGGGCGGAAGAGAAGAGTGCACTTGAGCGGAGAGGGAGAGAGGGATGCTGTGGTGCACAGTCGCGTTTGTTGATGCACACGCACGTTTTGCCATTTATTGTGTTTGATAAGCGCTCGGCGCGCGCTAGGACATGCTAGAGAGAGAGAGAGAGAGAATACAGTCGAATTTGACCGAGGACACGCGAAAGAGATAGCAACAGTGGTAACAAAACAATTGTGATAGAAGGGTATTGAGGATCACAACCAGTAGCCAGTAGCGAAGGAAACAAATAACGCCCCATGATCGATCATTCACTCGAAGAGGATAACAAAAAAGCGGTTGCAAAATCCTTAAGCTTTCAATGCGCATTGCGTTGCGCACACCAACACACGCACGCATCATCATCCTCTAGTAGGCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCCACTTTCAGTTTGT]
[+] EMBL BM640356 [ACCCACGCGTCCGGCAACACCATCCTGCCGCCGCAAGCCTTCGTCAAGATGGAATCGGTCGAGATTGACAACGATGCGTCGCAGTACATTCTCTACACGGATTAAACGTGACGTGTGGAGAGGAACGGGCGGAAGAGAAGAGTGCACTTGAGCGGAGAGGGAGAGAGGGATGCTGTGGTGCACAGTCGCGTTTGTTGATGCACACGCACGTTTTGCCATTTATTGTGTTTGATAAGCGCTCGGCGCGCGCTAGGACATGCTAGAGAGAGAGAGAGAGAGAATACAGTCGAATTTGACCGAGGACACGCGAAAGAGATAGCAACAGTGGTAACAAAACAATTGTGATAGAAGGGTATTGAGGATCACAACCAGTAGCCAGTAGCGAAGGAAACAAATAACGCCCCATGATCGATCATTCACTCGAAGAGGATAACAAAAAAGCGGTTGCAAAATCCTTAAGCTTTCAATGCGCATTGCGTTGCGCACACCAACACACGCACGCATCATCATCCTCTAGTAGGCGCGTGCATGTATGCGTTTGATGCTAGCACGCAGCCACTTTCAGTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5251#0 --------------CAGAATCCCCCCGAGGTTTTAAGCTTTC---AATGCGCATTGCGTT 43
consensus_5251#1 -----------CCGAGCAGATCGGCCCAGGCTTTAA-CTTTC---AATGCGCATTGCGTT 45
consensus_5251#2 ACCCACGCGTCCGGCAACACCATCCTGCCGCCGCAAGCCTTCGTCAAGATGGAATCGGTC 60
* * ** * *** ** * * * **
consensus_5251#0 GCTGCACACCAACACACAGCACGCATCATCATCCTCTAGTAGTGCGCGTGCATGTATGCG 103
consensus_5251#1 GC-GCACACCAACACACTGCACGCATCATCATCCTCTAGTAG-GCGCGTGCATGTATGCG 103
consensus_5251#2 GAGATTGACAACGATGCGTCGCAGTACATTCTCTACACGGATTAAACGTG-ACGTGTGGA 119
* ** * * * * * *** ** * * * **** * ** **
consensus_5251#0 TTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTT-TGGT 162
consensus_5251#1 TTTGATGCTAGCACGCAGCTACTTTCAGTTTGTGAAAAGGAGCGGGAGAGGGGTT-TGGT 162
consensus_5251#2 GAGGAACGGGCGGAAGAGAAGAGTGCACTTGAGCGGAGAGGGAGAGAGGGATGCTGTGGT 179
** ** * ** ** * * * * *** * * * ****
consensus_5251#0 TCATTATC-TATCCTCGGACAGTTTAA-GTGCTGTTTTTTTTGTGTGTGTGCAACTAATT 220
consensus_5251#1 TCATTATC-TATCCTCGGACAGTTTAACATGCTGTTTAAAT-GTGTGTGTGCAACTAATT 220
consensus_5251#2 GCACAGTCGCGTTTGTTGATGCACACGCACGTTTTGCCATTTAT-TGTGTTTGATAAGCG 238
** ** * ** * * * * * ***** * *
consensus_5251#0 CCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGT-TGTGGTT 279
consensus_5251#1 CCCCCTCCGCAGGAGTATAGAGTACAAGGAAATAGAGAGATGTGCATTTCGTATGTGGTT 280
consensus_5251#2 CTCGGCGCGCGCTAGGACATGCTAGAGAGAGAGAGAGAGAGAATACAGTCGAATTTGACC 298
* * *** ** * * ** * ** * ******* *** * **
consensus_5251#0 GGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGCC 339
consensus_5251#1 GGGGGCACTCTTGGGAAATCCCAGAACTATTTGCACGCTACGCGGATGCCTTTGACGGC- 339
consensus_5251#2 GAGGACACGCGAAAGAGATAGCAACAGTGGTAACA----AAACAATTGTGATAGAAGG-- 352
* ** *** * ** ** ** * * * ** * * ** * ** **
consensus_5251#0 GGCATCTTGGGGCAGGGGTAGGCAACAGAGAGCAAGCGAGCAGGAGCAAAGCGTGC-GAT 398
consensus_5251#1 GGCATCTTGGGGCAGGG-TAGGCACAAGAGAGCAAGCGAG-AGGAGCAAAGCGTGCCGAT 397
consensus_5251#2 -GTATTGAGGATCACAACCAGTAGCCAGT-AGCGAAGGAA-ACAAATAACGCCCCATGAT 409
* ** ** ** ** ** *** * ** * * ** ** ***
consensus_5251#0 ACAGTCATT--TNNTAGTGTGTCAACGGACTACANGTCTCTTTCTTTCNNNTCTCTCTAA 456
consensus_5251#1 ACAGTCATTCTNTNNAGTGTGTCAAGG----ATAAGTCTCTTTCTTTTATTT-------A 446
consensus_5251#2 -CGATCATTCACTCGAAGAGGATAACAAAAAAGCGGTTGCAAAATCCTTAAGCTTTCAAT 468
* ***** * * ** * ** * *
consensus_5251#0 CGCAATTCCAACGTTGTCCCTNGTACATACACA-ATCTTTATTCCTTACCAAACCTACCT 515
consensus_5251#1 AAGAATTCCAACTTT--CCCTTGTACATACACA-ATCTTTATTCCTTACCAAAC-TAACT 502
consensus_5251#2 GCGCATTGCGTTGCGCACACCAACACACGCACGCATCATCATCCTCTAGTAGGCGCGTGC 528
*** * * * *** *** *** * ** * ** * *
consensus_5251#0 ACCTAACTACCTACCTCC--CGCGCAACCATTT-GCGGGATAAANACGGAAACAGAACAA 572
consensus_5251#1 AACTAACTACCTAACTCC--CGGCAAACCATTTTGCGGGATAAAACGGCAAAAGAACCAA 560
consensus_5251#2 ATGTATGCGTTTGATGCTAGCACGCAGCCACTT-TCAGTTTGT----------------- 570
* ** * * * * *** ** * * *
consensus_5251#0 GGCAACAAACTAC-ACTAGGCCGTGTGCGTGCAGTAC-AGGTA-CGAGCACAAAT-GTCC 628
consensus_5251#1 GGCAACAAACTACCACTAGGC-GTGTGCGTGCAGTACCAGGTAACGAGCACAAATTGTCC 619
consensus_5251#2 ------------------------------------------------------------
consensus_5251#0 AC-AATATGCGCACTTTCGCCTTGTGCGTATGTGCGAGATTCATCCTAGGAGATCCAAAG 687
consensus_5251#1 ACCAATATGC-------------------------------------------------- 629
consensus_5251#2 ------------------------------------------------------------
consensus_5251#0 TAGCAGGTAGGCAGACAGGCAGGAGGTNTGCCTAGCACTGGAGTNCTCCATCGCGCCAGG 747
consensus_5251#1 ------------------------------------------------------------
consensus_5251#2 ------------------------------------------------------------
consensus_5251#0 CAAAGGGGGAAGAGAAAAAGCA 769
consensus_5251#1 ----------------------
consensus_5251#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||