cluster # 5260

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Anopheles gambiae
cluster # 5260 cluster # 5260 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5260#0 length = 818 sequences # 3

consensus_5260#1 length = 482 sequences # 1

consensusID : consensus_5260#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 818
fasta sequence

                              [CCGCAGGAAAAAGCGTACCCGCATCCCGACCTGTCCGAGGATTTCCTCAAAGCGGTACAGCGTCTCAACAACGACGAGCGAGAGGAAGAGTTCCAGGAGCGTCTGCAGCGACTGTGGAACAAGTACCAGCAGGAGGAGAACGAAATCGAGCAGCAACTGTTTGACGAGGAACCGTTAGGGCCGTACGAGAAGCGGCAAGGCTTCCCCATGTCCGAATCGGAACCCTCGCCCGCCCATTACGGTCCACCGATGCAGGAGCGCAAGCGAACGCTCCCAATCCTTCCCTGGCTGCCCGCTACGCGCAAGAAGCGCTTCCCGGTGGCAAAACGATCGCCCAAACCGGACGCAGCCCCAACCGGAACGGATGAAAAGGTGGCCAAAGATTTGCAGGCCCTCTTTGGAGCACCGATCGAGCCGAAGCGCAAACGATCGAGTGAACCGGCGAAGCCGGCTAGCTCTACGGCGAGCTCCAGCATGGCCACAACCTCCTCCACCACGACCGTGCGGCCAGCGGTGATGGAAGTTGCCAAAACGAAGCGCGATTCGAGCGATGAGCACCATGAACACAG-CTCGGAGGAAGGCCCGGATGATGATGAGCAT------GAG------CACGAGCACGAGCACGATCATGAGGACTCGAGCGAAGAGTTCGAGGGTGAGGATGACGACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGTGAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTCCATCCAGTGGAACAAGTACTTCGGTATGGATCGCAGGAAACAAGGATGGCCGGA]

[+] EMBL BM588349             [CCGCAGGAAAAAGCGTACCCGCATCCCGACCTGTCCGAGGATTTCCTCAAAGCGGTACAGCGTCTCAACAACGACGAGCGAGAGGAAGAGTTCCAGGAGCGTCTGCAGCGACTGTGGAACAAGTACCAGCAGGAGGAGAACGAAATCGAGCAGCAACTGTTTGACGAGGAACCATTAGGGCCGTACGAGAAGCGGCAAGGCTTCCCCATGTCCGAATCGGAACCCTCGCCCGCCCATTACGGTCCACCGATGCAGGAGCGCAAGCGAACGCTCCCAATCCTTCCCTGGCTGCCCGCTACGCGCAAGAAGCGCTTCCCGGTCGCAAAGCGATCGCCCAAACCGGACGCAGCCCCAACCGGAACGGATGAAAAGGTGGCCAAGGATTTGCAGGCCCTCTTTGGAGCACCGATCGAGCCGAAGCGCAAACGATCGAGTGAACCGGCGAAGCCGGCTAGCTCTACGGCGAGCTCCAGCATGGCCACAACCTCCTCCACCACGACCATGCGGCCAGCAGTGATGGAAGTTGCCAAGACGAAGCGCGATTCGAGCGATGAGCACCATGAACACAG CTCGGAGGAAGGTCCGGATGACGATGAGCAT      GAGCACGATCACGAGCACGAGCACGATCATGAGGACTCGAGCGAAGAGTTCGAGG                                                                                                                                                                         ]
[+] EMBL BM600609             [                                                                                                         ccGCGACTGTGGAACAAGTACCAGCAGGAGGAGAACGAAATCGAGCAGCAACTGTTTGACGAGGAACCGTTAGGGCCGTACGAGAAGCGGCAAGGCTTCCCCATGTCCGAATCGGAACCCTCGCCCGCCCATTACGGTCCACCGATGCAGGAGCGCAAGCGAACGCTCCCAATCCTTCCCTGGCTGCCCGCTACGCGCAAGAAGCGCTTCCCGGTGGCAAAACGATCGCCCAAACCGGACGCAGCCCCAACCGGAACGGATGAAAAGGTGGCCAAAGATTTGCAGGCCCTCTTTGGAGCACCGATCGAGCCGAAGCGCAAACGATCGAGTGAACCGGCGAAGCCGGCTAGCTCTACGGCGAGCTCCAGCATGGCCACAACCTCCTCCACCACGACCGTGCGGCCAGCGGTGATGGAAGTTGCCAAAACGAAGCGCGATTCGAGCGATGAGCACCATGAACACAGCCTCGGAGGAAGGCCCGGATGATGATGAGCATGAGCACGAG      CACGAGCACGAGCACGATCATGAGGACTCGAGCGAAGAGTTCGAGGGTGAGGATGACGACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGTGAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACG                                                              ]
[+] EMBL BM640689             [                                                                                                                                ccgGGAGGAGAACGAAATCGAGCAGCAACTGTTTGACGAGGAACCGTTAGGGCCGTACGAGAAGCGGCAAGGCTTCCCCATGTCCGAATCGGAACCCTCGCCCGCCCATTACGGTCCACCGATGCAGGAGCGCAAGCGAACGCTCCCAATCCTTCCCTGGCTGCCCGCTACGCGCAAGAAGCGCTTCCCGGTGGCAAAACGATCGCCCAAACCGGACGCAGCCCCAACCGGAACGGATGAAAAGGTGGCCAAAGATTTGCAGGCCCTCTTTGGAGCACCGATCGAGCCGAAGCGCAAACGATCGAGTGAACCGGCGAAGCCGGCTAGCTCTACGGCGAGCTCCAGCATGGCCACAACCTCCTCCACCACGACCGTGCGGCCAGCGGTGATGGAAGTTGCCAAAACGAAGCGCGATTCGAGCGATGAGCACCATGAACACAG CTCGGAGGAAGGCCCGGATGATGATGAGCAT      GAG      CACGAGCACGAGCACGATCATGAGGACTCGAGCGAAGAGTTCGAGGGTGAGGATGACGACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGTGAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTCCATCCAGTGGAACAAGTACTTCGGTATGGATCGCAGGAAACAAGGATGGCCGGA]




>consensus_5260#0
CCGCAGGAAAAAGCGTACCCGCATCCCGACCTGTCCGAGGATTTCCTCAAAGCGGTACAG
CGTCTCAACAACGACGAGCGAGAGGAAGAGTTCCAGGAGCGTCTGCAGCGACTGTGGAAC
AAGTACCAGCAGGAGGAGAACGAAATCGAGCAGCAACTGTTTGACGAGGAACCGTTAGGG
CCGTACGAGAAGCGGCAAGGCTTCCCCATGTCCGAATCGGAACCCTCGCCCGCCCATTAC
GGTCCACCGATGCAGGAGCGCAAGCGAACGCTCCCAATCCTTCCCTGGCTGCCCGCTACG
CGCAAGAAGCGCTTCCCGGTGGCAAAACGATCGCCCAAACCGGACGCAGCCCCAACCGGA
ACGGATGAAAAGGTGGCCAAAGATTTGCAGGCCCTCTTTGGAGCACCGATCGAGCCGAAG
CGCAAACGATCGAGTGAACCGGCGAAGCCGGCTAGCTCTACGGCGAGCTCCAGCATGGCC
ACAACCTCCTCCACCACGACCGTGCGGCCAGCGGTGATGGAAGTTGCCAAAACGAAGCGC
GATTCGAGCGATGAGCACCATGAACACAGCTCGGAGGAAGGCCCGGATGATGATGAGCAT
GAGCACGAGCACGAGCACGATCATGAGGACTCGAGCGAAGAGTTCGAGGGTGAGGATGAC
GACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGTGAAGGAGGAT
CAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTCCATCCAGTGGAACAAG
TACTTCGGTATGGATCGCAGGAAACAAGGATGGCCGGA

consensusID : consensus_5260#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [AGATCGGCCCGAGGTGAACACGAGCACGAGCACGATCATGAGGACTCGAGCGATNGAGTTCGAGGGTGAGGATGACGACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGTGAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTCCATCCAGTGGAACAAGTACTTCGGTATGGATCGCAGGAAAAAGGATGGCCGGAATGGTCCGGCGGCCGTTGCCGGTGCCGCTGCCGGTGCTGCCGTGCCGTATCCGCTGAGCTTTTACAAAACGTACGATGAGGATCGGAAGAAGAAAAACGTCAACCAGGGCAAGCTGGAGAGCATGGCGCAGAAGCTGAAAAACATCGAGGATCTTATTCTGGACCAGANCGTCAAGTATGCGGGCGATCATGAAGGAACCATCACTGAGCCGGCTGAGCTGGAGGAGCTGAAGGACAAACTGCTGGACC]

[+] EMBL AL697044             [AGATCGGCCCGAGGTGAACACGAGCACGAGCACGATCATGAGGACTCGAGCGATNGAGTTCGAGGGTGAGGATGACGACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGTGAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTCCATCCAGTGGAACAAGTACTTCGGTATGGATCGCAGGAAAAAGGATGGCCGGAATGGTCCGGCGGCCGTTGCCGGTGCCGCTGCCGGTGCTGCCGTGCCGTATCCGCTGAGCTTTTACAAAACGTACGATGAGGATCGGAAGAAGAAAAACGTCAACCAGGGCAAGCTGGAGAGCATGGCGCAGAAGCTGAAAAACATCGAGGATCTTATTCTGGACCAGANCGTCAAGTATGCGGGCGATCATGAAGGAACCATCACTGAGCCGGCTGAGCTGGAGGAGCTGAAGGACAAACTGCTGGACC]




>consensus_5260#1
AGATCGGCCCGAGGTGAACACGAGCACGAGCACGATCATGAGGACTCGAGCGATNGAGTT
CGAGGGTGAGGATGACGACAAGAAGAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGA
GGTGGTGAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTC
CATCCAGTGGAACAAGTACTTCGGTATGGATCGCAGGAAAAAGGATGGCCGGAATGGTCC
GGCGGCCGTTGCCGGTGCCGCTGCCGGTGCTGCCGTGCCGTATCCGCTGAGCTTTTACAA
AACGTACGATGAGGATCGGAAGAAGAAAAACGTCAACCAGGGCAAGCTGGAGAGCATGGC
GCAGAAGCTGAAAAACATCGAGGATCTTATTCTGGACCAGANCGTCAAGTATGCGGGCGA
TCATGAAGGAACCATCACTGAGCCGGCTGAGCTGGAGGAGCTGAAGGACAAACTGCTGGA
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5260#0      CCGCAGGAAAAAGCGTACCCGCATCCCGACCTGTCCGAGGATTTCCTCAAAGCGGTACAG 60
consensus_5260#1      ------------------------------------------------------------
                                                                                  

consensus_5260#0      CGTCTCAACAACGACGAGCGAGAGGAAGAGTTCCAGGAGCGTCTGCAGCGACTGTGGAAC 120
consensus_5260#1      ------------------------------------------------------------
                                                                                  

consensus_5260#0      AAGTACCAGCAGGAGGAGAACGAAATCGAGCAGCAACTGTTTGACGAGGAACCGTTAGGG 180
consensus_5260#1      ------------------------------------------------------------
                                                                                  

consensus_5260#0      CCGTACGAGAAGCGGCAAGGCTTCCCCATGTCCGAATCGGAACCCTCGCCCGCCCATTAC 240
consensus_5260#1      -------------------------------------------------------AGATC 5
                                                                             *   *

consensus_5260#0      GGTCCACCGATGCAGGAGCGCAAGCGAACGCTCCCAATCCTTCCCTGGCTGCCCGCTACG 300
consensus_5260#1      GGCCCGA-GGTGAACACGAGCACGAGCACGATCATGAGGACTCGAGCGATNGAGTTCGAG 64
                      ** **   * ** *   * *** * * *** **   *    **    * *         *

consensus_5260#0      CGCAAGAAGCGCTTCCCGGTGGCAAAACGATCGCCCAAACCGGACGCAGCCCCAACCGGA 360
consensus_5260#1      GGTGAGGATGACGACAAGAAGAAGAAGCGATCG----GTGCGCAAGCGGTCCAATCTGGA 120
                       *  ** *   *  *  *  *   ** ******       ** * ** * ** * * ***

consensus_5260#0      ACGGATGAAAAGGTGGCCAAAGATTTGCAGGCCCTCTTTGGAGCACCGATCGAGCCGAAG 420
consensus_5260#1      GGTGGTGA--AGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGT---TTAAGACGAAA 175
                         * ***  *** **   **  * ***  * *    **** *      *  ** **** 

consensus_5260#0      CGCAAACGATCGAGTGAACCGGCGAAGCCGGCTAGCTCTACGGCGAGCTCCAGCATGGCC 480
consensus_5260#1      A--AGTCCATCCAGTGGAACAAGTACTTCGGTATGGATCGCAGGAAAA---AGGATGGCC 230
                         *  * *** **** * *    *   ***   *     * *  *     ** ******

consensus_5260#0      ACAACCTCCT--CCACCACGACCG-TGCGGCCAGCGGTGATGGAAGTTGCCAAAACGAAG 537
consensus_5260#1      GGAATGGTCCGGCGGCCGTTGCCGGTGCCGCTGCCGGTGCTGCCG--TGCCGTATCC--G 286
                        **    *   *  **    *** *** **   ***** **     ****  * *   *

consensus_5260#0      CGCGATTCGAGCGATGAGCACCATGAACACAGCTCGGAGGAAGGCCCGGATGATGATGAG 597
consensus_5260#1      CTGAGCTTTTACAAAACGTACGATGAGGATCGGAAGAAGAAAAACGTCAACCAGGGCAAG 346
                      *     *    * *   * ** ****  *  *   * ** **  *    *  * *   **

consensus_5260#0      C--ATGAGCACGA-GCACGAGC--ACGATCAT-GAGGACTCGAGCGAAGAGTTCGAGGGT 651
consensus_5260#1      CTGGAGAGCATGGCGCAGAAGCTGAAAAACATCGAGGATCTTATTCTGGACCAGANCGTC 406
                      *    ***** *  ***  ***  *  * *** *****    *     **       *  

consensus_5260#0      GAGGATGACGACAAGAA-GAAGAAGCGATCGGTGCGCAAGCGGTCCAATCTGGAGGTGGT 710
consensus_5260#1      AAGTATGCGGGCGATCATGAAGGAACCATCACTG----AGCCGGCTGAGCTGGAGGAGCT 462
                       ** ***  * * *  * **** * * ***  **    *** * *  * ******* * *

consensus_5260#0      GAAGGAGGATCAAATTCTGCCCGGCGATATTGGCGAGTTTAAGACGAAAAAGTCCATCCA 770
consensus_5260#1      GAAGGA----CAAA--CTGCTGGACC---------------------------------- 482
                      ******    ****  ****  * *                                   

consensus_5260#0      GTGGAACAAGTACTTCGGTATGGATCGCAGGAAACAAGGATGGCCGGA 818
consensus_5260#1      ------------------------------------------------