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Anopheles gambiae
cluster # 5261 cluster # 5261       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5261#0 length = 726 sequences # 2  
consensus_5261#1 length = 612 sequences # 1  
consensus_5261#2 length = 608 sequences # 1  

consensusID : consensus_5261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 726
fasta sequence
                              [AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGA--TGTGTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTT-AAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGANAAGTCTTTGAACTTATGAAGCAAAATTACCTA]

[+] EMBL AL697056             [AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGA  TGTGTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTT AAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGAN                                ]
[+] EMBL BX611463             [                                                                                               CGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCA GGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAA AAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGAT AAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAA TTATCGAG  AA TTATAATAGA A ATTT  GAA A TT GAAA CAAAGGC AAAA CATGCAAAC AAAACCACCA ATATATTAA CACG  AATTGTAATTTGCGATAACTACACAACCCACGTA CACATGAACGCGT  ACACAGCGGAAGAAGTCTTTGAACTTATGAAGCAAAATTACCTA]


>consensus_5261#0 AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGT GCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGT GTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAG CGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGG GCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTT TTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTG CAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTAT TATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTTAAAAAAAG CGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTAT CGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGC GAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGC CACGTACCACATGAACGCGTACACACAGCGGGANAAGTCTTTGAACTTATGAAGCAAAAT TACCTA



consensusID : consensus_5261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAACGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAAC]

[+] EMBL BM579721             [CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAACGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAAC]


>consensus_5261#1 CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAA CGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA GTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGT CCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAA CACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATT AAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTA GTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAAC TCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATG TCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCG ATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACG AAGTAAACGAAC



consensusID : consensus_5261#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGCAAAACATG]

[+] EMBL AL930809             [CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGCAAAACATG]


>consensus_5261#2 CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA GTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGT CCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACA CCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAA GCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGT GACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTC AAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTC AAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGAT AAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAG TAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGC AAAACATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5261#0      ------------------------------------------------------------
consensus_5261#2      ------------------------------------------------------------
consensus_5261#1      CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAA 60
                                                                                  

consensus_5261#0      ------------------AGATCGCCNGAG---GTNAAAGTCATTAC--CATAAACAACA 37
consensus_5261#2      CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA 60
consensus_5261#1      CGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA 120
                                        ****      **      ***********  * *********

consensus_5261#0      GCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCG 97
consensus_5261#2      G-TATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCG 119
consensus_5261#1      G-TATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCG 179
                      * ******************************************************* **

consensus_5261#0      TCCCAGCAAAGTATGTATGATGTGTGTGTGTGT--TGAACAAAAGATCGGTGTTAATCCA 155
consensus_5261#2      TCCCAGCAAAGTATGTATGATGTGTGTGTGTGT--TAAACAAAAGATCGGTGTTAATCCA 177
consensus_5261#1      TCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCA 239
                      *********************************  * ***********************

consensus_5261#0      ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAAT 215
consensus_5261#2      ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAAT 237
consensus_5261#1      ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAAT 299
                      ***************************************** ******************

consensus_5261#0      TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACG 275
consensus_5261#2      TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGG-AGCGCTCTCCCTGGACGATACG 296
consensus_5261#1      TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGG-AGCGCTCTCCCTGGACGATATG 358
                      ************************************* ******************** *

consensus_5261#0      TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 335
consensus_5261#2      TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 356
consensus_5261#1      TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 418
                      ************************************************************

consensus_5261#0      ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAA 395
consensus_5261#2      ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAA 416
consensus_5261#1      ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAA 478
                      *********************************** ************************

consensus_5261#0      TGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 455
consensus_5261#2      TGTCAAACAAAAAG-AGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 475
consensus_5261#1      TGTCAAACAAAAAG-AGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 537
                      *********** ** *********************************************

consensus_5261#0      GCGATCAAAAACCATTTAAAAAAA-GCGGTAGGATAAATTGAATTACATATAAACACAAG 514
consensus_5261#2      GCGAT-AAAAACCATTTAAAAAAA-GCGGTAGGATAAATTGAATTACATATAAACACAAG 533
consensus_5261#1      GCGAT-AAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAG 596
                      ***** ****************** ***********************************

consensus_5261#0      CACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACAC 574
consensus_5261#2      CACGAAGTAAACGAACTCTAA-TTATCGANAA---TTATAATAGAAA--CTTTCGCNNAC 587
consensus_5261#1      CACGAAGTAAACGAAC-------------------------------------------- 612
                      ****************                                            

consensus_5261#0      TTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAA 634
consensus_5261#2      TTGAAA--CAAAGGCAAAA--CATG----------------------------------- 608
consensus_5261#1      ------------------------------------------------------------
                                                                                  

consensus_5261#0      TTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGAN 694
consensus_5261#2      ------------------------------------------------------------
consensus_5261#1      ------------------------------------------------------------
                                                                                  

consensus_5261#0      AAGTCTTTGAACTTATGAAGCAAAATTACCTA 726
consensus_5261#2      --------------------------------
consensus_5261#1      --------------------------------
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)