These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1340 fasta sequence [TTTAGGGAGCACCGGGANCACCGGGGGGTTGTGAGAGGAGTTGTTTTTTGGAGGTTTCTTTGGATACGATACGGTGTACGGTCGATGGCTACTGTGCTTCGTCACATTGGCACGTTTGGTTTTATTTGCAGTTGACGGCGTTATGGCATCGTAGTTGTCTGGGAAGGTGAAACAGCCTACTTTGTTGAGGTTTTCATTATCTTCGATCCGATAAGGCAGTTGGTGCGATAGGGCGGTATATATTAATTGCAACCAAATGCACTGTTTTAGCTGATAAGAGTGCGCCTGACTGATGCGAAGGAGTCTATTCGTTGGGGTGCATACACAACCCTGTATCTTAATCCCGCGTCGCTATTGCCTTCGAAATACAAATCCAATTCTTTGTATGTTTGAGATGATTCAGCATCATCTGAACGCTTGCTTGACAAAACTGCACACACTTCCTTGACTATCTAACAAGGAACTGGTCTCCGTCATTTCCCTCTATGAGGAAGACTTTCNTGTTTACATTTCCTTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATACCCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTACCGCCAGCAGGCCCAGCACCAGGATTGCACGACATTGGCGGCACACGTTTGTTCTCCGGGTTTGTTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACCCTCCAACCGTTGCTGGATCACTTTATCTCGATCTCGGTGTATCAATTTTTCTCCTCTCCACAAACGCCATACAAAAACGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGCGTGTAAATTTTTTCGCGGCTTTTTCCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCGCGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACAGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTACTACTGCTGCTAGCACTGATTACCACCGCCGTCCATGCTAGAACCCCACGCGTCCGCCCACGCGTCCGCGG] [+] EMBL BX626460 [TTTAGGGAGCACCGGGANCACCGGGGGGTTGTGAGAGGAGTTGTTTTTTGGAGGTTTCTTTGGATACGATACGGTGTACGGTCGATGGCTACTGTGCTTCGTCACATTGGCACGTTTGGTTTTATTTGCAGTTGACGGCGTTATGGCATCGTAGTTGTCTGGGAAGGTGAAACAGCCTACTTTGTTGAGGTTTTCATTATCTTCGATCCGATAAGGCAGTTGGTGCGATAGGGCGGTATATATTAATTGCAACCAAATGCACTGTTTTAGCTGATAAGAGTGCGCCTGACTGATGCGAAGGAGTCTATTCGTTGGGGTGCATACACAACCCTGTATCTTAATCCCGCGTCGCTATTGCCTTCGAAATACAAATCCAATTCTTTGTATGTTTGAGATGATTCAGCATCATCTGAACGCTTGCTTGACAAAACTGCACACACTTCCTTGACTATCTAACAAGGAACTGGTCTCCGTCATTTCCCTCTATGAGGAAGACTTTCNTGTTTACATTTCCTTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGAT ] [-] EMBL BM642743 [ CTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATACCCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTACCGCCAGCAGGCCCAGCACCAGGATTGCACGACATTGGCGGCACACGTTTGTTCTCCGGGTTTGTTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACCCTCCAACCGTTGCTGGATCACTTTATCTCGATCTCGGTGTATCAATTTTTCTCCTCTCCACAAACGCCATACAAAAACGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGCGTGTAAATTTTTTCGCGGCTTTTTCCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCGCGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACAGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTACTACTGCTGCTAGCACTGATTACCACCGCCGTCCATGCTAGAACCCCACGCGTCCGCCCACGCGTCCGCGG] consensusID : consensus_5292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TTTTTTAGCGACTTTGACGTTGTAAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACGCTCCAACCGTTGCTGGAACACTTTATCTCGATCTCGTTGTATCAATTTTTCTCCTCTCCACAAGCGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGTGTGTAAATTTTTTCGCGGCTTTTTTCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCACGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACGGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTGCTGCTGCTGCTAGCACTGATTACCACCGCGG] [-] EMBL BM642170 [TTTTTTAGCGACTTTGACGTTGTAAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACGCTCCAACCGTTGCTGGAACACTTTATCTCGATCTCGTTGTATCAATTTTTCTCCTCTCCACAAGCGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGTGTGTAAATTTTTTCGCGGCTTTTTTCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCACGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACGGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTGCTGCTGCTGCTAGCACTGATTACCACCGCGG] consensusID : consensus_5292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CACGAGGAAGACTTTCTTGTTTACATTTCCCTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATAACCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTGCCGCCAGCAGGCCCAGCACCAGGGTTGCACGACATTGGCGGCACACGTTTGTTCCTCGGGTTTGTTGTTTGTTTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCCGG] [-] EMBL BM637726 [CACGAGGAAGACTTTCTTGTTTACATTTCCCTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATAACCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTGCCGCCAGCAGGCCCAGCACCAGGGTTGCACGACATTGGCGGCACACGTTTGTTCCTCGGGTTTGTTGTTTGTTTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5292#0 TTTAGGGAGCACCGGGANCACCGGGGGGTTGTGAGAGGAGTTGTTTTTTGGAGGTTTCTT 60 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TGGATACGATACGGTGTACGGTCGATGGCTACTGTGCTTCGTCACATTGGCACGTTTGGT 120 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TTTATTTGCAGTTGACGGCGTTATGGCATCGTAGTTGTCTGGGAAGGTGAAACAGCCTAC 180 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TTTGTTGAGGTTTTCATTATCTTCGATCCGATAAGGCAGTTGGTGCGATAGGGCGGTATA 240 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TATTAATTGCAACCAAATGCACTGTTTTAGCTGATAAGAGTGCGCCTGACTGATGCGAAG 300 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 GAGTCTATTCGTTGGGGTGCATACACAACCCTGTATCTTAATCCCGCGTCGCTATTGCCT 360 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TCGAAATACAAATCCAATTCTTTGTATGTTTGAGATGATTCAGCATCATCTGAACGCTTG 420 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 CTTGACAAAACTGCACACACTTCCTTGACTATCTAACAAGGAACTGGTCTCCGTCATTTC 480 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ---------------------------------TTTTTTAGCGACTTTGACGTTGTAAAT 27 consensus_5292#0 CCTCTATGAGGAAGACTTTCNTGTTTACATTTCCTTGCTCTCCAGCCGTCCA-TTAAACT 539 consensus_5292#2 ----CACGAGGAAGACTTTCTTGTTTACATTTCCCTGCTCTCCAGCCGTCCA-TTAAACT 55 consensus_5292#1 TCTCAACGATCAGTGCAGCAGTTTGTAAAACGCTCCAACCGTTGCTGGAACACTTTATCT 87 * ** * * * * ** * * * * ** ** * ** consensus_5292#0 CGCCCGCGTGACATC--TTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCA 597 consensus_5292#2 CGCCCGCGTGACATC--TTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCA 113 consensus_5292#1 CGATCTCGTTGTATCAATTTTTCTCCTCTCCACAAGCGCACACACGCAACGGGTT-TTTA 146 ** * *** *** ** * * ** * * * *** * * * * consensus_5292#0 CAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACG-CGACAAATCGTAT 656 consensus_5292#2 CAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGGCGACAAATCGTAT 173 consensus_5292#1 AAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAATCACTGCCA-CTTGAAATCACCT 205 ** * * * ** * * ** * ** * * ***** * consensus_5292#0 GCCTCACTGGCGTATGCCA--GCTTCGTTCAGCCGGAGAGTGATACCCTCAGCGAAGGCG 714 consensus_5292#2 GCCTCACTGGCGTATGCCA--GCTTCGTTCAGCCGGAGAGTGATAACCTCAGCGAAGGCG 231 consensus_5292#1 ATTTTGTGTGTAAATTTTTTCGCGGCTTTTTTCCGGCCCACTGCCACTTTCGCACACGCC 265 * * ** ** * ** **** * * ** * ** consensus_5292#0 AAGAAGA--GGCGCTT-TGGCATGGTTGTCGTAC-CG--CCAGCAGGCCCAGCACC-AGG 767 consensus_5292#2 AAGAAGA--GGCGCTT-TGGCATGGTTGTCGTGC-CG--CCAGCAGGCCCAGCACC-AGG 284 consensus_5292#1 ACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCACGCAGTTCGACACCGAGG 325 * ** * ** *** * * * ** ** * * **** *** consensus_5292#0 ATTGCA---CGACATTG---GCGGCACACGTTTGTTCTCCGGGTTTGTTGTTTGTTTGTG 821 consensus_5292#2 GTTGCA---CGACATTG---GCGGCACACGTTTGTTCCTCGGGTTTGTTGTTTGTTTGTG 338 consensus_5292#1 ACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACGGCAAGCAGTTGCTGCTGG 385 **** ** * * ** *** * ** ** * *** * * consensus_5292#0 TGTGTGTGTGTGTGTGTGCGTTTTTTGCGACT-TTGACGTTGTCAATTCTCAACGATCAG 880 consensus_5292#2 TG--------------TGCGTTTTTTGCGACT-TTGACGTTGTCAATTCTCAACGATCCG 383 consensus_5292#1 TCTTTAAAAATGCTTCCACTACTACTACTGCTGCTGCTGCTAGCACTGATTACCACCGCG 445 * * * * * ** ** * * ** * * * * * consensus_5292#0 TGCAGCAGTTTGTAAAACCCTCCAACCGTTGCTGGATCACTTTATCTCGATCTCGGTGTA 940 consensus_5292#2 G----------------------------------------------------------- 384 consensus_5292#1 G----------------------------------------------------------- 446 consensus_5292#0 TCAATTTTTCTCCTCTCCACAAACGCCATACAAAAACGCACACACGCAACGGGTTTTTAA 1000 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 AGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAAATCACTGCCACTTGAAATCACCTA 1060 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TTTTGCGTGTAAATTTTTTCGCGGCTTTTTCCCGGCCCACTGCCACTTTCGCACACGCCA 1120 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 CACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCGCGCAGTTCGACACCGAGGA 1180 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 CTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACAGCAAGCAGTTGCTGCTGGT 1240 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 CTTTAAAAATGCTTCCACTACTACTACTACTACTGCTGCTAGCACTGATTACCACCGCCG 1300 consensus_5292#2 ------------------------------------------------------------ consensus_5292#1 ------------------------------------------------------------ consensus_5292#0 TCCATGCTAGAACCCCACGCGTCCGCCCACGCGTCCGCGG 1340 consensus_5292#2 ---------------------------------------- consensus_5292#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||