cluster # 5298

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Anopheles gambiae
cluster # 5298 cluster # 5298 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5298#0 length = 694 sequences # 3

consensus_5298#1 length = 559 sequences # 1

consensusID : consensus_5298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 694
fasta sequence

                              [CCGTGTACTCTCTCTGTGCAAAACATTCGAACCGCTTAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGC-CGT-GA-TTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCGGGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGTACATCCCCGGCATGGACTGGCAGGAGCCGATCAT]

[+] EMBL BM576106             [CCGTGTACTCTCTCTGTGCAAAACATTCGAACCGCTTAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCGACGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAATTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGCGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGC CGT GA TTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCGGGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGTACATCCCC                          ]
[+] EMBL BX628322             [                    AAACATTCGAACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGTCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCACGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGCNCGTNGA TTTGGGTCGATGCACATGCGGACCTAAACACCAACTCAACCTCCCCGTCCGGGAACATTCACGGTATGC                                                                            ]
[+] EMBL BM599636             [                                                      ccgATACAATGTTGCCACGGATAGCTTTGGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTCAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAAGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGC CGT AATTTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCGGGAACATTCACGGCATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGACTACTGGCCGTACATCCCCGGCATGGACTGGCAGGAGCCGATCAT]




>consensus_5298#0
CCGTGTACTCTCTCTGTGCAAAACATTCGAACCGCTTAGTCGCGCAGTGCAGTTACAATA
CAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAG
CGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGA
AAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCA
AGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCC
AGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCA
ACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCA
GGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCG
GCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATG
TGGCCGTGATTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCG
GGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGT
ACATCCCCGGCATGGACTGGCAGGAGCCGATCAT

consensusID : consensus_5298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGAACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGGCTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTCCACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGTCCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGCTTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCCGTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGAACTTATCGACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACGGCGGAGATCACGCGATCGCG]

[+] EMBL AL930093             [GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGAACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGGCTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTCCACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGTCCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGCTTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCCGTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGAACTTATCGACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACGGCGGAGATCACGCGATCGCG]




>consensus_5298#1
GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGA
ACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGG
CTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTC
CACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATT
GGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGT
CCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGC
TTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCC
GTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGA
ACTTATCGACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACGG
CGGAGATCACGCGATCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5298#0      -----------------------------CCGT-GTACTCTCTCTGTGCAAAACATTCGA 30
consensus_5298#1      GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGA 60
                                                   * ** **************************

consensus_5298#0      ACCGCTTAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCT-TTAGCGAGG 89
consensus_5298#1      ACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGG 120
                      ****** ******************************************* *********

consensus_5298#0      CTGGTAG-GCCGCACCGGTGT-CACGT-TTGGA-GCGTCAACCAGCAGCTACTGCACCTC 145
consensus_5298#1      CTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTC 180
                      ******* ************* ***** ***** **************************

consensus_5298#0      CACGG--CCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATT 203
consensus_5298#1      CACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATT 240
                      *** *  *****************************************************

consensus_5298#0      GGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGT-GTCGGTTTGGGG-- 260
consensus_5298#1      GGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGT 300
                      ********************************************* *******   **  

consensus_5298#0      CCCAAA-GCGATCCGTGAAGCTGGCCTGA-TCGACCACATCCAGGAGATATCGCCCAAGC 318
consensus_5298#1      CCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGC 360
                      ****** ********************** **** ** **********************

consensus_5298#0      T-GAACATTAAAGATTACGGTG---ACATCCAGTATGAA-GCGCTCAACTTCCAGGG-CC 372
consensus_5298#1      TTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCC 420
                      * **************** ***   ************** ******** ******** **

consensus_5298#0      GTAAGGTG---GGCAAC-ATGAAGAAGCT-GGAGCACGTGGCCAGCT--GTAGCAGG--A 423
consensus_5298#1      GTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGA 480
                      **** * *   * **** *********** ***************    ****** *  *

consensus_5298#0      ACTTATCGCACCAGGTGACGGAGGTGCTGGATGACG-ATCGGTTGTGCATAAC-GCT-CG 480
consensus_5298#1      ACTTATCG-ACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACG 539
                      ******** *************************** ***** ********** *** **

consensus_5298#0      GCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATG 540
consensus_5298#1      GCGGAGATCACGCGATCGCG---------------------------------------- 559
                      ********** *********                                        

consensus_5298#0      TGGCCGTGATTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCG 600
consensus_5298#1      ------------------------------------------------------------
                                                                                  

consensus_5298#0      GGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGT 660
consensus_5298#1      ------------------------------------------------------------
                                                                                  

consensus_5298#0      ACATCCCCGGCATGGACTGGCAGGAGCCGATCAT 694
consensus_5298#1      ----------------------------------