These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence [GAATCGCCCGAGGTATCATCGAGGGCGGGTGGTTGCGCACGGGCGACATCGCGCACTACGACGAGCAGCTGCAGTTCTACATCACCGACCGGCTGAAGGAGCTGATCAAGGTGAAGGGCTTCCAGGTGCCGCCGGCCGAGCTGGAGTGAGCTGCTGCGATCGCACGAAGCTGGTGTGCCTGATGCCTGCGGTCGTCTGGCATGCCGCACCCTGGTGGCTGGGCGAGGTGCCGCGAGCCTTCNGTCGTACCTGAAGTGCGGGCTGCGCTGCTGTCTCCGAGGACGCACTGAATGGCGTTCATCGCGGAGAAGGTGGCCGTGTACAAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCG-ATCACACGATATTACCCTTGCGCTAGGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTAGTTTTTGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAACAGGANNCATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCACAGACCGTATTAGCGCGACCCCCCTTTGGGAAAATGGTCGCCAACGACCGTAGTGTGTGTGAAGGGCTCGGTTTTAGCGCGGCTCATTCCCCATTTTGTGGGGCGGCTTAGTGGTGGTTTTCTGTGGTACTGTATGTTATGTTTTTGTTTTTAATAGGAGGACGTGTTACTTTAGCTTTAGCCCGCCCTTTCCGCCTTTCTCCTCGAGCCCAGTGAGCACAAAGCATTAAGTACATGTTAAAACGTAAGCGTAAAAATAGACCATTTTGTATCCTTAAAAAGTGTAACCTGTCTATATAAATGCTCAGTGCTGCAAAATGTCACTGTCAATGTCGTAAAAAAAACTGACTAAAACAAAATCCATATCAGCGTCACGTACTCAATTGTCAAAAATCAGAGGTGATACTCAAAACGGTTGGTGTGACCAGTACATGCTTCAAGACATTGTGTGCGAACATCGCTTGGTCATTCACTATGTCATGACTTTTTTTTACTGATGATCAGTGATCAGTTTTGCNAAATGTCACTGACATAGCCATGAC] [+] EMBL AL930170 [GAATCGCCCGAGGTATCATCGAGGGCGGGTGGTTGCGCACGGGCGACATCGCGCACTACGACGAGCAGCTGCAGTTCTACATCACCGACCGGCTGAAGGAGCTGATCAAGGTGAAGGGCTTCCAGGTGCCGCCGGCCGAGCTGGAGTGAGCTGCTGCGATCGCACGAAGCTGGTGTGCCTGATGCCTGCGGTCGTCTGGCATGCCGCACCCTGGTGGCTGGGCGAGGTGCCGCGAGCCTTCNGTCGTACCTGAAGTGCGGGCTGCGCTGCTGTCTCCGAGGACGCACTGAATGGCGTTCATCGCGGAGAAGGTGGCCGTGTACAAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCG ATCACACGATATTACCCTTGCGCTAGGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTAGTTTTTGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAACAGGANNCATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGA ] [+] EMBL BX621790 [ GGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTAGGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTT GTTTTTGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAA AGGA GATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCACAGACCGTATTAGCGCGACCCCCCTTTGGGAAAATGGTCGCCAACGACCGTAGTGTGTGTGAAGGGCTCGGTTTTAGCGCGGCTCATTCCCCATTTTGTGGGGCGGCTTAGTGGTGGTTTTCTGTGGTACTGTATGTTATGTTTTTGTTTTTAATAGGAGGACGTGTTACTTTAGCTTTAGCCCGCCCTTTCCGCCTTTCTCCTCGAGCCCAGTGAGCACAAAGCATTAAGTACATGTTAAAACGTAAGCGTAAAAATAGACCATTTTGTATCCTTAAAAAGTGTAACCTGTCTATATAAATGCTCAGTGCTGCAAAATGTCACTGTCAATGTCGTAAAAAAAACTGACTAAAACAAAATCCATATCAGCGTCACGTACTCAATTGTCAAAAATCAGAGGTGATACTCAAAACGGTTGGTGTGACCAGTACATGCTTCAAGACATTGTGTGCGAACATCGCTTGGTCATTCACTATGTCATGACTTTTTTTTACTGATGATCAGTGATCAGTTTTGCNAAATGTCACTGACATAGCCATGAC] consensusID : consensus_5306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTATGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTGTTTTTGGGCAGGGCAATGTGAAGCGAGGGATAGGAGAGCGAGAGGAGGTTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCTGACGCACCTGAACATTGTCTCCAACAGTGAGATGCTGGCGGTAAAGGCAGGCAACGAGCACGGTGGTGCTGCCCACCACCGACACCTTCCAGGACGTGCTGCCGTGCGTGCTGCCCTTCTTCCACATCTACGGCCTCACGGTGACGATGATCTCAAAGCTGCGGCAGGGCTGCAAGCTGGTCACGCTGCCCAACTTCAAACCCGACACGTTCCTGAACGCGCTCGCCGAACACAAGGGCACGGTGCTGCATCTCGTCCCACCCATAATTATTTTCCTCGGCCATCACGACGGCGTCAAGCCACGGCACACCGACTCCATCCGGAACGTGTTCTCGGGCGCGGCGCCGATGGGCAACGCCCGACGCCGAACGCTTTACCGCA] [+] EMBL BM620733 [CCGAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCTCGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTATGTTGAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTGTTTTTGGGCAGGGCAATGTGAAGCGAGGGATAGGAGAGCGAGAGGAGGTTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCTGACGCACCTGAACATTGTCTCCAACAGTGAGATGCTGGCGGTAAAGGCAGGCAACGAGCACGGTGGTGCTGCCCACCACCGACACCTTCCAGGACGTGCTGCCGTGCGTGCTGCCCTTCTTCCACATCTACGGCCTCACGGTGACGATGATCTCAAAGCTGCGGCAGGGCTGCAAGCTGGTCACGCTGCCCAACTTCAAACCCGACACGTTCCTGAACGCGCTCGCCGAACACAAGGGCACGGTGCTGCATCTCGTCCCACCCATAATTATTTTCCTCGGCCATCACGACGGCGTCAAGCCACGGCACACCGACTCCATCCGGAACGTGTTCTCGGGCGCGGCGCCGATGGGCAACGCCCGACGCCGAACGCTTTACCGCA] consensusID : consensus_5306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [GCCTGNAGCAGAATCGGCACGAGGANNACACGGCCCTGGGGCCGAACCACCTCCGGCGAAGCTGCTCGTCCGGGGGCCGCAGGTCATGAAGGGCTACCACAACAACCGCAAGGCGACGGACGAGATGAGTCATCGAGGGCGGGTGGTTGCGCACGGGCGTACATCGCGCACTACGACGAGCAGCTGCAGGTTCTACATCACCGACCGGCTGAANGAGCTGATCAAGGCTGAAGGGCCTTCCAGGGGTGCCGACGGACNCGAG] [+] EMBL BX469363 [GCCTGNAGCAGAATCGGCACGAGGANNACACGGCCCTGGGGCCGAACCACCTCCGGCGAAGCTGCTCGTCCGGGGGCCGCAGGTCATGAAGGGCTACCACAACAACCGCAAGGCGACGGACGAGATGAGTCATCGAGGGCGGGTGGTTGCGCACGGGCGTACATCGCGCACTACGACGAGCAGCTGCAGGTTCTACATCACCGACCGGCTGAANGAGCTGATCAAGGCTGAAGGGCCTTCCAGGGGTGCCGACGGACNCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5306#0 GAATCGCCCGAGGTATCATCGAGGGCGGGTGGTTGCGCACGGGCGACATCGCGCACTACG 60 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------CCGAGCGGCTCGAGGGTGGCGTCACCTTTCTGGACA 36 consensus_5306#0 ACGAGCAGCTGCAGTTCTACATCACCGACCGGCTGAAGGAGC---TGATCAAGGTGAAGG 117 consensus_5306#2 ---------------------------GCCTGNAGCAGAATC---GGCACGAGGANNACA 30 consensus_5306#1 GTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCACTGCT 96 ** * * * * * * * ** consensus_5306#0 GCTTCCAGGTGCCGCCGGCCGAGCTGGAGTGA---GCTGCTGCGATCGCACGAAGCTGGT 174 consensus_5306#2 CGGCCCTGGGGCCG--AACCACCTCCGGCGAA---GCTGCT-CGTCCG---GGGGCCGCA 81 consensus_5306#1 CGTAGAACGGGCAGGGAAAGGCTCCCGCATCACACGATATTACCCTTGCGCTATGTTGAA 156 * ** * * * * * * * * * * consensus_5306#0 GTGCCTGATGCCTGCGGTCGTCTGGCATGCCGCACCCTGGTGGCTGGG-CGAGGTGCCGC 233 consensus_5306#2 GGTCATGAAG-----GGCTACCACAACAACCGCAAGGCGACGGACGAGATGAGTCATCGA 136 consensus_5306#1 GGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTGTTTTTGGG 216 * * * ** * * * * consensus_5306#0 GAGCCTTCNGTCGTACCTGAAGTGCGGGCTGCGCTGCTGTCTCCGAGGACGCACTGAATG 293 consensus_5306#2 GGGCGGGTGGTTGCGCACG------GGCGTACATCGCGCACTACGACGAGCAGCTGCAGG 190 consensus_5306#1 CAGGGCAATGTGAAGCGAGGGATAGGAGAGCGAGAGGAGGTTAGTGTAGGCACGTGTGCT 276 * ** * * * * * ** consensus_5306#0 GCGTTCATCGCGGAGAAGGTGGCCGTGTACAAGCGGCTCGAGGGTGGCGTCACCTTTCTG 353 consensus_5306#2 TTCTACATCACCGACCGGCTGA------ANGAGCTGATCAAGGCTGAAGG-GCCTTCCAG 243 consensus_5306#1 GTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCTGACGCACCTGAACATTGTCTCCAAC 336 * * * ** *** * * ** consensus_5306#0 GACAGTATTCCGAAGAACGCGTCGGGCAAGATCCTGCGGCGGCAGCTTAAGCTCGAGCAC 413 consensus_5306#2 GG----GTGCCGACGGACNCGAG------------------------------------- 262 consensus_5306#1 AGTGAGATGCTGGCGGTAAAGGCAGGCAACGAGCACGGTGGTGCTGCCCACCACCGACAC 396 * * * * * consensus_5306#0 TGCTCGTAGAACGGGCAGGGAAAGGCTCCCGATCACACGATATTACCCTTGCGCTAGGTT 473 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 CTTCCAGGACGTGCTGCCGTGCGTGCTGCCCTTCTTCCACATCTACGGCCTCACGGTGAC 456 consensus_5306#0 GAAGGGTTCCACTACTTGTAAAATCTCATCTTCCTCTAGGTTTTGTTTGTTTTTAGTTTT 533 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 GATGATCTCAA--AGCTGCGGCAGGGCTGCAAGCTGGTCACGCTGCCCAACTTCAAACCC 514 consensus_5306#0 TGGGCAGGGCAATGTGAGGCGAGGTATAGGAAAGGAGCGAGAGAGCGAGAGCGAACAGGA 593 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 GACACGTTCCTGAACGCGCTCGCCGAACACAAGGGCACGGTGCTGCATCTCGTCCCACCC 574 consensus_5306#0 NNCATTAGTGTAGGCACGTGTGCTGTTTGTTTTTTAATTAAGCTGACCATTCTCGAGCAC 653 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ATAATTATTTTCCTCGGCCATCACGACGGCGTCAAGCCACGGCACACCGACTCCATCCGG 634 consensus_5306#0 AGACCGTATTAGCGCGACCCCCCTTTGGGAAAATGGTCGCCAACGACCGTAGTGTGTGTG 713 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 AACGTGTTCTCGGGCGCGGCGCCGATGGGCAACGCCCGACGCCGAACGCTTTACCGCA-- 692 consensus_5306#0 AAGGGCTCGGTTTTAGCGCGGCTCATTCCCCATTTTGTGGGGCGGCTTAGTGGTGGTTTT 773 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 CTGTGGTACTGTATGTTATGTTTTTGTTTTTAATAGGAGGACGTGTTACTTTAGCTTTAG 833 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 CCCGCCCTTTCCGCCTTTCTCCTCGAGCCCAGTGAGCACAAAGCATTAAGTACATGTTAA 893 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 AACGTAAGCGTAAAAATAGACCATTTTGTATCCTTAAAAAGTGTAACCTGTCTATATAAA 953 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 TGCTCAGTGCTGCAAAATGTCACTGTCAATGTCGTAAAAAAAACTGACTAAAACAAAATC 1013 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 CATATCAGCGTCACGTACTCAATTGTCAAAAATCAGAGGTGATACTCAAAACGGTTGGTG 1073 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 TGACCAGTACATGCTTCAAGACATTGTGTGCGAACATCGCTTGGTCATTCACTATGTCAT 1133 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 GACTTTTTTTTACTGATGATCAGTGATCAGTTTTGCNAAATGTCACTGACATAGCCATGA 1193 consensus_5306#2 ------------------------------------------------------------ consensus_5306#1 ------------------------------------------------------------ consensus_5306#0 C 1194 consensus_5306#2 - consensus_5306#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||