These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTG----AAG--AAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGG-------AAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT] [+] EMBL BX468619 [AGATCGGCCGAGGCTGNNGAACGTAACGGACGCGAACGCNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTG AAG AAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGG AAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAATTGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACTCGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCATCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGACAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT] [+] EMBL BM589175 [ ccgGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATACAAAGTGTGACCAGTATTTCGGTTGGTGGTGGACAAAGTGTGTGGACAAAGCATAGTGTCAGTGGAGGAAAGGAAAAATCGCTTTAGCAAATCTTCACCCTCTTTCTGGAAAAAAAAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGCGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAG CCGGAAGGGATTGCGGTGCGCGGTAACGC TACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGGGCGACCAGGGtt ] consensusID : consensus_5308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATTTGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCGGTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT] [+] EMBL BX627793 [GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATTTGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACGCTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATTTCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTTAGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACGGGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCGTTCAGGCCGATCAGCATCGTGCCGGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAACCAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGCCGGAAGGAATTGCGGTGCGCGGTAACGCTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT] consensusID : consensus_5308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACGACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC] [+] EMBL AL930239 [GCCGAGCGTCGACGGTGTCGATTCGGTGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCACAACACAGCGCACAGCGGGATGATGTAATTCGTTCGAAATAAACATCTCTTGGCGTACGGTCGCGCGACGACATATTGGGGTAAGCATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5308#0 ------------------------------------------------------------ consensus_5308#1 GAAGGCGATTTGGATTTGATTATTTATCCCACACACAGCCACAACACAGCGCACAGCGGG 60 consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 ------------------------------------------------------------ consensus_5308#1 ATGATGTAATTCGTTCGAAATAAACATCTCTTGCGCGTACCGTTCGCGCGACCGACCATT 120 consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 --------------------AGATCGGCCGAGGC--TGNNGAACGTAACGGACGCGAACG 38 consensus_5308#1 TGGCGTAAGCATTGTGCACTTTATACGCAAACGCACCACCGAACGTAACGGACGCGAACG 180 consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 CNCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT 98 consensus_5308#1 CTCGCGGACTGGAAGATATTACGTTTGTTTTCTAAAATAATTCAAAGTGTGACCAGTATT 240 consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT 158 consensus_5308#1 TCGGTTGGTGGTGTACAAAGTGTGTGGACAAAGCATAGTGTCAGTTGAAGAAACTCGCTT 300 consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG 218 consensus_5308#1 AGGCAAATTTTCACCCTCTTTCTGGAAAAGATGGGACTGAAGAGTAAGCTGTTCAAGACG 360 consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG 278 consensus_5308#1 GGCGTGGTGCTGTTGCTGATAGCCGTTCTGCCTGGCCTGCCGCCGAAAACGGTGTTCCCG 420 consensus_5308#2 ----------------------------------GCCGAGCGTCGACGGTGTCGATTCGG 26 *** ** *** * * * * * consensus_5308#0 TTCAGGCCGATCAGCATCGTGCC---GGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAAC 335 consensus_5308#1 TTCAGGCCGATCAGCATCGTGCC---GGCCCGACCGCTGGCCGGCGTGCTGGCCCCGAAC 477 consensus_5308#2 TGTCAGTCAGTCCTTGGTTAACCCAAGGTTTCAAATCCGGCCGGAAAGGCGATTTGGATT 86 * * * ** ** ** * * ****** * * ** consensus_5308#0 CAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAGACCGGAAGGAAT 395 consensus_5308#1 CAGCTGCTTAACGGAGCGGAACGGCTGCACGAGGGCGGCCTCCAGCAG-CCGGAAGGAAT 536 consensus_5308#2 TGATTATTTATC----CCACACA-CAGCAC-AACACAGCGCACAGCGGGATG-ATGTAAT 139 * *** * * ** * **** * * ** **** * * * * *** consensus_5308#0 TGCGGTGCGCGGTAACGCGTACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCTGG 455 consensus_5308#1 TGCGGTGCGCGGTAACGC-TACCTACGTTACGGTTTACGGTGGCAAGATACTGGAGCT-- 593 consensus_5308#2 T--CGTTCGAAATAAACATCTCTTGGCGTACGGTCGC--GCGACGACATATTGGGG-TAA 194 * ** ** *** * * ****** * * * * *** *** * * consensus_5308#0 GCGACCAGGGCTCGGTGCGCACGGTGGCCAAGCTCGGGCCGGACTGTGTCGGCACCTACT 515 consensus_5308#1 ------------------------------------------------------------ consensus_5308#2 GC-ATTGTGCCTTTATACGCAAAGGGGCACAACGAAGTAAAGGGGACGCGAACGCTC--- 250 consensus_5308#0 CGGAACGGATCTGCGGACGGCCGCTGGGGCTCGATTTCGATACGAAAGGGAACAATCTCA 575 consensus_5308#1 ------------------------------------------------------------ consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 TCGTGGACCGAGCCGTAACCTCGGGCATCTGGACAAGGTGCACATTAGAGAACGGGGCGA 635 consensus_5308#1 ------------------------------------------------------------ consensus_5308#2 ------------------------------------------------------------ consensus_5308#0 CAAGAAGCTGCGTCGTGCCCAGAAGGACAAAGGCCATCATCAGT 679 consensus_5308#1 -------------------------------------------- consensus_5308#2 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||