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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence
[GCAGAATCCCCCCGAGNGTTAGTGCTCGAGTGTTTGGCGGTTTGTTTGCTGATAACATTAGTGTGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCGGGCGATGGTGGTGGTGGCGGTGGTGCTACGTGACACGCCGCCGGGCGTCTGACCTGATTGCAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTACTGTCACTGAGCTGGTCGACTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCTGCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTCTGCACTCGACTGTGCAGCAGCAGGAGCAGATCCTGTAACTACTACAAACCGTTCGCCCAAAGCTTCAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAATCTGCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATACCTTCTACAGGCCCAGCGTGCTGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACCGGCTCGTTTCGGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGCGACTGATCATGCTTTCGGTGCTG-TCTTCCAAGGGACAGTGGACGATTCCGTTCAATCGATCGTTCA-CA-CAACGTTCCGTTTNACGACGCAGAACGAGCAACCGATCGGNATGGTGCGAGCATGATTGTTTCAGAGAGGCATTTTNCCCGTTTGCCGGGTACCAGGAGCTGGACGCACAGATCCTTGGGAGGCTACCCGTACGGTGCGAAATCGGCCGGACTGACATGCTGTGAATCATTGCCGAGCCAACACGGCGTACCCGNTGGTGGCAGGGTGAATCCCGCCAAGACTGGGCGAATAACGGATACGACCGTGTTGTACGCACGAAACCTCCGACCGCACTTGNGCTGCACTATTGACGACGACNAAGGTGGACGA]
[+] EMBL AL930336 [GCAGAATCCCCCCGAGNGTTAGTGCTCGAGTGTTTGGCGGTTTGTTTGCTGATAACATTAGTGTGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCGGGCGATGGTGGTGGTGGCGGTGGTGCTACGTGACACGCCGCCGGGCGTCTGACCTGATTGCAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTACTGTCACTGAGCTGGTCGACTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCTGCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTCTGCACTCGACTGTGCAGCAGCAGGAGCAGATCCTGTAACTACTACAAACCGTTCGCCCAAAGCTTCAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAATCTGCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATACCTTCTACAGGCCCAGCGTGCTGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACCGGCTCGTTTCGGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGCGACTGATCATGCTTTCGGTGCTG TCTTCCAAGGGACAGTGGACGATTCCGTTCAATCGATCGTTCA CA CAACGTTCCGTTTNACGACGCAGAACGAGCAACCGATCGGNATGGTGCGAGCATGATTGTTTCAGAGAGGCATTTTNCCCGTTTGCCGGGTACCAGGAGCTGGACGCACAGATCCTTGGGAGGCTACCCGTACGGTGCGAAATCGGCCGGACTGACATGCTGTGAATCATTGCCGAGCCAACACGGCGTACCCGNTGGTGGCAGGGTGAATCCCGCCAAGACTGGGCGAATAACGGATACGACCGTGTTGTACGCACGAAACCTCCGACCGCACTTGNGCTGCACTATTGACGACGACNAAGGTGGACGA]
[+] EMBL BX616807 [ TTTGTTTGCTGATAACATTAGTGCGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCGGGCGATGGTGGTGGTGGCGGTGGTGCTACG GACACGCCGCCGGGCGTC GACC GATTGCAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTAC GTCACTGAGCTGGTCGACTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCTGCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTC GCGCTCGAC GTGCAGCAGCAGGAGCAGATCC GTAACTACTACAAACCGTTCGCCCAAAGCTTCAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAATC GCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATAACTTCTACAGCCCCAGTGTGCTGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACAGGCTCGTTTCCGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGCGACTGATCATGCTTTCGGTGCTGTTCTTCCAA GGACAGTGGACGATTCCGTTCAATCGATCGTTCACCACCAACGTTCCGTTTTACGACG AGAACGAGCAACCGATCGGTATGGTG GAG ATGA TGTTTCAGAGAGGCATTTT CCCGTTTGCCGGGTACAAGGAGCTCGACGCACAGATCCT GGA GCTA CCGTACGGTGCGAA ]
consensusID : consensus_5309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence
[CCGCTGTTATTCTTCTGCAGACACATCATGGGACGGTTTGTGCTCGAGTGTTTGGCGGTTTGTTTGCTGATAACATTAGTGCGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCGGGCGATGGTGGTGGTGGCGGTGGTGCTACGGACACGCCGCCGGGCGTCGACCGATTGCAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTACGTCACTGAGCTGGTCGACTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCTGCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTCGCGCTCGACGTGCAGCAGCAGGAGCAGATCCGTAACTACTACAAACCGTTCGCCCAAAGCTTCAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAATCGCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATAACTTCTACAGCCCCAGTGTGCTGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACAGGCTCGTTTCCGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGCGACTGATCATGCTTTCGGTGCTGT]
[+] EMBL BM582503 [CCGCTGTTATTCTTCTGCAGACACATCATGGGACGGTTTGTGCTCGAGTGTTTGGCGGTTTGTTTGCTGATAACATTAGTGCGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCGGGCGATGGTGGTGGTGGCGGTGGTGCTACGGACACGCCGCCGGGCGTCGACCGATTGCAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTACGTCACTGAGCTGGTCGACTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCTGCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTCGCGCTCGACGTGCAGCAGCAGGAGCAGATCCGTAACTACTACAAACCGTTCGCCCAAAGCTTCAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAATCGCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATAACTTCTACAGCCCCAGTGTGCTGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACAGGCTCGTTTCCGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGCGACTGATCATGCTTTCGGTGCTGT]
[+] EMBL BX604906 [ TCGAGTGTTTGGCGGTTTGTTTGCTTATAACATTAGTGCGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCGGGCGATGGTGGTGGTGGCGGTGGTGCTACGGACACGCCGCCGGGCGTCGACCGATTGCAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTACGTCACTGAGCTGGTCGACTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCTGCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTCGCGCTCGACGTGCAGCAGCAGGAGCAGATCCGTAACTACTACAAACCGTTCGCCCAAAGCTTCAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAATCGCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATAACTTCTACAGCCCCAGTGTGCTGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACAGGCTCGTTTCCGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGCGACTGATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5309#0 ----------------GCAGAATCCCCCCGAGN--GTTAGTGCTCGAGTGTTTGGCGGTT 42
consensus_5309#1 CCGCTGTTATTCTTCTGCAGACACATCATGGGACGGTTTGTGCTCGAGTGTTTGGCGGTT 60
***** * * * * *** *********************
consensus_5309#0 TGTTTGCTGATAACATTAGTGTGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCG 102
consensus_5309#1 TGTTTGCTGATAACATTAGTGCGCTGCCAACAAAATGGGACCTTTACGTTTGCCACGTCG 120
********************* **************************************
consensus_5309#0 GGCGATGGTGGTGGTGGCGGTGGTGCTACGTGACACGCCGCCGGGCGTCTGACCTGATTG 162
consensus_5309#1 GGCGATGGTGGTGGTGGCGGTGGTGCTACG-GACACGCCGCCGGGCGTC-GACC-GATTG 177
****************************** ****************** **** *****
consensus_5309#0 CAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTACTGTCACTGAGCTGGTCGA 222
consensus_5309#1 CAACGAAGCTCGCAAAAGTTTGCCCTACAGTTTTACCAGTAC-GTCACTGAGCTGGTCGA 236
****************************************** *****************
consensus_5309#0 CTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCT 282
consensus_5309#1 CTACAATCCAAACGTAACGACGACGAACATAATCGTGTCACCGTTTTCGGCCTGGAATCT 296
************************************************************
consensus_5309#0 GCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTCTGCAC 342
consensus_5309#1 GCTGACCTTGATAACGGAAGGCGCCTCCGGTCGGACACTGGACGAGCTGCTGGTC-GCGC 355
******************************************************* ** *
consensus_5309#0 TCGACTGTGCAGCAGCAGGAGCAGATCCTGTAACTACTACAAACCGTTCGCCCAAAGCTT 402
consensus_5309#1 TCGAC-GTGCAGCAGCAGGAGCAGATCC-GTAACTACTACAAACCGTTCGCCCAAAGCTT 413
***** ********************** *******************************
consensus_5309#0 CAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAA 462
consensus_5309#1 CAGCCTACTCGATCGAGATGTACAGCTGGCAGCGGCCCAGTACGTCATCACGGACGAAAA 473
************************************************************
consensus_5309#0 TCTGCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATACCTTCTACAGGCCCAGCGTGC 522
consensus_5309#1 TC-GCCCCGTGTCGAAGGACTTTGAATCCGCTTTGGATAACTTCTACAGCCCCAGTGTGC 532
** ************************************ ********* ***** ****
consensus_5309#0 TGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACCGGCTCGTTT 582
consensus_5309#1 TGCAGCCGATGAACTTTGCCAACCGCAGCCTAACGTACGAACGGGTGAACAGGCTCGTTT 592
************************************************** *********
consensus_5309#0 CGGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGC 642
consensus_5309#1 CCGACGCCACGCAAGGACAGATCCCGAAGGCGATCGAAATGAGCGATCTTGAGGATGCGC 652
* **********************************************************
consensus_5309#0 GACTGATCATGCTTTCGGTGCTGTCTTCCAAGGGACAGTGGACGATTCCGTTCAATCGAT 702
consensus_5309#1 GACTGATCATGCTTTCGGTGCTGT------------------------------------ 676
************************
consensus_5309#0 CGTTCACACAACGTTCCGTTTNACGACGCAGAACGAGCAACCGATCGGNATGGTGCGAGC 762
consensus_5309#1 ------------------------------------------------------------
consensus_5309#0 ATGATTGTTTCAGAGAGGCATTTTNCCCGTTTGCCGGGTACCAGGAGCTGGACGCACAGA 822
consensus_5309#1 ------------------------------------------------------------
consensus_5309#0 TCCTTGGGAGGCTACCCGTACGGTGCGAAATCGGCCGGACTGACATGCTGTGAATCATTG 882
consensus_5309#1 ------------------------------------------------------------
consensus_5309#0 CCGAGCCAACACGGCGTACCCGNTGGTGGCAGGGTGAATCCCGCCAAGACTGGGCGAATA 942
consensus_5309#1 ------------------------------------------------------------
consensus_5309#0 ACGGATACGACCGTGTTGTACGCACGAAACCTCCGACCGCACTTGNGCTGCACTATTGAC 1002
consensus_5309#1 ------------------------------------------------------------
consensus_5309#0 GACGACNAAGGTGGACGA 1020
consensus_5309#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||