These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 957 fasta sequence [CGAAGGGTATTAAAAGTGTAAATTGATTCCCATTTTTATTGTGCC-G-CCTCCCGATCTG-GGGAGAGAACGAAACAAGTTCTCTTAATCACTACAAAGTATACTCTGACAGACATAAAA-ACATCCTTTTAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGACAGAGCAA-CCCAACT--CCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGAC-TCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATTGGAATGACGGAACAGGGGACGCAGAAGACACTCAGCTCGAGTGGTAGTACACTGCCCGCCAGCAGTCCCGTCATCTGGGCGATCCAGCTGGTGAAGATACAGATGCTCCACAGCATTACGATGCGATCGCGGTCCATTGGTTGGGAGGTTAGGTAGTAAGCACCGGCAAGGAATACGGATGGACCCAGTATCAGAAATGGAAAGTCCGCCACTAGCTTGGAGAAGTAATAGGCCTTAAGTGAGTACCAGTTGTTCATTCTCTCCCGAACAAACACAGACGTCTCCAGAGGGAACGTCATGACTAAAGGCATCGAGTTGGCGAAGAATACAAAAATAAGGAAGAAGAACAGGCAAGACGCATTGCTCAGCATCTTCGATCCATCGTTACCGACGTCGTAAAACACGACCGCG] [-] EMBL BM636490 [CGAAGGGTATTAAAAGTGTAAATTGATTCCCATATTTATTGTGCCAC CCTCCCGATTTGAGGGGGAGAACGAAACAAGTTCTCTTAATCACTAAAAAGTATACTCTGACAGACATAAAA ACATCCTTTAAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGATAGAGCAACCCCAATTTCCCCCCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGACGTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCCAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATTGGAATGACGGAACAGGGGACGCAGAAGACACTCAGCTCGAGTGGTAGTACACTGCCCGCCAGCAGTCCCGTCATCTGGGCGATCCAGCTGGTGAAGATACAGATGCTCCACAGCATTACGATGCGATCGCGG ] [+] EMBL CNS08W94 [ TGAT CCATTTTTATTGTGCC G CCTCCCGATCTG GGGAGAGAACGAAACAAGTTCTCTTAATCACTACAAAGTATACTCTGACAGACATAAAACACCCCCGGTTAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGACAGAGCAA CCCAACT CCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGAC TCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGAGCAGGGTAGATTCGCACGATCG TCCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATCGGAATGACGGAACACGGGACGCAGAAGACGCTCAGCTCGAGTGGTAGCACACTGCCCGCCAGCAGTCCCGTCATCTGGGCGATCCAGCTAGTGAAGATACAGATGCTCCACAGCATTACGATGCGATCGAGCTCCATTGGTTGGGAGGTTAGGTAGTAAGCACCGGCAAGGAATACGGATGGACCCAGTATCAGAAATGGAAAGTCCGCCACTAGCTTGGAGAAGTAATAGGCCTTAAGTGAGTACCAGTTGTTCATTCTCTCCCGAACAAACACAGACGTCTCCAGAGGGAACGTCATGACTAAAGGCATCGAGTTGGCGAAGAATACAAAAATAAGGAAGAAGAACAGGCAAGACGCATTGCTCAGCATCTTCGATCCATCGTTACCGACGTCGTAAAACACGACCGCG] [+] EMBL CNS08ZID [ CATTTTTATTGTGCC GCCCTCCCGATCTG GGGAGAGAACGAAACAAGTTCTCTTAATCACTACAAAGTATACTCTGACAGACATAAAA ACATCCTTTTAAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGACAGAGCAA CCCAACT CCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGAC TCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACTTGGGCACCTTGCTAAAGTAGCAGAAATCACCCGCCCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAACGGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGAT ] consensusID : consensus_5313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [ACGCGAACTGATGGAATAATTTAAACCAGCAAATGCCTGCAAACACCACAACGTGCACAACGCGTGTTATGCAAATGTGTCCGTCATCACGTGTCGCTTCACATGGCGCGAAGGGTATTAAAAGTGGTAAATTGATTCCCATTTTTTATTGTGCCACCACTCCCGATCTGGGGGGAGAACGAAACAAGTTCTCTTAATCAGCTAAAAAGTATACTCTGACAGACATAAGAAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGATAGACAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATATCGAAGCTGTCCAGAAATTTGGNCACCTTGNTAAAGTAGCAGAATATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGCAACGTACGTGAACGGAATGAGAAAGTCAAACATTCACGAAGCGGATAAACCTGCGGG] [-] EMBL AL930482 [ACGCGAACTGATGGAATAATTTAAACCAGCAAATGCCTGCAAACACCACAACGTGCACAACGCGTGTTATGCAAATGTGTCCGTCATCACGTGTCGCTTCACATGGCGCGAAGGGTATTAAAAGTGGTAAATTGATTCCCATTTTTTATTGTGCCACCACTCCCGATCTGGGGGGAGAACGAAACAAGTTCTCTTAATCAGCTAAAAAGTATACTCTGACAGACATAAGAAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACAAGTGTCACTAGGGATAGACAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTCGCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGAGCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATATCGAAGCTGTCCAGAAATTTGGNCACCTTGNTAAAGTAGCAGAATATCACCCGAGCAGGGTAGATTCGCACGATCGAACCCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGCAACGTACGTGAACGGAATGAGAAAGTCAAACATTCACGAAGCGGATAAACCTGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5313#0 ------------------------------------------------------------ consensus_5313#1 ACGCGAACTGATGGAATAATTTAAACCAGCAAATGCCTGCAAACACCACAACGTGCACAA 60 consensus_5313#0 ------------------------------------------------CGAAGGGTATTA 12 consensus_5313#1 CGCGTGTTATGCAAATGTGTCCGTCATCACGTGTCGCTTCACATGGCGCGAAGGGTATTA 120 ************ consensus_5313#0 AAAGTG-TAAATTGATTCCCATTTTT-ATTGTGCCGCC--TCCCGATCTGGGGAGAGAAC 68 consensus_5313#1 AAAGTGGTAAATTGATTCCCATTTTTTATTGTGCCACCACTCCCGATCTGGGGGGAGAAC 180 ****** ******************* ******** ** ************* ****** consensus_5313#0 GAAACAAGTTCTCTTAATCA-CTACAAAGTATACTCTGACAGACATAAAAACATCCTTTT 127 consensus_5313#1 GAAACAAGTTCTCTTAATCAGCTAAAAAGTATACTCTGACAGACATAAGAA--------- 231 ******************** *** *********************** ** consensus_5313#0 AAACTTAACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACA 187 consensus_5313#1 -------ACATACAAACGTGTCGCTTACTCGATAAAATAAATGCCAACTTATTACGTACA 284 ***************************************************** consensus_5313#0 AGTGTCACTAGGGACAGAGCAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTC 247 consensus_5313#1 AGTGTCACTAGGGATAGA-CAACCCAACTCCACCACACACCGGCAGCGATCATCGAGTTC 343 ************** *** ***************************************** consensus_5313#0 GCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGA 307 consensus_5313#1 GCTTCAGTCTCCACGCGAGACTCGCGTACAGTCCCACGTGCAGCACAAAGATCCACCCGA 403 ************************************************************ consensus_5313#0 GCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATGTCGAAGCTGTCTAGAAACT 367 consensus_5313#1 GCAGCCCGCAAACGTCCATCACGAACGTGTTTTCCAGCATATCGAAGCTGTCCAGAAATT 463 **************************************** *********** ***** * consensus_5313#0 TGGGCACCTTGCTAAAGTAGCAGAA-ATCACCCGAGCAGGGTAGATTCGCACGATCGAAC 426 consensus_5313#1 TGGNCACCTTGNTAAAGTAGCAGAATATCACCCGAGCAGGGTAGATTCGCACGATCGAAC 523 *** ******* ************* ********************************** consensus_5313#0 CCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAGGCAACGTACGTGAAC 486 consensus_5313#1 CCGTAGATCGCTTGCATCGCTCCCTCGAAGCTGTACCGGAAGTAG-CAACGTACGTGAAC 582 ********************************************* ************** consensus_5313#0 GGAATGAGAAAGTCAAACATCTCACGGAAGCGGACAAAAAACCCGCAAAAGATTAGCATT 546 consensus_5313#1 GGAATGAGAAAGTCAAACAT-TCACG-AAGCGGATA---AACCTGCGGG----------- 626 ******************** ***** ******* * **** ** consensus_5313#0 GGAATGACGGAACAGGGGACGCAGAAGACACTCAGCTCGAGTGGTAGTACACTGCCCGCC 606 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 AGCAGTCCCGTCATCTGGGCGATCCAGCTGGTGAAGATACAGATGCTCCACAGCATTACG 666 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 ATGCGATCGCGGTCCATTGGTTGGGAGGTTAGGTAGTAAGCACCGGCAAGGAATACGGAT 726 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 GGACCCAGTATCAGAAATGGAAAGTCCGCCACTAGCTTGGAGAAGTAATAGGCCTTAAGT 786 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 GAGTACCAGTTGTTCATTCTCTCCCGAACAAACACAGACGTCTCCAGAGGGAACGTCATG 846 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 ACTAAAGGCATCGAGTTGGCGAAGAATACAAAAATAAGGAAGAAGAACAGGCAAGACGCA 906 consensus_5313#1 ------------------------------------------------------------ consensus_5313#0 TTGCTCAGCATCTTCGATCCATCGTTACCGACGTCGTAAAACACGACCGCG 957 consensus_5313#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||